Wall clock time and date at job start Fri Apr 10 2020 17:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47135 * 2 1 4 4 C 1.53000 * 109.46931 * 164.91665 * 3 2 1 5 5 C 1.53001 * 109.46908 * 202.33988 * 4 3 2 6 6 C 1.52995 * 109.47195 * 284.91597 * 3 2 1 7 7 N 1.46504 * 109.47082 * 182.71001 * 6 3 2 8 8 C 1.46500 * 120.00029 * 279.00147 * 7 6 3 9 9 C 1.50703 * 109.46965 * 264.84874 * 8 7 6 10 10 H 1.08005 * 120.00018 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99844 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00367 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99986 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47465 * 59.99406 * 13 11 9 15 15 H 1.48502 * 109.47168 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47245 * 299.99557 * 13 11 9 17 17 C 1.34773 * 119.99782 * 99.00012 * 7 6 3 18 18 O 1.21567 * 120.00445 * 182.35599 * 17 7 6 19 19 C 1.47714 * 119.99846 * 2.35658 * 17 7 6 20 20 C 1.41503 * 126.51709 * 187.64731 * 19 17 7 21 21 C 1.35363 * 105.50672 * 180.02562 * 20 19 17 22 22 N 1.35036 * 107.22485 * 359.97438 * 21 20 19 23 23 H 0.97005 * 124.88143 * 179.97438 * 22 21 20 24 24 N 1.28464 * 110.23402 * 0.02562 * 22 21 20 25 25 H 1.08992 * 109.47767 * 67.16516 * 1 2 3 26 26 H 1.09011 * 109.46967 * 187.16988 * 1 2 3 27 27 H 1.09000 * 109.46991 * 307.15849 * 1 2 3 28 28 H 1.09004 * 109.46794 * 240.00408 * 2 1 3 29 29 H 1.09002 * 109.47289 * 120.00707 * 2 1 3 30 30 H 1.09002 * 109.46690 * 44.92048 * 3 2 1 31 31 H 1.08999 * 109.47484 * 322.33787 * 4 3 2 32 32 H 1.09004 * 109.47277 * 82.34018 * 4 3 2 33 33 H 1.09005 * 109.47222 * 161.17658 * 5 4 3 34 34 H 1.09002 * 109.47345 * 281.17217 * 5 4 3 35 35 H 1.08993 * 109.47212 * 41.17227 * 5 4 3 36 36 H 1.09008 * 109.47060 * 62.71469 * 6 3 2 37 37 H 1.08999 * 109.47469 * 302.71530 * 6 3 2 38 38 H 1.09000 * 109.47427 * 24.84582 * 8 7 6 39 39 H 1.09002 * 109.46828 * 144.85005 * 8 7 6 40 40 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 41 41 H 1.08008 * 127.24889 * 0.03274 * 20 19 17 42 42 H 1.08002 * 126.38809 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5231 1.4590 0.3754 5 6 3.8974 2.8412 0.9142 6 6 1.8599 2.0471 -1.3938 7 7 2.4072 3.4060 -1.4111 8 6 1.6148 4.5214 -0.8875 9 6 0.8816 5.1922 -2.0205 10 1 0.9949 4.8246 -3.0297 11 6 0.0671 6.2757 -1.7688 12 7 -0.0704 6.7237 -0.5400 13 14 -0.8423 7.1067 -3.1730 14 1 -1.7433 6.1252 -3.8290 15 1 -1.6453 8.2375 -2.6423 16 1 0.1383 7.6178 -4.1642 17 6 3.6395 3.6298 -1.9087 18 8 4.1108 4.7501 -1.8840 19 6 4.4176 2.5138 -2.4841 20 6 5.7684 2.5572 -2.9032 21 6 6.0466 1.3127 -3.3571 22 7 4.9247 0.5748 -3.2144 23 1 4.8399 -0.3594 -3.4615 24 7 3.9856 1.2883 -2.7051 25 1 -0.3634 0.3988 -0.9470 26 1 -0.3633 -1.0197 0.1283 27 1 -0.3633 0.6207 0.8190 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.4750 2.0275 0.7257 31 1 3.7125 0.7070 1.1413 32 1 4.1238 1.2381 -0.5070 33 1 4.8257 2.7710 1.4812 34 1 4.0318 3.5317 0.0815 35 1 3.1016 3.2057 1.5636 36 1 0.7988 2.0796 -1.6415 37 1 2.3854 1.4344 -2.1264 38 1 0.8947 4.1459 -0.1606 39 1 2.2758 5.2418 -0.4055 40 1 -0.6438 7.4858 -0.3629 41 1 6.4369 3.4048 -2.8681 42 1 6.9902 0.9729 -3.7580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104545842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:22 Heat of formation + Delta-G solvation = 45.301579 kcal Electronic energy + Delta-G solvation = -23353.618628 eV Core-core repulsion = 20142.945983 eV Total energy + Delta-G solvation = -3210.672645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.51256 -39.09236 -36.72966 -33.96670 -32.52721 -31.60559 -31.49526 -30.61701 -27.98838 -26.95391 -24.36730 -23.78588 -22.02793 -21.61433 -21.32247 -19.85454 -18.94509 -17.74995 -16.49053 -16.37476 -15.67312 -15.17823 -14.75453 -14.13657 -14.07160 -13.75720 -13.52945 -13.15671 -13.09605 -12.90850 -12.42618 -12.36057 -12.14621 -11.88713 -11.47336 -11.22029 -11.16680 -10.91885 -10.65645 -10.63984 -10.44002 -10.22959 -10.18341 -9.93929 -9.55871 -9.46282 -9.09986 -9.05158 -9.01404 -8.34500 -7.44430 -5.95544 -3.99395 1.90949 2.38892 2.98158 3.38068 3.41662 3.45699 4.04382 4.12775 4.52217 4.77358 4.92894 5.09477 5.21227 5.26668 5.38417 5.51484 5.59668 5.76955 5.79123 5.82038 5.88781 5.98647 6.02191 6.15647 6.22465 6.30971 6.37175 6.40808 6.44648 6.54240 6.64866 6.69653 6.84405 6.91818 7.09546 7.26755 7.54909 7.69772 8.01582 8.06625 8.33165 8.56560 8.98608 9.18848 9.65056 11.12331 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.006772 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.085716 B = 4133.606208 C = 5021.119274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.160 4.160 6 C 0.086 3.914 7 N -0.577 5.577 8 C 0.251 3.749 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.590 3.410 18 O -0.535 6.535 19 C 0.011 3.989 20 C -0.186 4.186 21 C -0.020 4.020 22 N -0.397 5.397 23 H 0.440 0.560 24 N -0.260 5.260 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.263 0.737 41 H 0.159 0.841 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 -17.021 -1.874 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.217 4.217 6 C -0.039 4.039 7 N -0.307 5.307 8 C 0.132 3.868 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.375 3.625 18 O -0.411 6.411 19 C -0.150 4.150 20 C -0.214 4.214 21 C -0.165 4.165 22 N -0.109 5.109 23 H 0.284 0.716 24 N -0.095 5.095 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.177 0.823 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.098 -16.871 -1.630 18.785 hybrid contribution 0.074 0.461 -0.915 1.027 sum 8.173 -16.411 -2.545 18.509 Atomic orbital electron populations 1.21824 0.96015 1.00781 1.02451 1.21505 0.95713 0.96403 1.01255 1.21674 0.95985 0.95559 0.98874 1.21630 0.96272 0.97124 1.00344 1.22086 1.00102 0.97634 1.01865 1.22382 1.00320 0.83843 0.97322 1.48069 1.14697 1.09287 1.58661 1.19248 0.89958 0.83260 0.94375 1.21425 1.26505 1.14002 0.94255 0.92554 1.24901 0.96764 0.96643 0.95694 1.69922 1.38925 1.25741 1.18917 0.86592 0.79618 0.78965 0.82439 1.20343 1.21228 1.20200 1.16831 0.81365 0.85739 0.78586 1.90781 1.69875 1.22498 1.57952 1.22551 0.95048 0.92067 1.05357 1.21815 0.96081 0.98024 1.05479 1.22834 0.93609 0.92810 1.07207 1.43620 1.07881 1.13069 1.46298 0.71637 1.73466 1.15613 1.04672 1.15751 0.92342 0.93475 0.92635 0.92175 0.92619 0.91077 0.93406 0.91751 0.94238 0.91055 0.92733 0.91275 0.86194 0.94820 0.94114 0.92774 0.82291 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.69 37.16 0.36 -1.54 16 2 C -0.11 -1.40 5.41 -26.73 -0.14 -1.55 16 3 C -0.10 -1.60 2.13 -90.62 -0.19 -1.80 16 4 C -0.12 -1.80 5.06 -26.73 -0.14 -1.94 16 5 C -0.16 -2.84 9.21 37.16 0.34 -2.50 16 6 C 0.09 1.57 4.67 -4.04 -0.02 1.55 16 7 N -0.58 -12.87 1.32 -176.22 -0.23 -13.10 16 8 C 0.25 6.70 4.94 -5.19 -0.03 6.68 16 9 C -0.52 -15.28 9.34 -34.44 -0.32 -15.60 16 10 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 11 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 12 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 13 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.59 13.22 4.60 -12.39 -0.06 13.16 16 18 O -0.54 -14.03 16.26 5.31 0.09 -13.94 16 19 C 0.01 0.20 5.44 -82.76 -0.45 -0.26 16 20 C -0.19 -2.68 10.82 -39.36 -0.43 -3.11 16 21 C -0.02 -0.20 12.02 -17.17 -0.21 -0.40 16 22 N -0.40 -3.98 6.83 30.47 0.21 -3.77 16 23 H 0.44 2.54 8.96 -190.44 -1.71 0.83 16 24 N -0.26 -3.77 7.14 33.42 0.24 -3.53 16 25 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 28 H 0.06 0.71 8.03 -51.93 -0.42 0.30 16 29 H 0.06 0.65 7.77 -51.93 -0.40 0.25 16 30 H 0.07 1.25 7.35 -51.93 -0.38 0.87 16 31 H 0.05 0.66 7.70 -51.93 -0.40 0.26 16 32 H 0.06 1.01 4.74 -51.93 -0.25 0.76 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.49 3.89 -51.93 -0.20 1.28 16 35 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 36 H 0.07 1.32 7.24 -51.92 -0.38 0.94 16 37 H 0.12 2.03 4.02 -93.99 -0.38 1.65 16 38 H 0.03 0.92 7.91 -51.93 -0.41 0.50 16 39 H 0.04 1.22 7.55 -51.93 -0.39 0.82 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -34.50 331.20 -8.11 -42.62 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.75 Total: 1.23 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.37 Total: -5.60 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.95 Total: -46.72 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.50 -8.11 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104545842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.918 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds