Wall clock time and date at job start Fri Apr 10 2020 17:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47135 * 2 1 4 4 C 1.53000 * 109.46931 * 164.91665 * 3 2 1 5 5 C 1.53001 * 109.46908 * 202.33988 * 4 3 2 6 6 C 1.52995 * 109.47195 * 284.91597 * 3 2 1 7 7 N 1.46504 * 109.47082 * 182.71001 * 6 3 2 8 8 C 1.46500 * 120.00029 * 279.00147 * 7 6 3 9 9 C 1.50703 * 109.46965 * 264.84874 * 8 7 6 10 10 H 1.08005 * 120.00018 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99844 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00367 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99986 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47465 * 59.99406 * 13 11 9 15 15 H 1.48502 * 109.47168 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47245 * 299.99557 * 13 11 9 17 17 C 1.34773 * 119.99782 * 99.00012 * 7 6 3 18 18 O 1.21567 * 120.00445 * 182.35599 * 17 7 6 19 19 C 1.47714 * 119.99846 * 2.35658 * 17 7 6 20 20 C 1.41503 * 126.51709 * 187.64731 * 19 17 7 21 21 C 1.35363 * 105.50672 * 180.02562 * 20 19 17 22 22 N 1.35036 * 107.22485 * 359.97438 * 21 20 19 23 23 H 0.97005 * 124.88143 * 179.97438 * 22 21 20 24 24 N 1.28464 * 110.23402 * 0.02562 * 22 21 20 25 25 H 1.08992 * 109.47767 * 67.16516 * 1 2 3 26 26 H 1.09011 * 109.46967 * 187.16988 * 1 2 3 27 27 H 1.09000 * 109.46991 * 307.15849 * 1 2 3 28 28 H 1.09004 * 109.46794 * 240.00408 * 2 1 3 29 29 H 1.09002 * 109.47289 * 120.00707 * 2 1 3 30 30 H 1.09002 * 109.46690 * 44.92048 * 3 2 1 31 31 H 1.08999 * 109.47484 * 322.33787 * 4 3 2 32 32 H 1.09004 * 109.47277 * 82.34018 * 4 3 2 33 33 H 1.09005 * 109.47222 * 161.17658 * 5 4 3 34 34 H 1.09002 * 109.47345 * 281.17217 * 5 4 3 35 35 H 1.08993 * 109.47212 * 41.17227 * 5 4 3 36 36 H 1.09008 * 109.47060 * 62.71469 * 6 3 2 37 37 H 1.08999 * 109.47469 * 302.71530 * 6 3 2 38 38 H 1.09000 * 109.47427 * 24.84582 * 8 7 6 39 39 H 1.09002 * 109.46828 * 144.85005 * 8 7 6 40 40 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 41 41 H 1.08008 * 127.24889 * 0.03274 * 20 19 17 42 42 H 1.08002 * 126.38809 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5231 1.4590 0.3754 5 6 3.8974 2.8412 0.9142 6 6 1.8599 2.0471 -1.3938 7 7 2.4072 3.4060 -1.4111 8 6 1.6148 4.5214 -0.8875 9 6 0.8816 5.1922 -2.0205 10 1 0.9949 4.8246 -3.0297 11 6 0.0671 6.2757 -1.7688 12 7 -0.0704 6.7237 -0.5400 13 14 -0.8423 7.1067 -3.1730 14 1 -1.7433 6.1252 -3.8290 15 1 -1.6453 8.2375 -2.6423 16 1 0.1383 7.6178 -4.1642 17 6 3.6395 3.6298 -1.9087 18 8 4.1108 4.7501 -1.8840 19 6 4.4176 2.5138 -2.4841 20 6 5.7684 2.5572 -2.9032 21 6 6.0466 1.3127 -3.3571 22 7 4.9247 0.5748 -3.2144 23 1 4.8399 -0.3594 -3.4615 24 7 3.9856 1.2883 -2.7051 25 1 -0.3634 0.3988 -0.9470 26 1 -0.3633 -1.0197 0.1283 27 1 -0.3633 0.6207 0.8190 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.4750 2.0275 0.7257 31 1 3.7125 0.7070 1.1413 32 1 4.1238 1.2381 -0.5070 33 1 4.8257 2.7710 1.4812 34 1 4.0318 3.5317 0.0815 35 1 3.1016 3.2057 1.5636 36 1 0.7988 2.0796 -1.6415 37 1 2.3854 1.4344 -2.1264 38 1 0.8947 4.1459 -0.1606 39 1 2.2758 5.2418 -0.4055 40 1 -0.6438 7.4858 -0.3629 41 1 6.4369 3.4048 -2.8681 42 1 6.9902 0.9729 -3.7580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104545842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:22 Heat of formation + Delta-G solvation = 22.594785 kcal Electronic energy + Delta-G solvation = -23354.603268 eV Core-core repulsion = 20142.945983 eV Total energy + Delta-G solvation = -3211.657286 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.59637 -40.73506 -38.23387 -35.80661 -34.48745 -32.93934 -32.68627 -31.70298 -29.75892 -28.62095 -25.91617 -25.51105 -23.51382 -22.83847 -22.48017 -21.15153 -20.25022 -19.01263 -18.60734 -17.85225 -17.21696 -16.97909 -16.17268 -15.89487 -15.39862 -15.09594 -14.66211 -14.52505 -14.39838 -14.24387 -14.22462 -13.89866 -13.54389 -13.41409 -13.14913 -12.96033 -12.75409 -12.57703 -12.44624 -12.23700 -11.99882 -11.78846 -11.65242 -11.40053 -11.24868 -11.04675 -10.69608 -10.63772 -10.26756 -10.04950 -9.26914 -8.21311 -6.36672 0.66896 1.33715 1.35329 1.39184 1.46740 2.03528 2.34894 2.52689 2.59358 3.06808 3.50510 3.85257 3.96294 4.03567 4.20169 4.28543 4.42854 4.53945 4.59214 4.62223 4.66992 4.81646 4.85127 4.88686 4.99276 5.07078 5.10175 5.13147 5.19949 5.21704 5.28670 5.30278 5.42539 5.45009 5.50933 5.56704 5.66300 5.91343 6.08225 6.32338 6.69466 6.80046 7.04650 7.27768 7.48676 8.85130 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.006772 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.085716 B = 4133.606208 C = 5021.119274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.097 4.097 4 C -0.107 4.107 5 C -0.158 4.158 6 C 0.084 3.916 7 N -0.582 5.582 8 C 0.273 3.727 9 C -0.545 4.545 10 H 0.048 0.952 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.277 1.277 17 C 0.585 3.415 18 O -0.592 6.592 19 C -0.026 4.026 20 C -0.217 4.217 21 C 0.027 3.973 22 N -0.366 5.366 23 H 0.465 0.535 24 N -0.266 5.266 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.143 0.857 38 H 0.019 0.981 39 H -0.004 1.004 40 H 0.268 0.732 41 H 0.153 0.847 42 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -20.584 -3.601 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.116 4.116 4 C -0.145 4.145 5 C -0.216 4.216 6 C -0.039 4.039 7 N -0.310 5.310 8 C 0.152 3.848 9 C -0.584 4.584 10 H 0.066 0.934 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.790 3.210 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.203 1.203 17 C 0.374 3.626 18 O -0.473 6.473 19 C -0.185 4.185 20 C -0.245 4.245 21 C -0.119 4.119 22 N -0.082 5.082 23 H 0.314 0.686 24 N -0.103 5.103 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.160 0.840 38 H 0.037 0.963 39 H 0.014 0.986 40 H 0.077 0.923 41 H 0.171 0.829 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 9.094 -20.507 -3.357 22.683 hybrid contribution -0.144 1.489 -0.382 1.544 sum 8.950 -19.019 -3.739 21.349 Atomic orbital electron populations 1.21826 0.96060 1.01978 1.01263 1.21457 0.95620 0.93793 1.03047 1.21614 0.96281 0.97410 0.96313 1.21585 0.95741 0.95931 1.01220 1.22044 1.00357 0.98647 1.00505 1.22657 0.99409 0.82061 0.99761 1.47998 1.14849 1.09654 1.58549 1.18606 0.88838 0.83915 0.93432 1.21678 1.27393 1.15028 0.94286 0.93421 1.25834 0.97450 0.97071 0.98564 1.70045 1.39422 1.26162 1.20998 0.85495 0.78362 0.78279 0.78846 1.18649 1.19868 1.20299 1.17458 0.81094 0.86574 0.77495 1.90716 1.71105 1.25298 1.60147 1.21814 0.96133 0.91965 1.08568 1.21989 0.94833 1.00321 1.07372 1.23469 0.94681 0.90357 1.03391 1.43680 1.07028 1.13868 1.43642 0.68644 1.73150 1.17040 1.03724 1.16382 0.93531 0.90889 0.94064 0.90370 0.90626 0.93934 0.90618 0.91151 0.92493 0.94450 0.94601 0.92888 0.84018 0.96344 0.98634 0.92344 0.82937 0.74601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.69 71.98 0.70 -2.93 16 2 C -0.10 -2.33 5.41 30.59 0.17 -2.17 16 3 C -0.10 -3.07 2.13 -10.80 -0.02 -3.09 16 4 C -0.11 -3.25 5.06 30.59 0.15 -3.09 16 5 C -0.16 -5.90 9.21 71.98 0.66 -5.24 16 6 C 0.08 3.16 4.67 86.38 0.40 3.57 16 7 N -0.58 -27.71 1.32 -829.71 -1.10 -28.81 16 8 C 0.27 15.88 4.94 85.63 0.42 16.31 16 9 C -0.55 -33.69 9.34 25.60 0.24 -33.45 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 11 C 0.01 0.59 5.46 84.65 0.46 1.06 16 12 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 13 Si 0.97 47.10 29.54 68.60 2.03 49.12 16 14 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 17 C 0.59 27.86 4.60 86.75 0.40 28.26 16 18 O -0.59 -33.70 16.26 -3.93 -0.06 -33.77 16 19 C -0.03 -0.92 5.44 42.46 0.23 -0.69 16 20 C -0.22 -5.93 10.82 22.41 0.24 -5.69 16 21 C 0.03 0.40 12.02 83.54 1.00 1.40 16 22 N -0.37 -5.60 6.83 -57.51 -0.39 -5.99 16 23 H 0.46 2.55 8.96 -219.99 -1.97 0.58 16 24 N -0.27 -7.08 7.14 -48.17 -0.34 -7.42 16 25 H 0.05 1.19 7.32 -2.39 -0.02 1.17 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.07 8.02 -2.39 -0.02 1.05 16 28 H 0.08 1.56 8.03 -2.38 -0.02 1.54 16 29 H 0.08 1.49 7.77 -2.39 -0.02 1.47 16 30 H 0.04 1.59 7.35 -2.39 -0.02 1.57 16 31 H 0.08 1.88 7.70 -2.39 -0.02 1.86 16 32 H 0.07 2.07 4.74 -2.38 -0.01 2.06 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.04 1.67 3.89 -2.39 -0.01 1.66 16 35 H 0.03 1.41 7.68 -2.39 -0.02 1.40 16 36 H 0.05 2.12 7.24 -2.38 -0.02 2.10 16 37 H 0.14 4.71 4.02 -56.79 -0.23 4.48 16 38 H 0.02 1.10 7.91 -2.39 -0.02 1.08 16 39 H 0.00 -0.29 7.55 -2.39 -0.02 -0.31 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.24 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -83.37 331.20 4.32 -79.05 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -1.16 Total: 11.63 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.06 Total: -5.77 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -1.55 Total: -100.27 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.06 Total: -33.77 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -83.37 4.32 -79.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104545842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.650 kcal (2) G-P(sol) polarization free energy of solvation -83.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds