Wall clock time and date at job start Fri Apr 10 2020 17:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47584 * 2 1 4 4 C 1.53001 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46854 * 305.00205 * 4 3 2 6 6 C 1.52998 * 109.47105 * 64.99902 * 4 3 2 7 7 C 1.52997 * 109.46916 * 185.00125 * 4 3 2 8 8 C 1.50704 * 109.46971 * 174.99823 * 7 4 3 9 9 O 1.21297 * 119.99886 * 0.02562 * 8 7 4 10 10 N 1.34779 * 120.00092 * 179.97438 * 8 7 4 11 11 C 1.40151 * 120.00099 * 180.02562 * 10 8 7 12 12 C 1.40416 * 125.97476 * 0.02562 * 11 10 8 13 13 C 1.35237 * 107.86796 * 179.97438 * 12 11 10 14 14 N 1.34970 * 107.85941 * 0.26441 * 13 12 11 15 15 C 1.46504 * 125.96940 * 179.73198 * 14 13 12 16 16 C 1.50699 * 109.46610 * 125.00265 * 15 14 13 17 17 H 1.08001 * 120.00250 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00163 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99479 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00617 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46688 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47180 * 119.99918 * 20 18 16 23 23 H 1.48504 * 109.47157 * 240.00277 * 20 18 16 24 24 N 1.31213 * 125.97528 * 180.02562 * 11 10 8 25 25 H 1.08996 * 109.47170 * 59.99080 * 1 2 3 26 26 H 1.08994 * 109.47683 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46496 * 300.00264 * 1 2 3 28 28 H 1.09006 * 109.46496 * 239.99736 * 2 1 3 29 29 H 1.08996 * 109.47170 * 120.00919 * 2 1 3 30 30 H 1.08998 * 109.46882 * 60.00615 * 3 2 1 31 31 H 1.09004 * 109.47004 * 300.00442 * 3 2 1 32 32 H 1.08997 * 109.47337 * 300.00257 * 6 4 3 33 33 H 1.09002 * 109.47018 * 60.00403 * 6 4 3 34 34 H 1.09001 * 109.47297 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47179 * 54.99934 * 7 4 3 36 36 H 1.08996 * 109.47294 * 294.99949 * 7 4 3 37 37 H 0.96994 * 119.99525 * 0.02562 * 10 8 7 38 38 H 1.08000 * 126.06023 * 359.97438 * 12 11 10 39 39 H 1.08002 * 126.06518 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.46990 * 244.99353 * 15 14 13 41 41 H 1.08992 * 109.47218 * 5.00271 * 15 14 13 42 42 H 0.97001 * 119.99807 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9337 0.8527 0.8409 6 6 4.0795 0.8328 -1.3083 7 6 4.0802 2.8793 0.1251 8 6 5.5822 2.8701 0.2480 9 8 6.1853 1.8178 0.2358 10 7 6.2554 4.0313 0.3706 11 6 7.6523 4.0228 0.4844 12 6 8.4729 2.8834 0.4848 13 6 9.7547 3.2953 0.6132 14 7 9.7501 4.6424 0.6973 15 6 10.9287 5.4989 0.8509 16 6 10.9516 6.5244 -0.2531 17 1 10.1670 6.5366 -0.9952 18 6 11.9742 7.4471 -0.3159 19 7 12.9294 7.4325 0.5881 20 14 12.0031 8.7178 -1.6848 21 1 10.8244 8.5221 -2.5667 22 1 11.9607 10.0805 -1.0962 23 1 13.2473 8.5605 -2.4801 24 7 8.4219 5.0782 0.6091 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6769 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7160 -0.1908 -1.3979 33 1 3.7159 1.4225 -2.1499 34 1 5.1695 0.8331 -1.3090 35 1 3.6460 3.3428 1.0109 36 1 3.7916 3.4461 -0.7600 37 1 5.7731 4.8728 0.3800 38 1 8.1396 1.8598 0.3980 39 1 10.6266 2.6589 0.6475 40 1 10.8871 6.0046 1.8156 41 1 11.8305 4.8889 0.7990 42 1 13.6486 8.0819 0.5442 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:27 Heat of formation + Delta-G solvation = 16.004736 kcal Electronic energy + Delta-G solvation = -21025.122841 eV Core-core repulsion = 17813.179789 eV Total energy + Delta-G solvation = -3211.943052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70012 -39.49116 -36.96365 -34.71015 -33.36302 -32.91287 -31.01098 -29.32745 -28.29616 -26.81445 -26.46865 -23.34530 -22.42903 -21.34501 -20.40057 -19.81769 -19.45343 -16.94818 -16.61790 -16.45745 -15.88000 -15.40100 -15.28762 -14.57813 -14.32905 -14.11821 -13.91701 -13.63178 -13.47256 -12.76734 -12.50658 -12.43430 -12.29055 -12.16207 -11.93533 -11.75689 -11.67482 -11.18057 -11.04022 -10.93443 -10.81966 -10.78546 -10.64813 -10.38747 -10.26553 -9.93123 -9.49721 -9.43026 -8.64374 -8.11709 -7.45542 -6.25060 -4.29993 2.37125 2.82756 2.95367 3.21714 3.29197 3.35922 3.74403 3.89800 4.31519 4.47920 4.56290 4.64270 4.89798 4.90763 5.04134 5.10141 5.24857 5.31863 5.44410 5.45819 5.54349 5.58598 5.63732 5.69131 5.78234 5.82631 5.92679 5.95468 6.05550 6.24161 6.28728 6.40553 6.50546 6.65119 6.86512 7.05156 7.44360 7.59239 7.71204 7.89006 8.04943 8.31471 8.64760 8.80313 9.35659 10.83707 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.002724 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.523665 B =10275.676196 C =10626.477963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.080 0.920 6 C -0.156 4.156 7 C -0.133 4.133 8 C 0.517 3.483 9 O -0.515 6.515 10 N -0.634 5.634 11 C 0.256 3.744 12 C -0.287 4.287 13 C 0.050 3.950 14 N -0.319 5.319 15 C 0.258 3.742 16 C -0.527 4.527 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.306 5.306 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 -11.654 -0.653 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.098 0.902 6 C -0.213 4.213 7 C -0.173 4.173 8 C 0.304 3.696 9 O -0.389 6.389 10 N -0.281 5.281 11 C 0.003 3.997 12 C -0.319 4.319 13 C -0.100 4.100 14 N -0.101 5.101 15 C 0.140 3.860 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.137 5.137 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.245 0.755 38 H 0.177 0.823 39 H 0.185 0.815 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.581 -10.980 -0.514 22.455 hybrid contribution -0.024 0.462 -0.705 0.843 sum -19.604 -10.518 -1.219 22.281 Atomic orbital electron populations 1.21782 0.96111 1.01457 1.01676 1.21573 0.95495 0.96987 1.02339 1.21683 0.94642 0.96995 1.01988 1.20909 0.94433 0.94013 1.00072 0.90207 1.22014 1.03332 1.00162 0.95777 1.21749 0.91020 1.00077 1.04488 1.20731 0.90030 0.82899 0.75945 1.90606 1.69656 1.30707 1.47976 1.42597 1.03383 1.10085 1.72050 1.19158 0.84052 0.93252 1.03228 1.21523 0.90679 0.99804 1.19870 1.22568 0.99034 0.85987 1.02397 1.49079 1.05081 1.04706 1.51266 1.19748 0.77707 0.89514 0.99009 1.21295 1.09641 1.14260 1.11367 0.91267 1.24959 0.94994 0.97596 0.96631 1.69932 1.12315 1.36578 1.34534 0.86268 0.78085 0.80728 0.81396 1.19576 1.20683 1.20759 1.77324 0.88521 1.20083 1.27771 0.92846 0.92932 0.92864 0.91651 0.92005 0.91972 0.91907 0.92747 0.93417 0.90513 0.88666 0.88638 0.75498 0.82294 0.81538 0.93720 0.92540 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.87 5.69 -26.73 -0.15 -1.02 16 3 C -0.12 -0.81 4.68 -26.73 -0.13 -0.93 16 4 C -0.08 -0.67 2.04 -90.62 -0.18 -0.86 16 5 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 6 C -0.16 -1.54 8.69 37.16 0.32 -1.22 16 7 C -0.13 -1.18 5.17 -27.88 -0.14 -1.32 16 8 C 0.52 7.03 7.51 -10.98 -0.08 6.95 16 9 O -0.52 -8.50 11.10 5.54 0.06 -8.44 16 10 N -0.63 -9.60 5.45 -11.13 -0.06 -9.67 16 11 C 0.26 5.14 8.11 -154.40 -1.25 3.89 16 12 C -0.29 -5.72 9.61 -39.83 -0.38 -6.10 16 13 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 14 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 15 C 0.26 6.59 6.26 -5.19 -0.03 6.55 16 16 C -0.53 -14.73 9.23 -34.44 -0.32 -15.05 16 17 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.90 -25.38 13.29 55.43 0.74 -24.64 16 20 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 N -0.31 -7.08 12.42 31.44 0.39 -6.69 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.97 5.95 -51.93 -0.31 0.66 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.41 5.02 8.82 -40.82 -0.36 4.66 16 38 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 39 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 40 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -31.85 346.02 -7.87 -39.72 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.69 Total: 3.11 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.28 Total: -7.25 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.84 Total: -48.72 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.06 Total: -8.44 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.85 -7.87 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.725 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds