Wall clock time and date at job start Fri Apr 10 2020 17:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47584 * 2 1 4 4 C 1.53001 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46854 * 305.00205 * 4 3 2 6 6 C 1.52998 * 109.47105 * 64.99902 * 4 3 2 7 7 C 1.52997 * 109.46916 * 185.00125 * 4 3 2 8 8 C 1.50704 * 109.46971 * 174.99823 * 7 4 3 9 9 O 1.21297 * 119.99886 * 0.02562 * 8 7 4 10 10 N 1.34779 * 120.00092 * 179.97438 * 8 7 4 11 11 C 1.40151 * 120.00099 * 180.02562 * 10 8 7 12 12 C 1.40416 * 125.97476 * 0.02562 * 11 10 8 13 13 C 1.35237 * 107.86796 * 179.97438 * 12 11 10 14 14 N 1.34970 * 107.85941 * 0.26441 * 13 12 11 15 15 C 1.46504 * 125.96940 * 179.73198 * 14 13 12 16 16 C 1.50699 * 109.46610 * 125.00265 * 15 14 13 17 17 H 1.08001 * 120.00250 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00163 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99479 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00617 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46688 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47180 * 119.99918 * 20 18 16 23 23 H 1.48504 * 109.47157 * 240.00277 * 20 18 16 24 24 N 1.31213 * 125.97528 * 180.02562 * 11 10 8 25 25 H 1.08996 * 109.47170 * 59.99080 * 1 2 3 26 26 H 1.08994 * 109.47683 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46496 * 300.00264 * 1 2 3 28 28 H 1.09006 * 109.46496 * 239.99736 * 2 1 3 29 29 H 1.08996 * 109.47170 * 120.00919 * 2 1 3 30 30 H 1.08998 * 109.46882 * 60.00615 * 3 2 1 31 31 H 1.09004 * 109.47004 * 300.00442 * 3 2 1 32 32 H 1.08997 * 109.47337 * 300.00257 * 6 4 3 33 33 H 1.09002 * 109.47018 * 60.00403 * 6 4 3 34 34 H 1.09001 * 109.47297 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47179 * 54.99934 * 7 4 3 36 36 H 1.08996 * 109.47294 * 294.99949 * 7 4 3 37 37 H 0.96994 * 119.99525 * 0.02562 * 10 8 7 38 38 H 1.08000 * 126.06023 * 359.97438 * 12 11 10 39 39 H 1.08002 * 126.06518 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.46990 * 244.99353 * 15 14 13 41 41 H 1.08992 * 109.47218 * 5.00271 * 15 14 13 42 42 H 0.97001 * 119.99807 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9337 0.8527 0.8409 6 6 4.0795 0.8328 -1.3083 7 6 4.0802 2.8793 0.1251 8 6 5.5822 2.8701 0.2480 9 8 6.1853 1.8178 0.2358 10 7 6.2554 4.0313 0.3706 11 6 7.6523 4.0228 0.4844 12 6 8.4729 2.8834 0.4848 13 6 9.7547 3.2953 0.6132 14 7 9.7501 4.6424 0.6973 15 6 10.9287 5.4989 0.8509 16 6 10.9516 6.5244 -0.2531 17 1 10.1670 6.5366 -0.9952 18 6 11.9742 7.4471 -0.3159 19 7 12.9294 7.4325 0.5881 20 14 12.0031 8.7178 -1.6848 21 1 10.8244 8.5221 -2.5667 22 1 11.9607 10.0805 -1.0962 23 1 13.2473 8.5605 -2.4801 24 7 8.4219 5.0782 0.6091 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6769 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7160 -0.1908 -1.3979 33 1 3.7159 1.4225 -2.1499 34 1 5.1695 0.8331 -1.3090 35 1 3.6460 3.3428 1.0109 36 1 3.7916 3.4461 -0.7600 37 1 5.7731 4.8728 0.3800 38 1 8.1396 1.8598 0.3980 39 1 10.6266 2.6589 0.6475 40 1 10.8871 6.0046 1.8156 41 1 11.8305 4.8889 0.7990 42 1 13.6486 8.0819 0.5442 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:26 Heat of formation + Delta-G solvation = -2.441588 kcal Electronic energy + Delta-G solvation = -21025.922734 eV Core-core repulsion = 17813.179789 eV Total energy + Delta-G solvation = -3212.742944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.20347 -40.73355 -37.71523 -36.15444 -35.25334 -33.61027 -32.75206 -30.96401 -29.37218 -28.21115 -27.40222 -25.06748 -23.52814 -22.45304 -21.71449 -20.88385 -20.63348 -18.70120 -18.26213 -17.79805 -17.02475 -16.75962 -16.32481 -16.07824 -15.65049 -15.38243 -14.86088 -14.59756 -14.39316 -14.21290 -14.15063 -13.81344 -13.70061 -13.17189 -12.97408 -12.84227 -12.72955 -12.55858 -12.32105 -12.31855 -12.01930 -11.77195 -11.68499 -11.46348 -11.44094 -11.35832 -11.21766 -10.73873 -10.63306 -9.74525 -9.10478 -8.34185 -6.48408 0.98357 1.36712 1.37244 1.42315 1.50698 1.52718 2.27200 2.31071 2.46587 2.97352 3.62964 3.81212 3.99142 4.02555 4.26544 4.27960 4.33572 4.46788 4.61469 4.73819 4.78100 4.80194 4.85807 4.90836 4.92841 4.98368 5.02132 5.03307 5.11330 5.18418 5.24012 5.30691 5.38453 5.48041 5.55779 5.60821 5.64356 5.79017 5.96836 6.26120 6.33879 6.64160 7.04878 7.20887 7.21650 8.73618 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.002724 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.523665 B =10275.676196 C =10626.477963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.073 4.073 5 H 0.062 0.938 6 C -0.154 4.154 7 C -0.123 4.123 8 C 0.515 3.485 9 O -0.545 6.545 10 N -0.629 5.629 11 C 0.265 3.735 12 C -0.294 4.294 13 C 0.053 3.947 14 N -0.345 5.345 15 C 0.272 3.728 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.974 3.026 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.270 1.270 24 N -0.348 5.348 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.424 0.576 38 H 0.167 0.833 39 H 0.199 0.801 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 -11.507 -1.417 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.092 4.092 5 H 0.081 0.919 6 C -0.211 4.211 7 C -0.163 4.163 8 C 0.304 3.696 9 O -0.421 6.421 10 N -0.279 5.279 11 C 0.010 3.990 12 C -0.325 4.325 13 C -0.095 4.095 14 N -0.127 5.127 15 C 0.153 3.847 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.798 3.202 21 H -0.199 1.199 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.179 5.179 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.262 0.738 38 H 0.185 0.815 39 H 0.216 0.784 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.464 -10.844 -1.273 24.081 hybrid contribution 0.466 0.282 -0.451 0.708 sum -20.998 -10.562 -1.724 23.568 Atomic orbital electron populations 1.21768 0.95330 1.01736 1.02054 1.21582 0.96174 0.96977 1.01878 1.21627 0.92712 0.97192 1.03041 1.20887 0.95903 0.93672 0.98730 0.91911 1.21976 1.01246 1.00999 0.96907 1.21849 0.86796 1.00640 1.06966 1.21741 0.91831 0.81746 0.74274 1.90593 1.70716 1.31745 1.49003 1.42839 1.01366 1.11643 1.72059 1.19557 0.86137 0.92529 1.00772 1.21723 0.90691 1.00127 1.19983 1.23169 1.00521 0.85087 1.00731 1.48837 1.04827 1.05479 1.53593 1.19337 0.78812 0.89373 0.97158 1.21417 1.09562 1.15636 1.11825 0.93014 1.25770 0.94432 0.99288 0.98875 1.70007 1.12752 1.37378 1.35813 0.85271 0.78189 0.78304 0.78468 1.19915 1.19759 1.19503 1.77241 0.88770 1.21738 1.30192 0.92435 0.92793 0.92487 0.92091 0.92602 0.90818 0.90879 0.92248 0.92362 0.93594 0.85788 0.86138 0.73847 0.81537 0.78374 0.96075 0.92438 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.13 -1.53 5.69 30.59 0.17 -1.35 16 3 C -0.11 -1.20 4.68 30.59 0.14 -1.06 16 4 C -0.07 -1.15 2.04 -10.79 -0.02 -1.17 16 5 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 6 C -0.15 -2.86 8.69 71.98 0.63 -2.24 16 7 C -0.12 -1.81 5.17 29.85 0.15 -1.66 16 8 C 0.51 13.25 7.51 87.66 0.66 13.90 16 9 O -0.54 -17.71 11.10 -3.08 -0.03 -17.74 16 10 N -0.63 -18.36 5.45 -307.50 -1.68 -20.03 16 11 C 0.26 10.59 8.11 133.33 1.08 11.67 16 12 C -0.29 -11.64 9.61 22.11 0.21 -11.43 16 13 C 0.05 2.15 11.44 83.52 0.96 3.11 16 14 N -0.35 -16.50 3.67 -351.85 -1.29 -17.79 16 15 C 0.27 14.30 6.26 85.63 0.54 14.84 16 16 C -0.55 -31.11 9.23 25.60 0.24 -30.88 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.02 0.92 5.46 84.65 0.46 1.39 16 19 N -0.92 -52.43 13.29 21.45 0.28 -52.14 16 20 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 N -0.35 -16.38 12.42 -54.45 -0.68 -17.06 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.06 0.77 6.56 -2.38 -0.02 0.75 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.01 6.56 -2.39 -0.02 0.99 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.15 5.95 -2.39 -0.01 1.13 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.42 9.72 8.82 -92.71 -0.82 8.90 16 38 H 0.17 6.34 5.91 -2.91 -0.02 6.33 16 39 H 0.20 6.36 8.06 -2.91 -0.02 6.33 16 40 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -69.61 346.02 4.76 -64.86 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.19 Total: 19.77 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.93 Total: -5.66 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -3.36 Total: -107.03 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.03 Total: -17.74 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.61 4.76 -64.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.416 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds