Wall clock time and date at job start Fri Apr 10 2020 17:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 C 1.53005 * 109.46958 * 65.00125 * 3 2 1 5 5 C 1.52994 * 109.47394 * 184.55140 * 4 3 2 6 6 N 1.46496 * 109.47668 * 185.00180 * 3 2 1 7 7 N 1.28443 * 125.19140 * 305.13282 * 6 3 2 8 8 C 1.30876 * 110.94990 * 180.14471 * 7 6 3 9 9 C 1.39646 * 107.87949 * 359.55122 * 8 7 6 10 10 C 1.36644 * 125.19530 * 124.77276 * 6 3 2 11 11 C 1.47019 * 126.89669 * 0.02562 * 10 6 3 12 12 O 1.21673 * 119.99703 * 351.14023 * 11 10 6 13 13 N 1.34775 * 120.00034 * 171.13304 * 11 10 6 14 14 C 1.36841 * 120.00337 * 181.21610 * 13 11 10 15 15 H 1.08002 * 119.99709 * 15.51424 * 14 13 11 16 16 C 1.39049 * 120.00467 * 195.51647 * 14 13 11 17 17 N 1.31360 * 119.99814 * 11.89477 * 16 14 13 18 18 Si 1.86801 * 120.00124 * 191.89988 * 16 14 13 19 19 H 1.48505 * 109.47091 * 59.99525 * 18 16 14 20 20 H 1.48496 * 109.47181 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46890 * 300.00109 * 18 16 14 22 22 C 1.46500 * 120.00056 * 1.22210 * 13 11 10 23 23 C 1.52999 * 109.47223 * 81.84145 * 22 13 11 24 24 H 1.09003 * 109.47132 * 299.99288 * 1 2 3 25 25 H 1.08994 * 109.47566 * 59.99715 * 1 2 3 26 26 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47132 * 240.00712 * 2 1 3 28 28 H 1.08994 * 109.47566 * 120.00285 * 2 1 3 29 29 H 1.09003 * 109.47392 * 305.00876 * 3 2 1 30 30 H 1.09001 * 109.47009 * 304.55210 * 4 3 2 31 31 H 1.09007 * 109.47139 * 64.55205 * 4 3 2 32 32 H 1.09000 * 109.47643 * 184.88071 * 5 4 3 33 33 H 1.09002 * 109.47326 * 304.88395 * 5 4 3 34 34 H 1.09006 * 109.47148 * 64.88027 * 5 4 3 35 35 H 1.07999 * 126.06480 * 179.81070 * 8 7 6 36 36 H 1.08000 * 127.32543 * 180.28637 * 9 8 7 37 37 H 0.97002 * 120.00077 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47057 * 201.84298 * 22 13 11 39 39 H 1.09003 * 109.47244 * 321.84271 * 22 13 11 40 40 H 1.09002 * 109.47281 * 65.59571 * 23 22 13 41 41 H 1.09005 * 109.47047 * 185.60035 * 23 22 13 42 42 H 1.09006 * 109.47003 * 305.59464 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0453 3.5997 1.2605 6 7 3.5000 1.4444 -0.1204 7 7 4.3076 0.8166 0.6564 8 6 5.5506 1.0136 0.2970 9 6 5.5457 1.8419 -0.8272 10 6 4.2102 2.1086 -1.0804 11 6 3.6661 2.9394 -2.1645 12 8 2.4672 2.9614 -2.3709 13 7 4.4953 3.6767 -2.9295 14 6 3.9867 4.4691 -3.9225 15 1 2.9326 4.7038 -3.9395 16 6 4.8270 4.9722 -4.9096 17 7 6.0498 4.5079 -5.0305 18 14 4.2169 6.3086 -6.0635 19 1 3.8328 7.5065 -5.2744 20 1 5.2963 6.6698 -7.0172 21 1 3.0367 5.8121 -6.8157 22 6 5.9411 3.6297 -2.6982 23 6 6.5281 2.3963 -3.3876 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5553 2.0539 1.4362 31 1 2.1346 1.6368 2.1435 32 1 1.8360 4.0661 2.2232 33 1 3.1113 3.6735 1.0452 34 1 1.4809 4.1094 0.4796 35 1 6.4249 0.6043 0.7813 36 1 6.4012 2.1983 -1.3817 37 1 6.6361 4.8591 -5.7189 38 1 6.4037 4.5284 -3.1059 39 1 6.1362 3.5745 -1.6272 40 1 6.4213 2.4984 -4.4675 41 1 7.5843 2.3064 -3.1337 42 1 5.9968 1.5055 -3.0525 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120139245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:42 Heat of formation + Delta-G solvation = 66.527543 kcal Electronic energy + Delta-G solvation = -23364.702479 eV Core-core repulsion = 20154.950261 eV Total energy + Delta-G solvation = -3209.752218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94409 -38.37591 -36.68306 -35.18043 -32.33472 -31.68860 -30.72512 -30.27735 -29.12665 -26.04682 -25.22244 -22.71063 -22.55538 -21.80716 -21.54976 -20.15949 -18.46860 -17.10845 -16.33896 -15.79934 -15.49733 -14.71279 -14.61191 -14.33497 -14.10287 -13.89987 -13.56761 -13.33376 -13.22658 -12.53188 -12.17314 -12.06441 -11.86569 -11.79446 -11.54117 -11.39799 -11.23754 -11.14379 -10.89649 -10.80587 -10.64007 -10.46372 -10.41144 -10.25720 -10.10733 -9.74195 -9.01213 -8.52118 -8.48989 -8.16316 -7.79156 -6.39865 -3.94223 2.15187 3.04988 3.13926 3.18316 3.23053 3.28473 4.02819 4.24765 4.71512 4.76988 4.98739 5.09202 5.24536 5.31473 5.37150 5.48318 5.49956 5.61359 5.81773 5.82923 5.87893 5.98414 6.02852 6.13920 6.19289 6.20827 6.25497 6.32124 6.44019 6.45790 6.55022 6.61262 6.66476 6.80105 7.19855 7.28303 7.41074 7.48573 7.71986 7.97364 8.39767 8.76263 9.04890 9.28953 9.86418 10.53918 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020865 B = 0.005954 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.663847 B = 4701.442937 C = 5393.243186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.136 3.864 4 C -0.128 4.128 5 C -0.151 4.151 6 N -0.259 5.259 7 N -0.301 5.301 8 C -0.019 4.019 9 C -0.239 4.239 10 C 0.007 3.993 11 C 0.495 3.505 12 O -0.599 6.599 13 N -0.408 5.408 14 C -0.296 4.296 15 H 0.105 0.895 16 C 0.029 3.971 17 N -0.866 5.866 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.097 3.903 23 C -0.157 4.157 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.270 0.730 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.040 0.960 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -4.100 8.263 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.035 3.965 4 C -0.166 4.166 5 C -0.209 4.209 6 N -0.046 5.046 7 N -0.133 5.133 8 C -0.195 4.195 9 C -0.267 4.267 10 C -0.122 4.122 11 C 0.284 3.716 12 O -0.488 6.488 13 N -0.124 5.124 14 C -0.425 4.425 15 H 0.123 0.877 16 C -0.175 4.175 17 N -0.505 5.505 18 Si 0.759 3.241 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.026 4.026 23 C -0.215 4.215 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.191 0.809 36 H 0.200 0.800 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.084 -4.566 8.813 10.394 hybrid contribution 0.621 0.870 -1.156 1.574 sum -2.462 -3.697 7.657 8.852 Atomic orbital electron populations 1.21784 0.94639 1.01889 1.02397 1.21758 0.96392 0.95270 1.03008 1.22135 0.74045 0.98282 1.02040 1.21899 1.01612 0.96478 0.96656 1.21737 1.02133 0.95557 1.01425 1.45688 1.06813 1.33193 1.18945 1.72937 1.01705 1.19040 1.19591 1.23429 0.94081 1.03078 0.98950 1.23411 0.96770 1.05180 1.01342 1.21857 0.91647 1.02722 0.95973 1.16651 0.86494 0.83533 0.84940 1.90510 1.14816 1.69443 1.73983 1.43466 1.05740 1.35323 1.27827 1.19773 0.96278 1.23471 1.02942 0.87730 1.25373 0.95710 0.98821 0.97580 1.69999 1.07097 1.40329 1.33089 0.85886 0.78358 0.80519 0.79333 1.19807 1.20766 1.19733 1.22153 0.81333 1.02054 0.97086 1.22279 0.97708 0.96420 1.05045 0.92285 0.92024 0.92385 0.91580 0.91043 0.84187 0.90170 0.91220 0.92876 0.92864 0.92010 0.80942 0.79984 0.91933 0.87234 0.92794 0.88981 0.94087 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 37.16 0.36 -1.40 16 2 C -0.13 -1.86 5.50 -26.73 -0.15 -2.00 16 3 C 0.14 2.34 2.42 -67.93 -0.16 2.18 16 4 C -0.13 -1.88 5.40 -26.73 -0.14 -2.03 16 5 C -0.15 -2.38 9.85 37.15 0.37 -2.01 16 6 N -0.26 -5.05 2.46 -50.69 -0.12 -5.18 16 7 N -0.30 -5.59 11.56 30.58 0.35 -5.23 16 8 C -0.02 -0.32 12.03 -17.43 -0.21 -0.53 16 9 C -0.24 -4.56 7.44 -38.95 -0.29 -4.85 16 10 C 0.01 0.14 6.54 -82.06 -0.54 -0.40 16 11 C 0.50 12.37 7.49 -12.70 -0.10 12.27 16 12 O -0.60 -16.11 14.06 5.21 0.07 -16.04 16 13 N -0.41 -10.29 2.64 -116.18 -0.31 -10.60 16 14 C -0.30 -7.90 9.42 -15.02 -0.14 -8.04 16 15 H 0.10 2.91 7.30 -52.49 -0.38 2.53 16 16 C 0.03 0.71 5.14 -17.45 -0.09 0.62 16 17 N -0.87 -21.12 8.13 55.50 0.45 -20.67 16 18 Si 0.93 19.70 29.57 -169.99 -5.03 14.68 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.10 2.13 4.79 -4.04 -0.02 2.11 16 23 C -0.16 -3.23 8.09 37.16 0.30 -2.93 16 24 H 0.06 0.61 6.47 -51.93 -0.34 0.28 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.14 2.81 5.35 -51.93 -0.28 2.53 16 30 H 0.08 0.98 6.36 -51.93 -0.33 0.65 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.97 7.48 -51.93 -0.39 0.58 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.18 3.29 3.42 -52.49 -0.18 3.11 16 37 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 38 H 0.11 2.57 5.77 -51.93 -0.30 2.27 16 39 H 0.05 1.09 4.86 -51.93 -0.25 0.84 16 40 H 0.09 2.15 6.21 -51.93 -0.32 1.82 16 41 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 42 H 0.04 0.76 6.26 -51.93 -0.33 0.43 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -28.45 324.50 -6.54 -34.99 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.03 Total: 10.18 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.81 Total: -7.01 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.37 Total: -41.68 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.07 Total: -16.04 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.45 -6.54 -34.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120139245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.514 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds