Wall clock time and date at job start Fri Apr 10 2020 17:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 C 1.53005 * 109.46958 * 65.00125 * 3 2 1 5 5 C 1.52994 * 109.47394 * 184.55140 * 4 3 2 6 6 N 1.46496 * 109.47668 * 185.00180 * 3 2 1 7 7 N 1.28443 * 125.19140 * 305.13282 * 6 3 2 8 8 C 1.30876 * 110.94990 * 180.14471 * 7 6 3 9 9 C 1.39646 * 107.87949 * 359.55122 * 8 7 6 10 10 C 1.36644 * 125.19530 * 124.77276 * 6 3 2 11 11 C 1.47019 * 126.89669 * 0.02562 * 10 6 3 12 12 O 1.21673 * 119.99703 * 351.14023 * 11 10 6 13 13 N 1.34775 * 120.00034 * 171.13304 * 11 10 6 14 14 C 1.36841 * 120.00337 * 181.21610 * 13 11 10 15 15 H 1.08002 * 119.99709 * 15.51424 * 14 13 11 16 16 C 1.39049 * 120.00467 * 195.51647 * 14 13 11 17 17 N 1.31360 * 119.99814 * 11.89477 * 16 14 13 18 18 Si 1.86801 * 120.00124 * 191.89988 * 16 14 13 19 19 H 1.48505 * 109.47091 * 59.99525 * 18 16 14 20 20 H 1.48496 * 109.47181 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46890 * 300.00109 * 18 16 14 22 22 C 1.46500 * 120.00056 * 1.22210 * 13 11 10 23 23 C 1.52999 * 109.47223 * 81.84145 * 22 13 11 24 24 H 1.09003 * 109.47132 * 299.99288 * 1 2 3 25 25 H 1.08994 * 109.47566 * 59.99715 * 1 2 3 26 26 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47132 * 240.00712 * 2 1 3 28 28 H 1.08994 * 109.47566 * 120.00285 * 2 1 3 29 29 H 1.09003 * 109.47392 * 305.00876 * 3 2 1 30 30 H 1.09001 * 109.47009 * 304.55210 * 4 3 2 31 31 H 1.09007 * 109.47139 * 64.55205 * 4 3 2 32 32 H 1.09000 * 109.47643 * 184.88071 * 5 4 3 33 33 H 1.09002 * 109.47326 * 304.88395 * 5 4 3 34 34 H 1.09006 * 109.47148 * 64.88027 * 5 4 3 35 35 H 1.07999 * 126.06480 * 179.81070 * 8 7 6 36 36 H 1.08000 * 127.32543 * 180.28637 * 9 8 7 37 37 H 0.97002 * 120.00077 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47057 * 201.84298 * 22 13 11 39 39 H 1.09003 * 109.47244 * 321.84271 * 22 13 11 40 40 H 1.09002 * 109.47281 * 65.59571 * 23 22 13 41 41 H 1.09005 * 109.47047 * 185.60035 * 23 22 13 42 42 H 1.09006 * 109.47003 * 305.59464 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0453 3.5997 1.2605 6 7 3.5000 1.4444 -0.1204 7 7 4.3076 0.8166 0.6564 8 6 5.5506 1.0136 0.2970 9 6 5.5457 1.8419 -0.8272 10 6 4.2102 2.1086 -1.0804 11 6 3.6661 2.9394 -2.1645 12 8 2.4672 2.9614 -2.3709 13 7 4.4953 3.6767 -2.9295 14 6 3.9867 4.4691 -3.9225 15 1 2.9326 4.7038 -3.9395 16 6 4.8270 4.9722 -4.9096 17 7 6.0498 4.5079 -5.0305 18 14 4.2169 6.3086 -6.0635 19 1 3.8328 7.5065 -5.2744 20 1 5.2963 6.6698 -7.0172 21 1 3.0367 5.8121 -6.8157 22 6 5.9411 3.6297 -2.6982 23 6 6.5281 2.3963 -3.3876 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5553 2.0539 1.4362 31 1 2.1346 1.6368 2.1435 32 1 1.8360 4.0661 2.2232 33 1 3.1113 3.6735 1.0452 34 1 1.4809 4.1094 0.4796 35 1 6.4249 0.6043 0.7813 36 1 6.4012 2.1983 -1.3817 37 1 6.6361 4.8591 -5.7189 38 1 6.4037 4.5284 -3.1059 39 1 6.1362 3.5745 -1.6272 40 1 6.4213 2.4984 -4.4675 41 1 7.5843 2.3064 -3.1337 42 1 5.9968 1.5055 -3.0525 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120139245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:41 Heat of formation + Delta-G solvation = 51.056513 kcal Electronic energy + Delta-G solvation = -23365.373353 eV Core-core repulsion = 20154.950261 eV Total energy + Delta-G solvation = -3210.423092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.44477 -40.23120 -38.03493 -37.01176 -34.18254 -32.84901 -32.27995 -31.90323 -30.80431 -27.41601 -27.00536 -24.32328 -23.89315 -23.28045 -23.14878 -21.69803 -19.92336 -19.02012 -18.04830 -17.47081 -16.98386 -16.44626 -16.07547 -15.86746 -15.61085 -15.46355 -15.00900 -14.95117 -14.60939 -14.06359 -13.72585 -13.41691 -13.40681 -13.15424 -12.99518 -12.90276 -12.86674 -12.69050 -12.47259 -12.18422 -12.09688 -12.05135 -11.90041 -11.81617 -11.62617 -11.33503 -10.88037 -10.40484 -9.98430 -9.78717 -9.61911 -8.30084 -5.94369 0.51723 1.42508 1.44471 1.51358 1.64174 1.84710 2.26901 2.41820 2.99947 3.13719 3.45569 3.77761 3.85174 3.97980 4.10292 4.18475 4.32432 4.37329 4.45033 4.47387 4.58897 4.66430 4.72578 4.84656 4.86204 4.89177 4.90825 4.98559 5.02876 5.06980 5.13739 5.16882 5.26489 5.33051 5.37902 5.52704 5.74116 5.93471 6.01720 6.03802 6.48874 7.08947 7.27671 7.39727 7.95292 8.61607 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020865 B = 0.005954 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.663847 B = 4701.442937 C = 5393.243186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.126 3.874 4 C -0.119 4.119 5 C -0.147 4.147 6 N -0.259 5.259 7 N -0.299 5.299 8 C -0.011 4.011 9 C -0.230 4.230 10 C -0.030 4.030 11 C 0.484 3.516 12 O -0.634 6.634 13 N -0.420 5.420 14 C -0.341 4.341 15 H 0.077 0.923 16 C 0.003 3.997 17 N -0.868 5.868 18 Si 0.993 3.007 19 H -0.271 1.271 20 H -0.266 1.266 21 H -0.278 1.278 22 C 0.100 3.900 23 C -0.143 4.143 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.042 0.958 35 H 0.218 0.782 36 H 0.193 0.807 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -4.810 9.733 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.025 3.975 4 C -0.157 4.157 5 C -0.204 4.204 6 N -0.046 5.046 7 N -0.130 5.130 8 C -0.187 4.187 9 C -0.258 4.258 10 C -0.158 4.158 11 C 0.274 3.726 12 O -0.524 6.524 13 N -0.136 5.136 14 C -0.469 4.469 15 H 0.095 0.905 16 C -0.200 4.200 17 N -0.505 5.505 18 Si 0.816 3.184 19 H -0.196 1.196 20 H -0.190 1.190 21 H -0.204 1.204 22 C -0.022 4.022 23 C -0.201 4.201 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.234 0.766 36 H 0.209 0.791 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.139 -5.284 10.285 11.759 hybrid contribution 0.375 1.051 -1.583 1.937 sum -1.764 -4.233 8.702 9.837 Atomic orbital electron populations 1.21777 0.92305 1.03369 1.02739 1.21720 0.98350 0.93213 1.02317 1.22269 0.73186 0.99843 1.02171 1.21892 1.03470 0.95118 0.95186 1.21698 0.99772 0.96747 1.02225 1.45907 1.07608 1.32692 1.18433 1.72946 1.02277 1.18582 1.19229 1.24100 0.94828 1.01841 0.97935 1.23569 0.95809 1.04757 1.01698 1.21598 0.93138 1.04370 0.96695 1.17170 0.86231 0.83598 0.85590 1.90471 1.16277 1.70599 1.75093 1.43661 1.06955 1.35278 1.27663 1.19691 0.95752 1.26307 1.05179 0.90493 1.26044 0.95864 0.99940 0.98143 1.70078 1.07283 1.40087 1.33090 0.85004 0.77966 0.77876 0.77504 1.19587 1.19007 1.20396 1.22228 0.79705 1.01997 0.98308 1.22116 0.99689 0.95391 1.02891 0.90301 0.93313 0.90340 0.93816 0.89978 0.87601 0.87240 0.90327 0.90025 0.95851 0.93906 0.76575 0.79059 0.91270 0.88735 0.90833 0.91749 0.90536 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.67 71.98 0.70 -2.50 16 2 C -0.12 -3.39 5.50 30.59 0.17 -3.22 16 3 C 0.13 4.37 2.42 44.99 0.11 4.48 16 4 C -0.12 -3.33 5.40 30.59 0.17 -3.17 16 5 C -0.15 -4.62 9.85 71.98 0.71 -3.91 16 6 N -0.26 -10.07 2.46 -314.30 -0.77 -10.84 16 7 N -0.30 -10.52 11.56 -57.15 -0.66 -11.18 16 8 C -0.01 -0.35 12.03 85.18 1.02 0.68 16 9 C -0.23 -8.48 7.44 22.68 0.17 -8.31 16 10 C -0.03 -1.31 6.54 40.77 0.27 -1.04 16 11 C 0.48 25.38 7.49 86.55 0.65 26.03 16 12 O -0.63 -36.44 14.06 -4.26 -0.06 -36.50 16 13 N -0.42 -22.06 2.64 -639.71 -1.69 -23.75 16 14 C -0.34 -19.07 9.42 84.11 0.79 -18.28 16 15 H 0.08 4.60 7.30 -2.91 -0.02 4.58 16 16 C 0.00 0.17 5.14 84.96 0.44 0.61 16 17 N -0.87 -42.42 8.13 21.68 0.18 -42.24 16 18 Si 0.99 40.83 29.57 68.60 2.03 42.86 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.10 4.42 4.79 86.38 0.41 4.83 16 23 C -0.14 -5.81 8.09 71.98 0.58 -5.23 16 24 H 0.08 1.43 6.47 -2.39 -0.02 1.41 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.11 4.49 5.35 -2.39 -0.01 4.48 16 30 H 0.11 2.41 6.36 -2.39 -0.02 2.40 16 31 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.02 0.84 7.48 -2.39 -0.02 0.83 16 34 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.22 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.19 6.55 3.42 -2.91 -0.01 6.54 16 37 H 0.28 12.62 8.31 -92.71 -0.77 11.85 16 38 H 0.09 4.47 5.77 -2.39 -0.01 4.46 16 39 H 0.07 2.94 4.86 -2.39 -0.01 2.93 16 40 H 0.06 3.00 6.21 -2.39 -0.01 2.98 16 41 H 0.08 2.51 8.13 -2.38 -0.02 2.49 16 42 H 0.03 1.31 6.26 -2.38 -0.01 1.30 16 Total: -1.00 -64.94 324.50 6.23 -58.71 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 1.02 Total: 31.96 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 6.18 Total: -9.01 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.95 Total: -88.01 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.06 Total: -36.50 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -64.94 6.23 -58.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120139245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.765 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds