Wall clock time and date at job start Fri Apr 10 2020 17:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.52996 * 109.47217 * 175.50619 * 3 2 1 5 5 C 1.53001 * 109.47115 * 294.19342 * 4 3 2 6 6 N 1.46497 * 109.47552 * 295.51097 * 3 2 1 7 7 N 1.28444 * 125.18959 * 305.64452 * 6 3 2 8 8 C 1.30856 * 110.92983 * 179.97438 * 7 6 3 9 9 C 1.39680 * 107.86100 * 359.77251 * 8 7 6 10 10 C 1.36603 * 125.19229 * 125.61843 * 6 3 2 11 11 C 1.47156 * 126.87977 * 359.97438 * 10 6 3 12 12 O 1.21630 * 120.00718 * 5.96543 * 11 10 6 13 13 N 1.34777 * 119.99878 * 185.95974 * 11 10 6 14 14 C 1.46502 * 120.00420 * 175.07292 * 13 11 10 15 15 H 1.08998 * 109.46587 * 35.00395 * 14 13 11 16 16 C 1.52997 * 109.46871 * 275.00051 * 14 13 11 17 17 C 1.50707 * 109.47069 * 154.99981 * 14 13 11 18 18 H 1.07995 * 119.99679 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99741 * 179.97438 * 17 14 13 20 20 N 1.31522 * 119.99981 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99870 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47214 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46775 * 120.00686 * 21 19 17 24 24 H 1.48501 * 109.47094 * 239.99926 * 21 19 17 25 25 H 1.09000 * 109.46918 * 185.02765 * 1 2 3 26 26 H 1.08994 * 109.46697 * 305.02690 * 1 2 3 27 27 H 1.08998 * 109.46932 * 65.03274 * 1 2 3 28 28 H 1.09002 * 109.46967 * 240.00584 * 2 1 3 29 29 H 1.08997 * 109.46971 * 120.00567 * 2 1 3 30 30 H 1.09007 * 109.46611 * 55.51336 * 3 2 1 31 31 H 1.09004 * 109.46927 * 54.18476 * 4 3 2 32 32 H 1.08997 * 109.47343 * 174.18877 * 4 3 2 33 33 H 1.08996 * 109.47596 * 65.53223 * 5 4 3 34 34 H 1.09006 * 109.47281 * 185.53377 * 5 4 3 35 35 H 1.08998 * 109.47227 * 305.52749 * 5 4 3 36 36 H 1.07997 * 126.07173 * 180.02562 * 8 7 6 37 37 H 1.07995 * 127.32263 * 180.23693 * 9 8 7 38 38 H 0.97010 * 119.99833 * 355.07162 * 13 11 10 39 39 H 1.08998 * 109.47321 * 299.99363 * 16 14 13 40 40 H 1.09000 * 109.46866 * 179.97438 * 16 14 13 41 41 H 1.08994 * 109.47361 * 60.00365 * 16 14 13 42 42 H 0.97003 * 119.99739 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5658 1.4440 0.1130 5 6 3.9767 0.8879 1.4779 6 7 1.6420 2.1013 -1.2465 7 7 1.8917 1.6630 -2.4278 8 6 1.4083 2.4698 -3.3375 9 6 0.7809 3.5304 -2.6798 10 6 0.9483 3.2751 -1.3299 11 6 0.4691 4.0992 -0.2089 12 8 0.7744 3.8105 0.9325 13 7 -0.3081 5.1743 -0.4470 14 6 -0.8740 5.9315 0.6723 15 1 -0.1645 5.9415 1.4996 16 6 -2.1779 5.2725 1.1263 17 6 -1.1524 7.3458 0.2322 18 1 -0.9305 7.6499 -0.7800 19 6 -1.6914 8.2509 1.1216 20 7 -1.9621 7.8803 2.3542 21 14 -2.0359 10.0041 0.5764 22 1 -1.6449 10.1657 -0.8469 23 1 -3.4846 10.2937 0.7274 24 1 -1.2528 10.9464 1.4155 25 1 -0.3633 -1.0237 0.0901 26 1 -0.3632 0.5898 0.8415 27 1 -0.3633 0.4338 -0.9316 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6125 1.9790 0.8471 31 1 3.9891 0.8214 -0.6753 32 1 3.9368 2.4636 0.0094 33 1 3.6920 -0.1622 1.5431 34 1 5.0562 0.9798 1.5977 35 1 3.4747 1.4500 2.2653 36 1 1.4780 2.3370 -4.4070 37 1 0.2747 4.3720 -3.1291 38 1 -0.4929 5.4467 -1.3595 39 1 -2.8874 5.2626 0.2989 40 1 -2.5987 5.8357 1.9594 41 1 -1.9765 4.2498 1.4446 42 1 -2.3410 8.5173 2.9800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120419463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:47 Heat of formation + Delta-G solvation = 19.224853 kcal Electronic energy + Delta-G solvation = -22496.779006 eV Core-core repulsion = 19284.975589 eV Total energy + Delta-G solvation = -3211.803417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.35517 -38.64792 -36.88507 -34.88384 -32.56864 -31.91329 -31.13427 -30.77412 -28.60522 -26.31411 -25.31368 -23.27267 -22.91209 -22.11797 -21.01196 -19.65378 -19.33906 -17.91151 -16.25289 -15.87932 -15.62472 -15.19315 -14.85139 -14.51004 -14.26553 -14.17351 -13.80439 -13.55417 -13.26074 -12.93940 -12.48982 -12.37183 -12.17272 -11.99812 -11.79180 -11.56350 -11.19107 -11.09122 -11.01459 -10.99668 -10.77659 -10.68849 -10.49107 -10.34855 -10.27925 -9.24629 -9.10213 -8.94550 -8.78502 -8.60254 -8.00799 -6.16754 -4.25958 1.64608 2.61941 2.84098 3.22099 3.30165 3.32961 3.79258 3.96856 4.34051 4.44137 4.75148 4.92268 5.08077 5.11651 5.15863 5.18639 5.27116 5.29965 5.41994 5.59235 5.62504 5.72241 5.80840 5.86789 5.91996 5.97972 6.00607 6.10699 6.19040 6.28164 6.70668 6.76030 6.89112 7.00434 7.06824 7.33246 7.47812 7.63791 7.84031 8.08082 8.28943 8.54904 8.70309 8.96147 9.41392 10.89432 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.004402 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.257938 B = 6359.279798 C = 6750.564220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.133 3.867 4 C -0.128 4.128 5 C -0.149 4.149 6 N -0.248 5.248 7 N -0.285 5.285 8 C -0.011 4.011 9 C -0.200 4.200 10 C -0.024 4.024 11 C 0.575 3.425 12 O -0.555 6.555 13 N -0.688 5.688 14 C 0.264 3.736 15 H 0.053 0.947 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.393 0.607 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.013 0.987 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 -12.739 -6.689 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.207 4.207 6 N -0.036 5.036 7 N -0.117 5.117 8 C -0.187 4.187 9 C -0.229 4.229 10 C -0.153 4.153 11 C 0.358 3.642 12 O -0.435 6.435 13 N -0.335 5.335 14 C 0.163 3.837 15 H 0.070 0.930 16 C -0.206 4.206 17 C -0.572 4.572 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.197 0.803 37 H 0.175 0.825 38 H 0.226 0.774 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.033 0.967 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.224 -13.910 -5.398 16.577 hybrid contribution -0.795 1.902 -0.984 2.285 sum 6.428 -12.008 -6.382 15.041 Atomic orbital electron populations 1.21764 0.95150 1.01736 1.02415 1.21895 0.96846 0.94565 1.03420 1.22272 0.96453 0.94762 0.83189 1.21803 0.93373 1.02486 0.98928 1.21773 1.01562 1.01086 0.96307 1.45846 1.37173 1.15097 1.05491 1.73039 1.22263 1.26174 0.90255 1.23450 1.02231 0.93771 0.99234 1.22234 1.06921 1.02494 0.91227 1.21855 1.04767 0.92517 0.96139 1.17011 0.79408 0.81349 0.86384 1.90669 1.59148 1.71286 1.22427 1.46325 1.47951 1.27154 1.12072 1.18854 0.91589 0.88764 0.84478 0.92956 1.22092 0.99012 0.97492 1.01968 1.21228 1.43360 0.94256 0.98370 0.91865 1.24879 0.94959 0.99063 0.94738 1.69910 1.42880 1.35095 1.04199 0.86373 0.77963 0.83867 0.78793 1.19662 1.20844 1.20850 0.92406 0.92107 0.92980 0.90639 0.89816 0.84364 0.91005 0.91349 0.92269 0.92137 0.91794 0.80253 0.82483 0.77402 0.95261 0.88911 0.96749 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.73 37.16 0.36 -1.60 16 2 C -0.13 -1.54 5.30 -26.73 -0.14 -1.69 16 3 C 0.13 1.91 2.38 -67.93 -0.16 1.74 16 4 C -0.13 -1.59 5.65 -26.73 -0.15 -1.74 16 5 C -0.15 -1.51 9.55 37.16 0.35 -1.16 16 6 N -0.25 -3.94 2.62 -50.69 -0.13 -4.08 16 7 N -0.29 -4.29 11.43 30.59 0.35 -3.94 16 8 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 9 C -0.20 -2.90 10.50 -38.98 -0.41 -3.31 16 10 C -0.02 -0.41 6.96 -82.06 -0.57 -0.98 16 11 C 0.57 11.73 7.76 -12.64 -0.10 11.63 16 12 O -0.55 -12.72 14.04 5.25 0.07 -12.65 16 13 N -0.69 -14.32 5.06 -56.09 -0.28 -14.60 16 14 C 0.26 6.59 2.60 -69.08 -0.18 6.41 16 15 H 0.05 1.50 7.51 -51.93 -0.39 1.11 16 16 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 17 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 21 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 28 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 29 H 0.08 0.83 6.52 -51.93 -0.34 0.49 16 30 H 0.14 2.31 5.40 -51.93 -0.28 2.03 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.51 6.76 -51.93 -0.35 0.16 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.16 1.91 7.59 -52.49 -0.40 1.51 16 38 H 0.39 7.14 7.57 -40.82 -0.31 6.83 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -29.56 343.59 -7.02 -36.58 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.55 Total: 8.75 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.26 Total: -6.77 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.56 Total: -46.40 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.56 -7.02 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120419463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.804 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds