Wall clock time and date at job start Fri Apr 10 2020 17:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46840 * 2 1 4 4 C 1.53005 * 109.47023 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47060 * 185.20189 * 4 3 2 6 6 H 1.09000 * 109.46933 * 54.29231 * 5 4 3 7 7 C 1.53004 * 109.47192 * 294.29693 * 5 4 3 8 8 C 1.53008 * 109.46772 * 298.12954 * 7 5 4 9 9 C 1.50697 * 109.47129 * 174.29429 * 5 4 3 10 10 O 1.21302 * 119.99819 * 359.97438 * 9 5 4 11 11 N 1.34771 * 120.00112 * 180.02562 * 9 5 4 12 12 C 1.40596 * 120.00468 * 180.02562 * 11 9 5 13 13 C 1.40647 * 126.07835 * 0.02562 * 12 11 9 14 14 N 1.30909 * 108.38856 * 180.02562 * 13 12 11 15 15 N 1.40064 * 108.40459 * 0.02562 * 14 13 12 16 16 C 1.37320 * 126.06871 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00010 * 179.97438 * 16 15 14 18 18 C 1.38986 * 120.00054 * 359.97277 * 16 15 14 19 19 N 1.31294 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00045 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47325 * 89.99758 * 20 18 16 22 22 H 1.48501 * 109.47054 * 209.99893 * 20 18 16 23 23 H 1.48498 * 109.47321 * 329.99815 * 20 18 16 24 24 C 1.35676 * 126.08610 * 179.71648 * 12 11 9 25 25 H 1.08994 * 109.47224 * 299.99625 * 1 2 3 26 26 H 1.08995 * 109.47572 * 60.00417 * 1 2 3 27 27 H 1.09005 * 109.46584 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47253 * 240.00123 * 2 1 3 29 29 H 1.08996 * 109.47748 * 120.00105 * 2 1 3 30 30 H 1.09001 * 109.47551 * 60.00282 * 3 2 1 31 31 H 1.08997 * 109.47431 * 300.00177 * 3 2 1 32 32 H 1.09003 * 109.47106 * 65.20680 * 4 3 2 33 33 H 1.08999 * 109.47499 * 305.20192 * 4 3 2 34 34 H 1.08994 * 109.46917 * 178.13430 * 7 5 4 35 35 H 1.08990 * 109.47329 * 58.12836 * 7 5 4 36 36 H 1.08998 * 109.46618 * 186.22306 * 8 7 5 37 37 H 1.09002 * 109.46927 * 66.22442 * 8 7 5 38 38 H 1.08995 * 109.46852 * 306.22615 * 8 7 5 39 39 H 0.97008 * 119.99876 * 359.97438 * 11 9 5 40 40 H 1.08010 * 125.80596 * 0.02589 * 13 12 11 41 41 H 0.97001 * 119.99973 * 180.02562 * 19 18 16 42 42 H 1.08005 * 126.24762 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8792 0.1301 6 1 3.6359 3.3436 1.0106 7 6 3.6898 3.6745 -1.1174 8 6 4.3510 3.0498 -2.3478 9 6 5.5803 2.8687 0.2704 10 8 6.1825 1.8158 0.2666 11 7 6.2530 4.0292 0.4010 12 6 7.6529 4.0196 0.5314 13 6 8.4760 2.8792 0.5412 14 7 9.7183 3.2678 0.6808 15 7 9.7375 4.6657 0.7658 16 6 10.8537 5.4512 0.9167 17 1 10.7548 6.5253 0.9710 18 6 12.1107 4.8640 0.9995 19 7 12.2309 3.5582 0.9341 20 14 13.6290 5.9325 1.2055 21 1 13.9009 6.1329 2.6517 22 1 14.7938 5.2651 0.5706 23 1 13.3994 7.2491 0.5580 24 6 8.4506 5.1090 0.6641 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9564 -0.8899 32 1 3.9329 1.0118 -0.9338 33 1 3.9337 0.8501 0.8388 34 1 4.0241 4.7063 -1.0097 35 1 2.6067 3.6541 -1.2373 36 1 4.1643 3.6781 -3.2187 37 1 3.9344 2.0573 -2.5196 38 1 5.4251 2.9692 -2.1814 39 1 5.7714 4.8713 0.4044 40 1 8.1403 1.8568 0.4493 41 1 13.1081 3.1484 0.9923 42 1 8.1262 6.1389 0.6884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139411492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:07 Heat of formation + Delta-G solvation = 13.627963 kcal Electronic energy + Delta-G solvation = -21613.161029 eV Core-core repulsion = 18401.114913 eV Total energy + Delta-G solvation = -3212.046116 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06908 -38.95479 -36.49861 -34.23653 -34.04628 -33.01649 -30.19762 -30.08471 -28.08367 -26.74434 -24.76135 -23.55709 -22.34681 -21.09516 -20.63850 -19.43208 -18.94553 -17.36962 -16.34445 -16.07721 -15.41928 -15.21429 -15.13778 -14.53351 -14.04183 -13.83598 -13.53737 -13.21788 -13.10455 -12.85635 -12.75691 -12.67591 -12.27844 -11.65919 -11.54613 -11.48293 -11.34048 -11.23950 -11.07423 -10.94948 -10.87996 -10.82872 -10.53586 -10.50423 -10.37129 -10.07128 -9.11925 -8.98865 -8.74936 -8.01400 -6.63852 -6.52460 -4.19035 2.90222 3.06439 3.09471 3.11679 3.67190 3.72925 3.91968 4.47310 4.62868 4.71233 4.81441 4.95611 4.98043 5.00902 5.05505 5.10303 5.32999 5.38049 5.48724 5.58426 5.63948 5.69521 5.72482 5.82982 5.90139 5.95744 6.02266 6.08467 6.14613 6.28416 6.30562 6.32116 6.49589 6.53239 6.95763 7.01991 7.19473 7.30458 7.90053 8.25653 8.35930 8.68977 8.96418 9.42358 9.71896 10.43684 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.047720 B = 0.003069 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.615893 B = 9121.527905 C = 9381.671628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.102 4.102 5 C -0.105 4.105 6 H 0.091 0.909 7 C -0.114 4.114 8 C -0.158 4.158 9 C 0.504 3.496 10 O -0.537 6.537 11 N -0.627 5.627 12 C -0.057 4.057 13 C -0.035 4.035 14 N -0.261 5.261 15 N -0.144 5.144 16 C -0.323 4.323 17 H 0.115 0.885 18 C 0.046 3.954 19 N -0.771 5.771 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.086 4.086 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.395 0.605 40 H 0.175 0.825 41 H 0.274 0.726 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 0.557 -2.592 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.126 4.126 6 H 0.109 0.891 7 C -0.152 4.152 8 C -0.215 4.215 9 C 0.291 3.709 10 O -0.414 6.414 11 N -0.269 5.269 12 C -0.162 4.162 13 C -0.211 4.211 14 N -0.092 5.092 15 N 0.088 4.912 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.398 5.398 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.237 4.237 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.228 0.772 40 H 0.192 0.808 41 H 0.085 0.915 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.449 -0.764 -2.496 16.655 hybrid contribution -0.451 1.342 0.075 1.417 sum -16.899 0.577 -2.422 17.082 Atomic orbital electron populations 1.21777 0.96176 1.01375 1.01611 1.21531 0.95449 0.97156 1.02219 1.21675 0.95531 0.96634 1.01857 1.21435 0.94208 0.94565 1.03748 1.21370 0.92691 0.98749 0.99804 0.89122 1.21525 1.00945 0.98792 0.93901 1.21862 1.01719 1.00754 0.97147 1.20343 0.89193 0.83680 0.77711 1.90583 1.69499 1.30994 1.50352 1.42578 1.05287 1.08234 1.70783 1.17299 0.81978 0.94193 1.22757 1.24109 0.90124 0.98814 1.08018 1.78241 1.17186 0.88411 1.25352 1.44530 1.03293 1.04451 1.38924 1.19846 0.82668 0.90466 1.52582 0.86708 1.25635 0.99698 0.96162 0.95630 1.70221 1.24883 1.09123 1.35546 0.85840 0.79783 0.79587 0.78995 1.19618 1.20109 1.18845 1.21263 0.85635 0.97009 1.19767 0.92873 0.92900 0.92992 0.92017 0.91971 0.92162 0.91907 0.90928 0.91097 0.91742 0.91004 0.92819 0.92330 0.92022 0.77232 0.80783 0.91521 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.12 -1.07 4.86 -26.73 -0.13 -1.20 16 4 C -0.10 -1.20 3.87 -26.73 -0.10 -1.30 16 5 C -0.10 -1.26 2.50 -91.77 -0.23 -1.49 16 6 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -1.15 5.41 -26.72 -0.14 -1.30 16 8 C -0.16 -1.85 9.28 37.16 0.34 -1.50 16 9 C 0.50 8.77 5.67 -10.99 -0.06 8.70 16 10 O -0.54 -11.55 13.06 5.54 0.07 -11.48 16 11 N -0.63 -11.24 5.37 -10.00 -0.05 -11.29 16 12 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 13 C -0.04 -0.95 10.85 -17.04 -0.18 -1.13 16 14 N -0.26 -7.73 10.40 30.80 0.32 -7.40 16 15 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 16 C -0.32 -8.69 10.25 -14.82 -0.15 -8.84 16 17 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 18 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 19 N -0.77 -21.88 11.81 55.49 0.66 -21.23 16 20 Si 0.93 19.17 29.55 -169.99 -5.02 14.15 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.09 -2.06 11.49 -16.39 -0.19 -2.25 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 6.80 -51.93 -0.35 0.16 16 32 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 33 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 34 H 0.06 0.61 7.62 -51.93 -0.40 0.21 16 35 H 0.07 0.59 6.62 -51.93 -0.34 0.24 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 6.68 -51.93 -0.35 0.31 16 38 H 0.06 0.93 6.94 -51.93 -0.36 0.57 16 39 H 0.39 5.54 8.28 -40.82 -0.34 5.21 16 40 H 0.18 4.67 5.92 -52.48 -0.31 4.35 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 42 H 0.14 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -33.00 340.12 -6.80 -39.80 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.54 Total: 9.49 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.31 Total: -13.09 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.88 Total: -43.99 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.00 -6.80 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139411492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.426 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds