Wall clock time and date at job start Fri Apr 10 2020 17:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 C 1.50694 * 109.46961 * 179.97438 * 3 2 1 5 5 N 1.31131 * 126.55130 * 90.25016 * 4 3 2 6 6 C 1.34496 * 105.61607 * 180.12513 * 5 4 3 7 7 C 1.50699 * 126.28949 * 179.90773 * 6 5 4 8 8 N 1.46502 * 109.46898 * 269.70963 * 7 6 5 9 9 C 1.36933 * 119.99874 * 269.99507 * 8 7 6 10 10 H 1.08001 * 119.99667 * 141.40674 * 9 8 7 11 11 C 1.38809 * 120.00349 * 321.41791 * 9 8 7 12 12 N 1.31623 * 120.00084 * 339.31423 * 11 9 8 13 13 Si 1.86802 * 120.00425 * 159.31582 * 11 9 8 14 14 H 1.48505 * 109.47033 * 59.99652 * 13 11 9 15 15 H 1.48498 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47035 * 300.00139 * 13 11 9 17 17 C 1.46497 * 119.99818 * 90.00138 * 8 7 6 18 18 C 1.55240 * 110.46472 * 239.39484 * 17 8 7 19 19 C 1.54892 * 102.58750 * 203.39759 * 18 17 8 20 20 C 1.54267 * 104.31223 * 37.93148 * 19 18 17 21 21 C 1.53877 * 106.59957 * 336.32357 * 20 19 18 22 22 N 1.29948 * 107.42447 * 359.63791 * 6 5 4 23 23 O 1.21300 * 110.24789 * 0.23092 * 22 6 5 24 24 H 1.09001 * 109.47256 * 59.99830 * 1 2 3 25 25 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 299.99920 * 1 2 3 27 27 H 1.08998 * 109.47038 * 240.00080 * 2 1 3 28 28 H 1.09002 * 109.46791 * 119.99910 * 2 1 3 29 29 H 1.08993 * 109.47222 * 59.99686 * 3 2 1 30 30 H 1.08997 * 109.46803 * 300.00129 * 3 2 1 31 31 H 1.08994 * 109.47144 * 149.70908 * 7 6 5 32 32 H 1.09000 * 109.47265 * 29.70515 * 7 6 5 33 33 H 0.96998 * 120.00128 * 180.02562 * 12 11 9 34 34 H 1.08990 * 110.43851 * 2.04265 * 17 8 7 35 35 H 1.09001 * 110.89959 * 85.10676 * 18 17 8 36 36 H 1.09005 * 110.76734 * 321.62430 * 18 17 8 37 37 H 1.09001 * 110.48471 * 279.18701 * 19 18 17 38 38 H 1.08995 * 110.48828 * 156.68023 * 19 18 17 39 39 H 1.08997 * 110.03280 * 95.61303 * 20 19 18 40 40 H 1.09007 * 110.02807 * 216.99204 * 20 19 18 41 41 H 1.09003 * 110.02544 * 119.28694 * 21 20 19 42 42 H 1.09001 * 110.02987 * 240.66673 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3283 1.4470 -1.0524 6 6 5.5843 1.4421 -0.5713 7 6 6.8517 1.4425 -1.3866 8 7 7.2629 0.0613 -1.6504 9 6 8.0968 -0.5836 -0.7764 10 1 7.9430 -1.6295 -0.5555 11 6 9.1395 0.1069 -0.1742 12 7 9.5892 1.2205 -0.7129 13 14 9.9046 -0.5441 1.4007 14 1 10.4645 -1.8976 1.1563 15 1 10.9911 0.3691 1.8375 16 1 8.8667 -0.6217 2.4599 17 6 6.7822 -0.6298 -2.8494 18 6 5.9919 -1.9077 -2.4591 19 6 6.1053 -2.7777 -3.7356 20 6 7.5392 -2.5230 -4.2445 21 6 7.9695 -1.1573 -3.6811 22 7 5.5042 1.4429 0.7257 23 8 4.3424 1.4432 1.0745 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 7.6385 1.9567 -0.8349 32 1 6.6756 1.9559 -2.3319 33 1 10.3181 1.7029 -0.2922 34 1 6.1620 0.0360 -3.4494 35 1 4.9499 -1.6702 -2.2449 36 1 6.4583 -2.4061 -1.6093 37 1 5.3745 -2.4606 -4.4795 38 1 5.9683 -3.8313 -3.4925 39 1 8.2080 -3.3038 -3.8827 40 1 7.5496 -2.4982 -5.3343 41 1 8.8473 -1.2754 -3.0457 42 1 8.1896 -0.4692 -4.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156635938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:17 Heat of formation + Delta-G solvation = 63.077260 kcal Electronic energy + Delta-G solvation = -22683.615178 eV Core-core repulsion = 19473.713344 eV Total energy + Delta-G solvation = -3209.901834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.75990 -37.72048 -35.78974 -35.25989 -33.94227 -31.65585 -30.93601 -27.84981 -27.71926 -27.29951 -26.09173 -23.41377 -22.61385 -21.77504 -20.35069 -19.82663 -19.11720 -17.35389 -16.92571 -16.11755 -15.48173 -15.30264 -14.91796 -14.64403 -14.23256 -13.54367 -13.41784 -13.24531 -12.84226 -12.57988 -12.51660 -12.04913 -11.55395 -11.50236 -11.36899 -11.29716 -10.97829 -10.85070 -10.79907 -10.68707 -10.54392 -10.40156 -10.34904 -10.28905 -10.11006 -10.00085 -9.72626 -9.48958 -9.05227 -8.50688 -6.67037 -5.88650 -3.45982 1.88215 3.08824 3.37502 3.41901 3.42672 3.48060 4.34240 4.46851 4.83661 4.88673 5.02563 5.12589 5.28859 5.31049 5.43116 5.43699 5.49223 5.52248 5.59917 5.74805 5.78770 5.98656 6.00447 6.13999 6.19528 6.23295 6.26268 6.38455 6.51621 6.55344 6.57294 6.63135 6.69329 6.84338 6.87005 7.04453 7.14178 7.33916 7.42264 7.80631 8.45442 9.06757 9.09458 9.72146 10.29631 11.13873 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.006675 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.052288 B = 4193.532038 C = 5508.742335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.018 4.018 4 C 0.142 3.858 5 N -0.480 5.480 6 C 0.176 3.824 7 C 0.223 3.777 8 N -0.559 5.559 9 C -0.258 4.258 10 H 0.061 0.939 11 C 0.023 3.977 12 N -0.884 5.884 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.280 1.280 17 C 0.174 3.826 18 C -0.133 4.133 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.131 4.131 22 N -0.378 5.378 23 O 0.059 5.941 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -1.401 -1.896 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.057 4.057 4 C -0.079 4.079 5 N -0.215 5.215 6 C -0.100 4.100 7 C 0.093 3.907 8 N -0.277 5.277 9 C -0.388 4.388 10 H 0.078 0.922 11 C -0.178 4.178 12 N -0.525 5.525 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.206 1.206 17 C 0.067 3.933 18 C -0.173 4.173 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.170 4.170 22 N -0.088 5.088 23 O 0.004 5.996 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.055 -1.260 -1.765 13.234 hybrid contribution 0.248 -0.386 0.962 1.066 sum -12.807 -1.646 -0.802 12.937 Atomic orbital electron populations 1.21742 0.94792 1.02100 1.02007 1.21530 0.96205 0.94912 1.03460 1.20081 0.81352 0.99336 1.04973 1.28631 0.98217 0.98951 0.82130 1.71877 1.01185 1.19495 1.28934 1.28075 0.96338 0.97064 0.88489 1.19556 0.86708 0.89053 0.95367 1.43732 1.51698 1.10889 1.21391 1.18807 1.05401 0.95513 1.19039 0.92151 1.25172 0.95546 0.97742 0.99373 1.69933 1.26330 1.18314 1.37919 0.86477 0.78517 0.78285 0.84207 1.20648 1.21461 1.20644 1.21352 0.92658 0.91920 0.87395 1.22914 0.99300 0.98004 0.97052 1.22265 0.96852 0.98904 0.97912 1.22065 0.96268 0.98566 0.98853 1.22483 1.01412 0.94229 0.98857 1.74690 0.95607 1.21484 1.16975 1.85267 1.12186 1.66217 1.35940 0.92394 0.92318 0.92464 0.90979 0.91305 0.88866 0.87991 0.86446 0.92418 0.93219 0.92646 0.93437 0.91260 0.92666 0.93009 0.92730 0.93253 0.89662 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 3 C -0.02 -0.20 5.84 -27.88 -0.16 -0.36 16 4 C 0.14 2.39 7.77 -13.06 -0.10 2.29 16 5 N -0.48 -9.59 11.55 -9.87 -0.11 -9.70 16 6 C 0.18 4.01 7.80 -156.37 -1.22 2.79 16 7 C 0.22 5.39 5.90 -5.19 -0.03 5.36 16 8 N -0.56 -13.72 2.44 -164.93 -0.40 -14.12 16 9 C -0.26 -6.90 7.75 -15.06 -0.12 -7.02 16 10 H 0.06 1.65 6.69 -52.49 -0.35 1.30 16 11 C 0.02 0.62 4.96 -17.43 -0.09 0.54 16 12 N -0.88 -24.81 11.50 55.49 0.64 -24.17 16 13 Si 0.90 22.00 29.60 -169.99 -5.03 16.97 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 C 0.17 3.71 3.40 -66.08 -0.22 3.49 16 18 C -0.13 -2.61 6.46 -24.55 -0.16 -2.77 16 19 C -0.12 -1.97 6.82 -25.07 -0.17 -2.14 16 20 C -0.12 -2.01 6.80 -25.61 -0.17 -2.18 16 21 C -0.13 -2.64 6.41 -25.61 -0.16 -2.80 16 22 N -0.38 -8.76 12.16 30.90 0.38 -8.39 16 23 O 0.06 1.16 11.31 18.10 0.20 1.37 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.12 3.17 5.56 -51.93 -0.29 2.88 16 32 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.06 1.16 7.84 -51.93 -0.41 0.76 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.50 6.58 -51.93 -0.34 1.15 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.08 2.00 6.94 -51.93 -0.36 1.64 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -29.74 341.33 -8.38 -38.11 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.79 Total: -0.25 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.40 Total: -4.95 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.50 Total: -56.38 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.74 -8.38 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156635938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.191 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds