Wall clock time and date at job start Fri Apr 10 2020 17:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47385 * 2 1 4 4 C 1.50695 * 109.47190 * 120.00376 * 2 1 3 5 5 N 1.31127 * 126.55440 * 119.97256 * 4 2 1 6 6 C 1.34494 * 105.61863 * 179.97438 * 5 4 2 7 7 C 1.50703 * 126.28907 * 180.26057 * 6 5 4 8 8 N 1.46496 * 109.47308 * 269.71523 * 7 6 5 9 9 C 1.36928 * 120.00045 * 90.00110 * 8 7 6 10 10 H 1.08007 * 120.00291 * 217.02699 * 9 8 7 11 11 C 1.38814 * 120.00136 * 37.02189 * 9 8 7 12 12 N 1.31617 * 119.99791 * 21.44779 * 11 9 8 13 13 Si 1.86797 * 120.00132 * 201.44513 * 11 9 8 14 14 H 1.48498 * 109.47380 * 90.00123 * 13 11 9 15 15 H 1.48506 * 109.47432 * 210.00470 * 13 11 9 16 16 H 1.48505 * 109.47407 * 329.99832 * 13 11 9 17 17 C 1.46498 * 119.99830 * 269.99765 * 8 7 6 18 18 C 1.54266 * 110.03497 * 241.33274 * 17 8 7 19 19 C 1.54964 * 104.16112 * 217.14016 * 18 17 8 20 20 C 1.54884 * 102.77904 * 37.88539 * 19 18 17 21 21 C 1.53877 * 110.03185 * 124.11574 * 17 8 7 22 22 N 1.29949 * 107.42208 * 0.02562 * 6 5 4 23 23 O 1.21301 * 110.25012 * 359.97438 * 22 6 5 24 24 H 1.08992 * 109.47616 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46871 * 299.99990 * 1 2 3 26 26 H 1.09003 * 109.47050 * 59.99084 * 1 2 3 27 27 H 1.09001 * 109.46871 * 240.00010 * 2 1 3 28 28 H 1.09000 * 109.46815 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47025 * 300.00079 * 3 2 1 30 30 H 1.09000 * 109.46652 * 59.99884 * 3 2 1 31 31 H 1.09004 * 109.46705 * 29.71932 * 7 6 5 32 32 H 1.09002 * 109.46610 * 149.71537 * 7 6 5 33 33 H 0.97005 * 119.99719 * 174.94171 * 12 11 9 34 34 H 1.08996 * 110.01998 * 2.72571 * 17 8 7 35 35 H 1.09003 * 110.48369 * 335.78688 * 18 17 8 36 36 H 1.08994 * 110.48594 * 98.43051 * 18 17 8 37 37 H 1.09000 * 110.71754 * 279.57355 * 19 18 17 38 38 H 1.09001 * 110.92423 * 156.29477 * 19 18 17 39 39 H 1.09004 * 110.48886 * 203.40781 * 20 19 18 40 40 H 1.09001 * 110.60283 * 80.81921 * 20 19 18 41 41 H 1.09004 * 110.03415 * 238.56777 * 21 17 8 42 42 H 1.09003 * 110.03403 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7888 -1.7811 1.2598 6 6 2.9816 -2.0525 2.5629 7 6 3.7930 -3.1906 3.1264 8 7 2.9299 -4.3593 3.3148 9 6 2.7796 -5.2696 2.3030 10 1 1.8207 -5.7376 2.1356 11 6 3.8596 -5.5910 1.4923 12 7 5.0872 -5.3783 1.9167 13 14 3.5708 -6.3255 -0.2007 14 1 3.4623 -5.2341 -1.2019 15 1 4.7078 -7.2121 -0.5563 16 1 2.3126 -7.1143 -0.1901 17 6 2.2277 -4.5540 4.5857 18 6 2.6849 -5.8713 5.2456 19 6 1.3963 -6.4378 5.8937 20 6 0.3049 -6.0820 4.8539 21 6 0.7151 -4.6876 4.3370 22 7 2.3440 -1.1501 3.2468 23 8 1.7921 -0.3696 2.5000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 4.5974 -3.4407 2.4346 32 1 4.2175 -2.8941 4.0855 33 1 5.8425 -5.6697 1.3822 34 1 2.4237 -3.7146 5.2527 35 1 3.0689 -6.5613 4.4942 36 1 3.4406 -5.6748 6.0060 37 1 1.1964 -5.9477 6.8466 38 1 1.4684 -7.5176 6.0240 39 1 -0.6753 -6.0397 5.3289 40 1 0.3017 -6.8053 4.0385 41 1 0.1769 -3.9135 4.8841 42 1 0.5033 -4.6071 3.2708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156684525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:22 Heat of formation + Delta-G solvation = 68.326207 kcal Electronic energy + Delta-G solvation = -22878.504294 eV Core-core repulsion = 19668.830072 eV Total energy + Delta-G solvation = -3209.674222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.75336 -37.78672 -36.02606 -35.31479 -33.83629 -31.34510 -30.53756 -27.86310 -27.42001 -27.30196 -26.12773 -23.74419 -23.27602 -21.96265 -19.90826 -19.66229 -19.08837 -17.37282 -16.79731 -16.15474 -15.64136 -15.32543 -14.71005 -14.36559 -14.15718 -13.50757 -13.32526 -13.16263 -12.97447 -12.53438 -12.33147 -12.07469 -11.67145 -11.42818 -11.27984 -11.22399 -10.98084 -10.93315 -10.78874 -10.67613 -10.42671 -10.30417 -10.27639 -10.24956 -10.06323 -9.95216 -9.86499 -9.54056 -9.09425 -8.50199 -6.65776 -5.86650 -3.39157 1.87596 3.13492 3.38927 3.40754 3.45593 3.48099 4.31556 4.47831 4.86145 4.95232 4.99550 5.23790 5.30265 5.36122 5.45767 5.48911 5.51396 5.63210 5.68006 5.74543 5.79988 5.94609 6.10570 6.13477 6.14845 6.28522 6.32055 6.42495 6.51967 6.54449 6.58748 6.64865 6.69596 6.84562 6.91266 6.98081 7.18857 7.35852 7.45892 7.84986 8.48770 9.03978 9.11375 9.75647 10.31468 11.18604 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.006819 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.090368 B = 4105.133132 C = 5132.172313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.004 3.996 3 C -0.148 4.148 4 C 0.150 3.850 5 N -0.459 5.459 6 C 0.184 3.816 7 C 0.220 3.780 8 N -0.560 5.560 9 C -0.255 4.255 10 H 0.062 0.938 11 C 0.024 3.976 12 N -0.887 5.887 13 Si 0.898 3.102 14 H -0.282 1.282 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.170 3.830 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.132 4.132 22 N -0.407 5.407 23 O 0.056 5.944 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.053 0.947 33 H 0.258 0.742 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 8.657 -0.583 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 C -0.206 4.206 4 C -0.072 4.072 5 N -0.193 5.193 6 C -0.092 4.092 7 C 0.090 3.910 8 N -0.279 5.279 9 C -0.385 4.385 10 H 0.080 0.920 11 C -0.177 4.177 12 N -0.529 5.529 13 Si 0.728 3.272 14 H -0.209 1.209 15 H -0.218 1.218 16 H -0.204 1.204 17 C 0.063 3.937 18 C -0.167 4.167 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.171 4.171 22 N -0.119 5.119 23 O 0.002 5.998 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.586 8.336 0.031 10.624 hybrid contribution -0.274 -0.303 -1.026 1.105 sum -6.859 8.033 -0.995 10.610 Atomic orbital electron populations 1.21875 0.92821 1.03069 1.02876 1.19657 0.96534 0.95412 0.89996 1.21877 1.01837 0.93903 1.02941 1.28713 0.96141 0.93557 0.88756 1.72010 1.15383 1.11350 1.20528 1.28149 0.98538 0.97393 0.85072 1.19636 0.92335 0.79815 0.99201 1.43833 1.53477 1.19958 1.10629 1.18855 0.94205 1.18737 1.06678 0.92022 1.25123 0.95033 0.98115 0.99415 1.69832 0.97619 1.48137 1.37357 0.86367 0.77240 0.78492 0.85090 1.20868 1.21802 1.20438 1.21109 0.90420 0.94997 0.87158 1.22772 0.95458 0.99309 0.99159 1.22439 0.96653 0.99487 0.97517 1.22237 0.97022 0.97823 0.98307 1.22536 0.97987 0.95378 1.01244 1.74590 1.14284 1.05588 1.17461 1.85159 1.55428 1.43757 1.15436 0.91841 0.91745 0.91021 0.87191 0.91977 0.91018 0.91722 0.85696 0.92896 0.93196 0.93212 0.89491 0.93458 0.92840 0.92718 0.93410 0.91922 0.93858 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.18 37.16 0.34 -1.21 16 2 C 0.00 0.05 3.39 -91.77 -0.31 -0.26 16 3 C -0.15 -1.44 9.18 37.16 0.34 -1.10 16 4 C 0.15 2.68 7.02 -13.06 -0.09 2.59 16 5 N -0.46 -10.21 11.55 -9.87 -0.11 -10.32 16 6 C 0.18 4.23 7.80 -156.37 -1.22 3.01 16 7 C 0.22 5.35 5.88 -5.19 -0.03 5.32 16 8 N -0.56 -13.76 2.37 -165.75 -0.39 -14.15 16 9 C -0.26 -6.78 7.75 -15.06 -0.12 -6.90 16 10 H 0.06 1.68 7.00 -52.48 -0.37 1.31 16 11 C 0.02 0.65 4.96 -17.43 -0.09 0.56 16 12 N -0.89 -24.75 11.43 55.49 0.63 -24.12 16 13 Si 0.90 21.79 29.61 -169.99 -5.03 16.75 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.17 3.67 3.41 -66.81 -0.23 3.45 16 18 C -0.13 -2.58 6.43 -25.03 -0.16 -2.74 16 19 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 20 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 21 C -0.13 -2.63 6.15 -25.61 -0.16 -2.79 16 22 N -0.41 -8.75 12.16 30.90 0.38 -8.38 16 23 O 0.06 1.06 11.31 18.11 0.20 1.26 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.13 3.38 5.48 -51.93 -0.28 3.09 16 32 H 0.05 1.22 7.96 -51.93 -0.41 0.81 16 33 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 34 H 0.05 1.06 7.85 -51.93 -0.41 0.66 16 35 H 0.09 2.03 7.17 -51.93 -0.37 1.66 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.52 6.78 -51.93 -0.35 1.17 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -29.51 341.02 -8.08 -37.58 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.83 Total: 0.73 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.06 Total: -4.51 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.50 Total: -56.97 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.51 -8.08 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156684525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.910 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds