Wall clock time and date at job start Fri Apr 10 2020 17:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47385 * 2 1 4 4 C 1.50695 * 109.47190 * 120.00376 * 2 1 3 5 5 N 1.31127 * 126.55440 * 119.97256 * 4 2 1 6 6 C 1.34494 * 105.61863 * 179.97438 * 5 4 2 7 7 C 1.50703 * 126.28907 * 180.26057 * 6 5 4 8 8 N 1.46496 * 109.47308 * 269.71523 * 7 6 5 9 9 C 1.36928 * 120.00045 * 90.00110 * 8 7 6 10 10 H 1.08007 * 120.00291 * 217.02699 * 9 8 7 11 11 C 1.38814 * 120.00136 * 37.02189 * 9 8 7 12 12 N 1.31617 * 119.99791 * 21.44779 * 11 9 8 13 13 Si 1.86797 * 120.00132 * 201.44513 * 11 9 8 14 14 H 1.48498 * 109.47380 * 90.00123 * 13 11 9 15 15 H 1.48506 * 109.47432 * 210.00470 * 13 11 9 16 16 H 1.48505 * 109.47407 * 329.99832 * 13 11 9 17 17 C 1.46498 * 119.99830 * 269.99765 * 8 7 6 18 18 C 1.54266 * 110.03497 * 241.33274 * 17 8 7 19 19 C 1.54964 * 104.16112 * 217.14016 * 18 17 8 20 20 C 1.54884 * 102.77904 * 37.88539 * 19 18 17 21 21 C 1.53877 * 110.03185 * 124.11574 * 17 8 7 22 22 N 1.29949 * 107.42208 * 0.02562 * 6 5 4 23 23 O 1.21301 * 110.25012 * 359.97438 * 22 6 5 24 24 H 1.08992 * 109.47616 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46871 * 299.99990 * 1 2 3 26 26 H 1.09003 * 109.47050 * 59.99084 * 1 2 3 27 27 H 1.09001 * 109.46871 * 240.00010 * 2 1 3 28 28 H 1.09000 * 109.46815 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47025 * 300.00079 * 3 2 1 30 30 H 1.09000 * 109.46652 * 59.99884 * 3 2 1 31 31 H 1.09004 * 109.46705 * 29.71932 * 7 6 5 32 32 H 1.09002 * 109.46610 * 149.71537 * 7 6 5 33 33 H 0.97005 * 119.99719 * 174.94171 * 12 11 9 34 34 H 1.08996 * 110.01998 * 2.72571 * 17 8 7 35 35 H 1.09003 * 110.48369 * 335.78688 * 18 17 8 36 36 H 1.08994 * 110.48594 * 98.43051 * 18 17 8 37 37 H 1.09000 * 110.71754 * 279.57355 * 19 18 17 38 38 H 1.09001 * 110.92423 * 156.29477 * 19 18 17 39 39 H 1.09004 * 110.48886 * 203.40781 * 20 19 18 40 40 H 1.09001 * 110.60283 * 80.81921 * 20 19 18 41 41 H 1.09004 * 110.03415 * 238.56777 * 21 17 8 42 42 H 1.09003 * 110.03403 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7888 -1.7811 1.2598 6 6 2.9816 -2.0525 2.5629 7 6 3.7930 -3.1906 3.1264 8 7 2.9299 -4.3593 3.3148 9 6 2.7796 -5.2696 2.3030 10 1 1.8207 -5.7376 2.1356 11 6 3.8596 -5.5910 1.4923 12 7 5.0872 -5.3783 1.9167 13 14 3.5708 -6.3255 -0.2007 14 1 3.4623 -5.2341 -1.2019 15 1 4.7078 -7.2121 -0.5563 16 1 2.3126 -7.1143 -0.1901 17 6 2.2277 -4.5540 4.5857 18 6 2.6849 -5.8713 5.2456 19 6 1.3963 -6.4378 5.8937 20 6 0.3049 -6.0820 4.8539 21 6 0.7151 -4.6876 4.3370 22 7 2.3440 -1.1501 3.2468 23 8 1.7921 -0.3696 2.5000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 4.5974 -3.4407 2.4346 32 1 4.2175 -2.8941 4.0855 33 1 5.8425 -5.6697 1.3822 34 1 2.4237 -3.7146 5.2527 35 1 3.0689 -6.5613 4.4942 36 1 3.4406 -5.6748 6.0060 37 1 1.1964 -5.9477 6.8466 38 1 1.4684 -7.5176 6.0240 39 1 -0.6753 -6.0397 5.3289 40 1 0.3017 -6.8053 4.0385 41 1 0.1769 -3.9135 4.8841 42 1 0.5033 -4.6071 3.2708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156684525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:21 Heat of formation + Delta-G solvation = 51.080961 kcal Electronic energy + Delta-G solvation = -22879.252104 eV Core-core repulsion = 19668.830072 eV Total energy + Delta-G solvation = -3210.422032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.40357 -39.48171 -37.24629 -36.89237 -35.58270 -33.21088 -32.18586 -29.43828 -29.12739 -28.09797 -28.04300 -25.12397 -25.05628 -23.59087 -21.37067 -21.13624 -20.83133 -19.03461 -18.45350 -17.97940 -17.21434 -16.75591 -16.44226 -15.99027 -15.44510 -15.25191 -14.80589 -14.71382 -14.23092 -14.11486 -13.60702 -13.19924 -13.06442 -13.05736 -12.83216 -12.66885 -12.60118 -12.49607 -12.29981 -12.07316 -12.03852 -12.00262 -11.91257 -11.79509 -11.77940 -11.70488 -11.38493 -11.27438 -10.71141 -10.54700 -8.63688 -7.91993 -5.46942 0.34301 1.39019 1.45068 1.47926 1.51656 2.02376 2.47311 2.88646 3.19672 3.39467 3.57907 3.91986 3.93486 3.96219 4.04099 4.04821 4.23321 4.47208 4.59911 4.65359 4.70969 4.78449 4.83265 4.85523 4.88282 4.90903 4.92189 4.94624 5.08468 5.12325 5.18637 5.24825 5.25143 5.31235 5.34469 5.42071 5.48030 5.53925 5.66195 5.76647 6.45378 7.08592 7.42491 7.76545 8.30151 9.11207 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.006819 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.090368 B = 4105.133132 C = 5132.172313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.001 3.999 3 C -0.142 4.142 4 C 0.172 3.828 5 N -0.505 5.505 6 C 0.167 3.833 7 C 0.226 3.774 8 N -0.571 5.571 9 C -0.250 4.250 10 H 0.051 0.949 11 C -0.019 4.019 12 N -0.912 5.912 13 Si 0.948 3.052 14 H -0.289 1.289 15 H -0.289 1.289 16 H -0.272 1.272 17 C 0.162 3.838 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.125 4.125 22 N -0.414 5.414 23 O 0.068 5.932 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.255 0.745 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 9.733 -0.662 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 C -0.199 4.199 4 C -0.049 4.049 5 N -0.238 5.238 6 C -0.108 4.108 7 C 0.096 3.904 8 N -0.290 5.290 9 C -0.380 4.380 10 H 0.069 0.931 11 C -0.217 4.217 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.216 1.216 15 H -0.215 1.215 16 H -0.197 1.197 17 C 0.056 3.944 18 C -0.164 4.164 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.164 4.164 22 N -0.125 5.125 23 O 0.012 5.988 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.657 9.402 -0.036 12.781 hybrid contribution 0.319 -0.502 -1.012 1.174 sum -8.338 8.900 -1.048 12.240 Atomic orbital electron populations 1.21893 0.90784 1.02506 1.04959 1.20118 0.98059 0.96564 0.87154 1.21889 1.01211 0.91899 1.04935 1.29799 0.93602 0.92006 0.89524 1.71963 1.17802 1.13733 1.20334 1.27736 0.99449 0.97849 0.85778 1.19289 0.92045 0.80544 0.98535 1.43933 1.53684 1.19964 1.11449 1.18852 0.93529 1.18448 1.07210 0.93124 1.25667 0.94941 0.99204 1.01874 1.69939 0.98008 1.49472 1.38163 0.85579 0.77327 0.77663 0.81740 1.21617 1.21526 1.19690 1.21318 0.91346 0.95690 0.86076 1.22656 0.97435 0.97865 0.98445 1.22396 0.93908 1.00596 0.97931 1.22211 0.98827 0.95565 0.98224 1.22426 0.96763 0.97666 0.99589 1.74532 1.14331 1.05553 1.18091 1.85120 1.54807 1.42956 1.15885 0.93705 0.91277 0.87367 0.86988 0.93004 0.87508 0.91265 0.88559 0.92741 0.93589 0.93247 0.93142 0.92983 0.90365 0.91103 0.90261 0.93223 0.92504 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.18 71.98 0.66 -1.94 16 2 C 0.00 0.03 3.39 -11.54 -0.04 -0.01 16 3 C -0.14 -2.34 9.18 71.98 0.66 -1.68 16 4 C 0.17 6.03 7.02 88.38 0.62 6.65 16 5 N -0.50 -22.85 11.55 -303.19 -3.50 -26.35 16 6 C 0.17 7.88 7.80 138.46 1.08 8.96 16 7 C 0.23 11.44 5.88 85.63 0.50 11.94 16 8 N -0.57 -28.94 2.37 -678.31 -1.61 -30.55 16 9 C -0.25 -13.72 7.75 84.04 0.65 -13.07 16 10 H 0.05 2.85 7.00 -2.91 -0.02 2.83 16 11 C -0.02 -1.05 4.96 84.86 0.42 -0.63 16 12 N -0.91 -52.77 11.43 21.65 0.25 -52.52 16 13 Si 0.95 45.76 29.61 68.60 2.03 47.80 16 14 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 17 C 0.16 7.04 3.41 45.72 0.16 7.20 16 18 C -0.12 -5.03 6.43 31.69 0.20 -4.82 16 19 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 20 C -0.11 -3.64 6.83 31.67 0.22 -3.42 16 21 C -0.13 -4.92 6.15 31.32 0.19 -4.72 16 22 N -0.41 -17.87 12.16 -60.31 -0.73 -18.60 16 23 O 0.07 2.53 11.31 74.85 0.85 3.37 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 5.48 5.48 -2.38 -0.01 5.47 16 32 H 0.05 2.64 7.96 -2.39 -0.02 2.62 16 33 H 0.25 14.30 8.32 -92.70 -0.77 13.53 16 34 H 0.05 2.12 7.85 -2.39 -0.02 2.10 16 35 H 0.05 2.40 7.17 -2.39 -0.02 2.39 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.70 6.78 -2.39 -0.02 1.69 16 Total: -1.00 -66.35 341.02 3.82 -62.53 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.99 Total: 13.10 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.55 Total: 1.22 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.59 Total: -128.02 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.85 Total: 3.37 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.80 kcal Total: -66.35 3.82 -62.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156684525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.608 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds