Wall clock time and date at job start Fri Apr 10 2020 17:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47261 * 2 1 4 4 C 1.52996 * 109.47608 * 300.44180 * 3 2 1 5 5 C 1.52998 * 109.47097 * 293.90963 * 4 3 2 6 6 C 1.52995 * 109.47281 * 60.44701 * 3 2 1 7 7 N 1.46502 * 109.47198 * 64.99480 * 6 3 2 8 8 C 1.46495 * 120.00068 * 270.00188 * 7 6 3 9 9 C 1.50709 * 109.47451 * 264.94919 * 8 7 6 10 10 H 1.08003 * 119.99438 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00181 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99956 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99900 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47198 * 89.99848 * 13 11 9 15 15 H 1.48499 * 109.47104 * 209.99783 * 13 11 9 16 16 H 1.48500 * 109.47218 * 329.99272 * 13 11 9 17 17 C 1.34775 * 120.00017 * 90.00726 * 7 6 3 18 18 O 1.21603 * 119.99901 * 3.54818 * 17 7 6 19 19 C 1.47427 * 120.00285 * 183.55741 * 17 7 6 20 20 C 1.41289 * 126.41355 * 345.07774 * 19 17 7 21 21 N 1.30443 * 108.02452 * 179.70411 * 20 19 17 22 22 N 1.39942 * 108.89737 * 0.40576 * 21 20 19 23 23 H 0.96994 * 125.75526 * 179.84381 * 22 21 20 24 24 C 1.34261 * 108.48708 * 359.58338 * 22 21 20 25 25 H 1.09004 * 109.46599 * 304.09062 * 1 2 3 26 26 H 1.08994 * 109.46872 * 64.08654 * 1 2 3 27 27 H 1.08998 * 109.47199 * 184.09588 * 1 2 3 28 28 H 1.09004 * 109.46522 * 239.99907 * 2 1 3 29 29 H 1.08998 * 109.47057 * 120.00674 * 2 1 3 30 30 H 1.09006 * 109.46716 * 180.44180 * 3 2 1 31 31 H 1.09001 * 109.46692 * 53.90708 * 4 3 2 32 32 H 1.09003 * 109.47642 * 173.90184 * 4 3 2 33 33 H 1.08999 * 109.47552 * 65.60682 * 5 4 3 34 34 H 1.09009 * 109.47075 * 185.60565 * 5 4 3 35 35 H 1.09005 * 109.47125 * 305.60007 * 5 4 3 36 36 H 1.09000 * 109.47278 * 304.99545 * 6 3 2 37 37 H 1.08998 * 109.47641 * 184.99753 * 6 3 2 38 38 H 1.08997 * 109.47668 * 24.94607 * 8 7 6 39 39 H 1.08999 * 109.47289 * 144.95191 * 8 7 6 40 40 H 0.97005 * 119.99714 * 179.97438 * 12 11 9 41 41 H 1.08004 * 125.98493 * 359.97438 * 20 19 17 42 42 H 1.08001 * 126.28629 * 180.22245 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5211 2.1670 -1.2436 5 6 2.1431 1.5428 -2.4943 6 6 1.5393 2.1604 1.2548 7 7 2.1321 1.5397 2.4420 8 6 1.4491 0.4258 3.1045 9 6 0.6131 0.9540 4.2418 10 1 0.5930 2.0135 4.4504 11 6 -0.1251 0.0847 5.0165 12 7 -0.1002 -1.2055 4.7627 13 14 -1.1618 0.7396 6.4256 14 1 -2.5239 1.0620 5.9299 15 1 -1.2540 -0.2895 7.4922 16 1 -0.5316 1.9668 6.9752 17 6 3.3058 1.9934 2.9248 18 8 3.8406 2.9589 2.4144 19 6 3.9413 1.3192 4.0715 20 6 3.3276 0.3951 4.9466 21 7 4.2159 0.0198 5.8250 22 7 5.4201 0.6830 5.5636 23 1 6.2419 0.5861 6.0696 24 6 5.2476 1.4717 4.4908 25 1 -0.3633 0.5760 0.8511 26 1 -0.3633 0.4491 -0.9243 27 1 -0.3633 -1.0250 0.0734 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.1301 1.4423 -0.0079 31 1 0.4362 2.0736 -1.2921 32 1 1.7930 3.2212 -1.1899 33 1 1.7911 0.5168 -2.6019 34 1 1.8524 2.1205 -3.3717 35 1 3.2291 1.5464 -2.4005 36 1 0.4534 2.0835 1.3085 37 1 1.8274 3.2108 1.2118 38 1 0.8060 -0.0843 2.3874 39 1 2.1886 -0.2749 3.4922 40 1 -0.6193 -1.8171 5.3080 41 1 2.3036 0.0554 4.8944 42 1 5.9938 2.1087 4.0392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171568274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:31 Heat of formation + Delta-G solvation = 18.874319 kcal Electronic energy + Delta-G solvation = -23070.479276 eV Core-core repulsion = 19858.660659 eV Total energy + Delta-G solvation = -3211.818617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24061 -40.43532 -38.30568 -36.41950 -34.39454 -32.66224 -31.96692 -31.25593 -29.98268 -28.41010 -25.66288 -25.02853 -24.23542 -22.85473 -22.45576 -20.34828 -19.79817 -18.93643 -18.43356 -17.15109 -16.98197 -16.54268 -16.17762 -16.03109 -15.62560 -15.50282 -14.97651 -14.50481 -14.28048 -14.21612 -13.86976 -13.70080 -13.58131 -13.00036 -12.79451 -12.71702 -12.57316 -12.43916 -12.21432 -12.01035 -11.87497 -11.79099 -11.67165 -11.35361 -11.18990 -11.16758 -10.75379 -10.61451 -10.39565 -9.73141 -9.24548 -8.17653 -6.31018 0.70562 1.36708 1.42373 1.45567 1.53434 2.03013 2.37135 2.50836 2.65310 3.11430 3.84668 3.98708 4.04480 4.09553 4.10077 4.36217 4.46147 4.49898 4.59488 4.65559 4.69240 4.79656 4.92792 4.94190 4.97165 5.01208 5.07221 5.13764 5.19173 5.28758 5.39140 5.42269 5.48733 5.54684 5.68997 5.72919 5.74739 5.99134 6.11883 6.42714 6.63249 6.71128 6.90035 7.35256 7.52402 8.84520 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.007679 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.481324 B = 3645.340347 C = 5168.686131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.120 3.880 7 N -0.589 5.589 8 C 0.230 3.770 9 C -0.543 4.543 10 H 0.048 0.952 11 C 0.034 3.966 12 N -0.906 5.906 13 Si 0.942 3.058 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.278 1.278 17 C 0.587 3.413 18 O -0.604 6.604 19 C -0.321 4.321 20 C 0.069 3.931 21 N -0.342 5.342 22 N -0.454 5.454 23 H 0.457 0.543 24 C 0.139 3.861 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.270 0.730 41 H 0.226 0.774 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 2.547 -7.610 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.110 4.110 4 C -0.152 4.152 5 C -0.203 4.203 6 C -0.003 4.003 7 N -0.317 5.317 8 C 0.109 3.891 9 C -0.582 4.582 10 H 0.066 0.934 11 C -0.168 4.168 12 N -0.544 5.544 13 Si 0.768 3.232 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.203 1.203 17 C 0.378 3.622 18 O -0.489 6.489 19 C -0.336 4.336 20 C -0.117 4.117 21 N -0.164 5.164 22 N -0.160 5.160 23 H 0.304 0.696 24 C -0.016 4.016 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.242 0.758 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.473 2.082 -6.780 9.602 hybrid contribution -0.473 0.578 0.684 1.013 sum 6.000 2.660 -6.096 8.957 Atomic orbital electron populations 1.21839 0.95460 1.01405 1.01874 1.21525 0.96560 0.95883 1.01275 1.21454 0.99317 0.95725 0.94464 1.21521 1.01245 0.99124 0.93332 1.21745 1.00367 1.01175 0.96981 1.21558 0.98163 0.96614 0.83968 1.47902 1.20583 1.35059 1.28171 1.19827 0.92265 0.84587 0.92402 1.21604 1.27791 0.93760 1.15038 0.93381 1.25461 0.97100 0.94932 0.99324 1.69982 1.41470 1.02501 1.40442 0.85782 0.79545 0.78154 0.79677 1.19741 1.20566 1.20286 1.17495 0.80677 0.82219 0.81844 1.90606 1.65803 1.29120 1.63394 1.20507 0.96582 1.11347 1.05137 1.26271 1.01631 0.93392 0.90387 1.77167 0.92199 1.21666 1.25347 1.46249 1.12643 1.33197 1.23943 0.69557 1.23323 0.96952 0.93244 0.88048 0.93608 0.90836 0.93370 0.90904 0.93974 0.93030 0.90664 0.92170 0.92248 0.91535 0.93412 0.90258 0.91842 0.93543 0.94611 0.92065 0.75843 0.76232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.49 71.98 0.61 -3.78 16 2 C -0.12 -3.54 4.90 30.59 0.15 -3.39 16 3 C -0.09 -2.79 2.36 -10.80 -0.03 -2.82 16 4 C -0.11 -2.78 5.19 30.59 0.16 -2.62 16 5 C -0.15 -2.97 9.55 71.98 0.69 -2.28 16 6 C 0.12 4.44 4.70 86.38 0.41 4.84 16 7 N -0.59 -25.38 2.29 -830.05 -1.90 -27.29 16 8 C 0.23 10.79 3.59 85.64 0.31 11.10 16 9 C -0.54 -27.73 7.28 25.60 0.19 -27.54 16 10 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 11 C 0.03 1.73 4.87 84.65 0.41 2.15 16 12 N -0.91 -47.89 13.29 21.44 0.28 -47.61 16 13 Si 0.94 41.78 29.54 68.60 2.03 43.81 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 C 0.59 26.01 7.62 86.66 0.66 26.67 16 18 O -0.60 -27.87 16.49 -4.04 -0.07 -27.94 16 19 C -0.32 -13.24 5.91 -20.15 -0.12 -13.36 16 20 C 0.07 3.08 9.38 85.65 0.80 3.88 16 21 N -0.34 -13.73 12.63 -56.28 -0.71 -14.44 16 22 N -0.45 -13.14 7.29 -56.32 -0.41 -13.55 16 23 H 0.46 8.58 8.96 -213.43 -1.91 6.67 16 24 C 0.14 4.29 11.86 84.28 1.00 5.29 16 25 H 0.04 1.56 5.27 -2.39 -0.01 1.55 16 26 H 0.07 1.77 6.51 -2.39 -0.02 1.76 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.94 6.75 -2.38 -0.02 1.92 16 29 H 0.04 1.54 5.95 -2.39 -0.01 1.53 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.07 1.70 6.20 -2.39 -0.01 1.68 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.16 6.88 -2.39 -0.02 1.14 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 2.91 6.03 -2.39 -0.01 2.90 16 37 H 0.06 2.42 7.37 -2.39 -0.02 2.41 16 38 H 0.05 2.22 4.72 -2.39 -0.01 2.21 16 39 H 0.04 1.81 4.67 -2.39 -0.01 1.80 16 40 H 0.27 13.65 8.31 -92.70 -0.77 12.88 16 41 H 0.23 11.31 3.01 -2.91 -0.01 11.30 16 42 H 0.22 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -62.91 325.75 3.60 -59.32 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.86 Total: 29.56 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.24 Total: -1.86 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -2.74 Total: -102.89 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.07 Total: -27.94 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -62.91 3.60 -59.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171568274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.191 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds