Wall clock time and date at job start Fri Apr 10 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47367 * 2 1 4 4 N 1.31131 * 126.55517 * 89.99651 * 3 2 1 5 5 C 1.34496 * 105.61540 * 180.02562 * 4 3 2 6 6 C 1.50692 * 126.28782 * 179.97438 * 5 4 3 7 7 N 1.46900 * 110.01915 * 58.60733 * 6 5 4 8 8 C 1.46905 * 110.99976 * 300.70568 * 7 6 5 9 9 C 1.52997 * 109.47186 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47205 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99823 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00065 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46996 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47068 * 120.00010 * 14 12 10 17 17 H 1.48496 * 109.47497 * 240.00099 * 14 12 10 18 18 C 1.54266 * 110.03282 * 297.16698 * 6 5 4 19 19 C 1.54889 * 104.19685 * 217.10524 * 18 6 5 20 20 C 1.54887 * 102.74833 * 37.94159 * 19 18 6 21 21 C 1.53873 * 110.03423 * 180.02562 * 6 5 4 22 22 N 1.29947 * 107.42238 * 359.97438 * 5 4 3 23 23 O 1.21293 * 110.25357 * 0.02562 * 22 5 4 24 24 H 1.09005 * 109.46227 * 60.00519 * 1 2 3 25 25 H 1.08995 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 300.00387 * 1 2 3 27 27 H 1.09002 * 109.47457 * 239.99451 * 2 1 3 28 28 H 1.09001 * 109.46938 * 119.99584 * 2 1 3 29 29 H 1.00899 * 111.00470 * 176.75092 * 7 6 5 30 30 H 1.09006 * 109.46733 * 299.99333 * 8 7 6 31 31 H 1.09000 * 109.47485 * 59.99033 * 8 7 6 32 32 H 1.09002 * 109.47122 * 299.99816 * 9 8 7 33 33 H 1.09000 * 109.47140 * 59.99500 * 9 8 7 34 34 H 0.96998 * 120.00278 * 179.97438 * 13 12 10 35 35 H 1.08996 * 110.48698 * 335.77978 * 18 6 5 36 36 H 1.09001 * 110.48819 * 98.42836 * 18 6 5 37 37 H 1.09000 * 110.75617 * 279.62636 * 19 18 6 38 38 H 1.09004 * 110.75821 * 156.25869 * 19 18 6 39 39 H 1.09000 * 110.48757 * 203.38187 * 20 19 18 40 40 H 1.08994 * 110.48563 * 80.73769 * 20 19 18 41 41 H 1.09003 * 110.02870 * 238.57166 * 21 6 5 42 42 H 1.08998 * 110.03144 * 359.94967 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1571 1.0534 5 6 2.7110 3.3416 0.5727 6 6 3.1326 4.5365 1.3884 7 7 4.2546 4.1761 2.2654 8 6 3.8823 3.0840 3.1748 9 6 5.0738 2.7370 4.0697 10 6 4.6916 1.6172 5.0030 11 1 3.6982 1.1955 4.9623 12 6 5.6103 1.1310 5.9090 13 7 6.8198 1.6449 5.9590 14 14 5.1364 -0.2565 7.0663 15 1 3.7284 -0.6541 6.8120 16 1 6.0294 -1.4203 6.8355 17 1 5.2744 0.2023 8.4719 18 6 1.9452 5.0470 2.2306 19 6 2.1009 6.5879 2.2118 20 6 2.5872 6.8647 0.7676 21 6 3.5402 5.6924 0.4582 22 7 2.6847 3.2663 -0.7243 23 8 2.2976 2.1712 -1.0736 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.5837 4.9790 2.7802 30 1 3.0416 3.3975 3.7938 31 1 3.5980 2.2074 2.5927 32 1 5.9142 2.4235 3.4504 33 1 5.3584 3.6135 4.6517 34 1 7.4660 1.3031 6.5965 35 1 0.9998 4.7536 1.7743 36 1 2.0109 4.6693 3.2510 37 1 2.8465 6.9097 2.9389 38 1 1.1436 7.0752 2.3972 39 1 3.1215 7.8136 0.7202 40 1 1.7455 6.8648 0.0751 41 1 4.5707 5.9866 0.6578 42 1 3.4339 5.3889 -0.5832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173689811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:51 Heat of formation + Delta-G solvation = 56.210994 kcal Electronic energy + Delta-G solvation = -22534.319796 eV Core-core repulsion = 19324.120219 eV Total energy + Delta-G solvation = -3210.199577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.38643 -39.21172 -35.70126 -34.56458 -34.26363 -32.53777 -31.08472 -29.44385 -28.70559 -26.85440 -24.86621 -23.99578 -23.51346 -22.13478 -20.90024 -20.00848 -19.16340 -17.92940 -17.26452 -16.30393 -15.69876 -15.59807 -15.10051 -14.56928 -14.41000 -14.15341 -14.00286 -13.51315 -13.08557 -12.69957 -12.59233 -12.22691 -12.08806 -11.85761 -11.40891 -11.38991 -11.22500 -11.17465 -11.13496 -11.09920 -10.90053 -10.81626 -10.64561 -10.57220 -10.41616 -9.85030 -9.66955 -9.21409 -9.06319 -8.31387 -7.82945 -5.95324 -3.96864 1.33958 2.46391 2.95077 3.33222 3.40369 3.44912 3.73133 4.09299 4.45004 4.57771 4.67506 4.75928 4.87699 4.91881 5.02533 5.14487 5.37705 5.40667 5.46584 5.53540 5.56045 5.58804 5.66132 5.73370 5.81918 5.86214 5.90377 5.96368 6.05145 6.09158 6.23969 6.27759 6.35091 6.61548 6.62965 7.20026 7.46952 7.76780 7.85265 8.01295 8.12703 8.40418 8.50498 9.10745 9.66366 11.16392 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.005751 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.246043 B = 4867.268950 C = 6410.839550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 C 0.169 3.831 4 N -0.458 5.458 5 C 0.205 3.795 6 C 0.202 3.798 7 N -0.673 5.673 8 C 0.052 3.948 9 C 0.027 3.973 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.118 4.118 22 N -0.385 5.385 23 O 0.068 5.932 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.345 0.655 30 H 0.021 0.979 31 H 0.086 0.914 32 H 0.021 0.979 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 3.677 -13.237 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.069 4.069 3 C -0.051 4.051 4 N -0.191 5.191 5 C -0.069 4.069 6 C 0.108 3.892 7 N -0.306 5.306 8 C -0.075 4.075 9 C -0.011 4.011 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.189 4.189 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.156 4.156 22 N -0.094 5.094 23 O 0.011 5.989 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.165 0.835 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.935 3.982 -13.702 18.602 hybrid contribution -0.658 -0.549 1.315 1.570 sum -12.592 3.433 -12.386 17.994 Atomic orbital electron populations 1.21772 0.92787 1.03205 1.02951 1.20172 0.96948 0.83721 1.06046 1.28940 0.96537 0.98771 0.80898 1.72042 1.16757 1.02261 1.28055 1.25505 0.98401 0.95170 0.87821 1.19711 0.91083 0.86638 0.91741 1.60782 1.31393 1.12728 1.25694 1.22545 0.98726 0.92838 0.93430 1.19061 0.92610 0.96202 0.93200 1.21205 0.98365 1.17953 1.17755 0.92640 1.25003 0.94994 0.96986 0.97485 1.69988 1.04516 1.42277 1.36684 0.86553 0.78561 0.82239 0.80755 1.19731 1.21043 1.21086 1.23097 0.98174 0.95950 1.01640 1.22487 1.01324 0.95219 0.97022 1.22357 0.98930 0.98073 0.96685 1.22289 1.00477 0.93175 0.99664 1.74506 1.19068 1.00134 1.15712 1.85242 1.60171 1.17601 1.35927 0.92145 0.90615 0.91652 0.88268 0.86967 0.83455 0.96120 0.89600 0.96061 0.97080 0.93150 0.91772 0.89645 0.90986 0.91379 0.91253 0.91822 0.89921 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 37.16 0.37 -0.79 16 2 C -0.03 -0.28 6.56 -27.88 -0.18 -0.47 16 3 C 0.17 2.40 7.77 -13.06 -0.10 2.30 16 4 N -0.46 -8.06 8.89 -9.87 -0.09 -8.15 16 5 C 0.20 3.60 6.27 -156.37 -0.98 2.62 16 6 C 0.20 3.31 0.83 -131.64 -0.11 3.20 16 7 N -0.67 -12.84 6.01 -100.00 -0.60 -13.44 16 8 C 0.05 1.16 4.90 -3.82 -0.02 1.14 16 9 C 0.03 0.72 5.23 -27.88 -0.15 0.58 16 10 C -0.51 -14.95 9.11 -34.44 -0.31 -15.26 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.15 -2.19 5.83 -25.07 -0.15 -2.33 16 19 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 20 C -0.12 -1.39 6.83 -25.10 -0.17 -1.56 16 21 C -0.12 -1.64 6.17 -25.64 -0.16 -1.80 16 22 N -0.39 -6.46 10.68 30.90 0.33 -6.13 16 23 O 0.07 1.01 11.31 18.10 0.20 1.22 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.35 6.15 8.70 -39.29 -0.34 5.81 16 30 H 0.02 0.46 6.08 -51.93 -0.32 0.14 16 31 H 0.09 2.02 5.35 -51.93 -0.28 1.74 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 36 H 0.09 1.39 5.86 -51.93 -0.30 1.09 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 42 H 0.08 1.17 6.60 -51.93 -0.34 0.82 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -33.06 336.73 -8.18 -41.24 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.59 Total: 2.40 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.23 Total: -12.46 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.38 Total: -54.43 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.06 -8.18 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173689811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.450 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds