Wall clock time and date at job start Fri Apr 10 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47367 * 2 1 4 4 N 1.31131 * 126.55517 * 89.99651 * 3 2 1 5 5 C 1.34496 * 105.61540 * 180.02562 * 4 3 2 6 6 C 1.50692 * 126.28782 * 179.97438 * 5 4 3 7 7 N 1.46900 * 110.01915 * 58.60733 * 6 5 4 8 8 C 1.46905 * 110.99976 * 300.70568 * 7 6 5 9 9 C 1.52997 * 109.47186 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47205 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99823 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00065 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46996 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47068 * 120.00010 * 14 12 10 17 17 H 1.48496 * 109.47497 * 240.00099 * 14 12 10 18 18 C 1.54266 * 110.03282 * 297.16698 * 6 5 4 19 19 C 1.54889 * 104.19685 * 217.10524 * 18 6 5 20 20 C 1.54887 * 102.74833 * 37.94159 * 19 18 6 21 21 C 1.53873 * 110.03423 * 180.02562 * 6 5 4 22 22 N 1.29947 * 107.42238 * 359.97438 * 5 4 3 23 23 O 1.21293 * 110.25357 * 0.02562 * 22 5 4 24 24 H 1.09005 * 109.46227 * 60.00519 * 1 2 3 25 25 H 1.08995 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 300.00387 * 1 2 3 27 27 H 1.09002 * 109.47457 * 239.99451 * 2 1 3 28 28 H 1.09001 * 109.46938 * 119.99584 * 2 1 3 29 29 H 1.00899 * 111.00470 * 176.75092 * 7 6 5 30 30 H 1.09006 * 109.46733 * 299.99333 * 8 7 6 31 31 H 1.09000 * 109.47485 * 59.99033 * 8 7 6 32 32 H 1.09002 * 109.47122 * 299.99816 * 9 8 7 33 33 H 1.09000 * 109.47140 * 59.99500 * 9 8 7 34 34 H 0.96998 * 120.00278 * 179.97438 * 13 12 10 35 35 H 1.08996 * 110.48698 * 335.77978 * 18 6 5 36 36 H 1.09001 * 110.48819 * 98.42836 * 18 6 5 37 37 H 1.09000 * 110.75617 * 279.62636 * 19 18 6 38 38 H 1.09004 * 110.75821 * 156.25869 * 19 18 6 39 39 H 1.09000 * 110.48757 * 203.38187 * 20 19 18 40 40 H 1.08994 * 110.48563 * 80.73769 * 20 19 18 41 41 H 1.09003 * 110.02870 * 238.57166 * 21 6 5 42 42 H 1.08998 * 110.03144 * 359.94967 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1571 1.0534 5 6 2.7110 3.3416 0.5727 6 6 3.1326 4.5365 1.3884 7 7 4.2546 4.1761 2.2654 8 6 3.8823 3.0840 3.1748 9 6 5.0738 2.7370 4.0697 10 6 4.6916 1.6172 5.0030 11 1 3.6982 1.1955 4.9623 12 6 5.6103 1.1310 5.9090 13 7 6.8198 1.6449 5.9590 14 14 5.1364 -0.2565 7.0663 15 1 3.7284 -0.6541 6.8120 16 1 6.0294 -1.4203 6.8355 17 1 5.2744 0.2023 8.4719 18 6 1.9452 5.0470 2.2306 19 6 2.1009 6.5879 2.2118 20 6 2.5872 6.8647 0.7676 21 6 3.5402 5.6924 0.4582 22 7 2.6847 3.2663 -0.7243 23 8 2.2976 2.1712 -1.0736 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.5837 4.9790 2.7802 30 1 3.0416 3.3975 3.7938 31 1 3.5980 2.2074 2.5927 32 1 5.9142 2.4235 3.4504 33 1 5.3584 3.6135 4.6517 34 1 7.4660 1.3031 6.5965 35 1 0.9998 4.7536 1.7743 36 1 2.0109 4.6693 3.2510 37 1 2.8465 6.9097 2.9389 38 1 1.1436 7.0752 2.3972 39 1 3.1215 7.8136 0.7202 40 1 1.7455 6.8648 0.0751 41 1 4.5707 5.9866 0.6578 42 1 3.4339 5.3889 -0.5832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173689811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:51 Heat of formation + Delta-G solvation = 33.767496 kcal Electronic energy + Delta-G solvation = -22535.293019 eV Core-core repulsion = 19324.120219 eV Total energy + Delta-G solvation = -3211.172801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.62406 -40.47064 -36.85743 -36.23450 -35.35451 -34.51032 -32.16778 -31.22494 -29.82471 -28.37743 -25.92722 -25.78558 -24.78620 -23.30108 -22.46505 -21.33753 -20.37418 -19.18180 -18.67780 -18.29822 -17.03595 -16.86721 -16.40475 -16.08927 -15.76915 -15.48738 -15.16324 -14.79043 -14.29207 -14.19331 -13.90821 -13.69980 -13.35330 -13.22090 -12.86895 -12.69156 -12.64662 -12.46404 -12.30205 -12.29513 -12.26523 -12.09375 -12.05780 -11.94509 -11.67262 -11.47229 -11.26405 -11.20686 -10.87962 -10.56677 -9.40489 -8.20806 -6.32059 0.16436 1.19340 1.39016 1.39777 1.53606 1.88056 2.40079 2.56546 2.92409 3.12347 3.23074 3.56006 3.61345 3.97294 4.09568 4.19866 4.22448 4.32326 4.40975 4.42519 4.46895 4.50914 4.68227 4.74257 4.80580 4.86417 4.91917 4.95681 4.97633 4.98360 5.07229 5.14194 5.21345 5.26429 5.31875 5.36005 5.46750 5.65612 5.78742 6.06890 6.23934 6.45329 6.83993 7.19241 7.36886 8.91820 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.005751 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.246043 B = 4867.268950 C = 6410.839550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C 0.181 3.819 4 N -0.500 5.500 5 C 0.185 3.815 6 C 0.196 3.804 7 N -0.680 5.680 8 C 0.077 3.923 9 C 0.036 3.964 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.276 1.276 18 C -0.144 4.144 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.115 4.115 22 N -0.395 5.395 23 O 0.073 5.927 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.046 0.954 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.351 0.649 30 H 0.020 0.980 31 H 0.077 0.923 32 H -0.014 1.014 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 3.200 -13.664 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.039 4.039 4 N -0.233 5.233 5 C -0.089 4.089 6 C 0.103 3.897 7 N -0.313 5.313 8 C -0.052 4.052 9 C -0.001 4.001 10 C -0.576 4.576 11 H 0.075 0.925 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.184 4.184 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.153 4.153 22 N -0.104 5.104 23 O 0.016 5.984 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.150 0.850 28 H 0.127 0.873 29 H 0.171 0.829 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.004 0.996 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.508 3.520 -14.141 19.871 hybrid contribution -0.162 -0.442 1.375 1.453 sum -13.670 3.078 -12.766 18.956 Atomic orbital electron populations 1.21762 0.91196 1.04772 1.02367 1.20538 0.98094 0.80887 1.07420 1.29842 0.94437 0.99759 0.79872 1.71998 1.18566 1.03005 1.29713 1.25767 0.99104 0.95711 0.88291 1.19937 0.90732 0.87328 0.91703 1.60647 1.33184 1.12377 1.25126 1.22069 0.96291 0.93851 0.92950 1.18894 0.93213 0.95008 0.93015 1.21552 0.98664 1.18801 1.18602 0.92488 1.25981 0.94743 0.99777 0.99211 1.70119 1.05717 1.43848 1.37593 0.85366 0.78764 0.78511 0.78218 1.18540 1.20209 1.20155 1.23014 0.97347 0.98186 0.99848 1.22498 1.02583 0.92799 0.97525 1.22335 0.98692 0.97746 0.96248 1.22283 1.01208 0.93259 0.98546 1.74472 1.19470 1.01018 1.15408 1.85209 1.59976 1.17292 1.35972 0.91469 0.87940 0.93483 0.85042 0.87325 0.82874 0.96205 0.90514 0.99567 0.99057 0.92744 0.91859 0.91722 0.90802 0.89288 0.88987 0.90981 0.90021 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.90 71.98 0.71 -1.22 16 2 C -0.03 -0.53 6.56 29.85 0.20 -0.33 16 3 C 0.18 5.04 7.77 88.38 0.69 5.73 16 4 N -0.50 -17.83 8.89 -303.21 -2.70 -20.52 16 5 C 0.18 6.56 6.27 138.46 0.87 7.42 16 6 C 0.20 6.46 0.83 3.50 0.00 6.47 16 7 N -0.68 -26.71 6.01 -470.29 -2.82 -29.54 16 8 C 0.08 3.56 4.90 86.30 0.42 3.98 16 9 C 0.04 2.04 5.23 29.85 0.16 2.20 16 10 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 0.03 5.46 84.65 0.46 0.50 16 13 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 14 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 15 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 C -0.14 -4.21 5.83 31.67 0.18 -4.02 16 19 C -0.12 -2.55 6.91 31.88 0.22 -2.33 16 20 C -0.11 -2.31 6.83 31.65 0.22 -2.09 16 21 C -0.11 -3.12 6.17 31.30 0.19 -2.92 16 22 N -0.39 -13.18 10.68 -60.34 -0.64 -13.83 16 23 O 0.07 2.15 11.31 74.83 0.85 2.99 16 24 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.35 12.87 8.70 -89.69 -0.78 12.09 16 30 H 0.02 0.92 6.08 -2.38 -0.01 0.90 16 31 H 0.08 3.73 5.35 -2.39 -0.01 3.72 16 32 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.06 1.84 7.85 -2.39 -0.02 1.82 16 36 H 0.06 2.15 5.86 -2.39 -0.01 2.14 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 2.21 7.90 -2.39 -0.02 2.19 16 42 H 0.07 2.09 6.60 -2.39 -0.02 2.07 16 Total: -1.00 -73.08 336.73 1.78 -71.30 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.24 Total: 18.74 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.55 Total: -18.38 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.88 Total: -121.85 kcal Atomic # 8 Polarization: 2.15 SS G_CDS: 0.85 Total: 2.99 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.08 1.78 -71.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173689811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.067 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds