Wall clock time and date at job start Fri Apr 10 2020 17:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.52992 * 109.47223 * 185.00400 * 3 2 1 7 7 H 1.09001 * 109.47066 * 299.99881 * 6 3 2 8 8 C 1.52997 * 109.47482 * 59.99712 * 6 3 2 9 9 C 1.50696 * 109.47490 * 179.97438 * 6 3 2 10 10 O 1.21294 * 119.99744 * 359.97438 * 9 6 3 11 11 N 1.34774 * 120.00492 * 179.97438 * 9 6 3 12 12 C 1.40165 * 120.00095 * 179.97438 * 11 9 6 13 13 C 1.40407 * 125.97305 * 359.71844 * 12 11 9 14 14 C 1.35238 * 107.86982 * 179.82687 * 13 12 11 15 15 N 1.34966 * 107.85580 * 0.42916 * 14 13 12 16 16 C 1.46499 * 125.97447 * 179.69184 * 15 14 13 17 17 C 1.50706 * 109.47477 * 125.01767 * 16 15 14 18 18 H 1.07998 * 119.99304 * 359.97438 * 17 16 15 19 19 C 1.37867 * 120.00264 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00270 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00084 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47002 * 89.99757 * 21 19 17 23 23 H 1.48499 * 109.46981 * 210.00069 * 21 19 17 24 24 H 1.48497 * 109.46818 * 330.00118 * 21 19 17 25 25 N 1.31211 * 125.97472 * 180.02562 * 12 11 9 26 26 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 28 28 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 29 29 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 30 30 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 33 33 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 34 34 H 1.09001 * 109.47289 * 60.00300 * 8 6 3 35 35 H 1.09004 * 109.47261 * 180.02562 * 8 6 3 36 36 H 1.09002 * 109.47153 * 300.00216 * 8 6 3 37 37 H 0.96992 * 120.00055 * 0.02562 * 11 9 6 38 38 H 1.08008 * 126.06777 * 359.97438 * 13 12 11 39 39 H 1.07997 * 126.07114 * 180.15906 * 14 13 12 40 40 H 1.08996 * 109.47477 * 245.01706 * 16 15 14 41 41 H 1.08997 * 109.47268 * 5.01968 * 16 15 14 42 42 H 0.96997 * 120.00226 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 1 3.9994 0.9054 0.7160 8 6 3.9695 0.7604 -1.4331 9 6 4.0671 2.8652 -0.1265 10 8 3.2826 3.7858 -0.0357 11 7 5.3880 3.1130 -0.2278 12 6 5.8551 4.4345 -0.2290 13 6 5.0622 5.5896 -0.1370 14 6 5.8857 6.6618 -0.1684 15 7 7.1515 6.2082 -0.2857 16 6 8.3583 7.0351 -0.3625 17 6 9.3254 6.6139 0.7139 18 1 9.0665 5.8109 1.3881 19 6 10.5399 7.2544 0.8387 20 7 10.8548 8.2326 0.0180 21 14 11.7382 6.7327 2.1734 22 1 12.6331 5.6707 1.6476 23 1 12.5512 7.9023 2.5933 24 1 10.9827 6.2104 3.3403 25 7 7.1093 4.8086 -0.3218 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9982 3.1544 1.3071 32 1 2.0699 1.5876 2.1491 33 1 0.5489 2.1253 1.3969 34 1 3.5349 1.2994 -2.2750 35 1 5.0559 0.7613 -1.5225 36 1 3.6062 -0.2673 -1.4331 37 1 6.0153 2.3768 -0.3008 38 1 3.9857 5.6169 -0.0534 39 1 5.5838 7.6973 -0.1142 40 1 8.8244 6.9079 -1.3396 41 1 8.0909 8.0822 -0.2211 42 1 11.7094 8.6830 0.1055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180633911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:01 Heat of formation + Delta-G solvation = 23.282064 kcal Electronic energy + Delta-G solvation = -21539.852607 eV Core-core repulsion = 18328.225124 eV Total energy + Delta-G solvation = -3211.627483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79464 -39.70634 -36.89010 -34.75421 -33.42048 -32.32841 -30.77968 -29.43782 -29.20021 -26.75065 -24.72339 -24.52113 -22.89607 -21.49370 -20.42375 -19.73310 -19.32386 -17.03354 -16.61463 -16.47268 -15.47621 -15.29516 -15.22801 -14.58662 -14.36517 -14.17175 -13.98130 -13.40914 -13.22101 -12.89003 -12.57119 -12.32957 -12.24457 -12.07600 -12.04330 -11.80182 -11.68428 -11.43644 -11.02271 -10.94770 -10.81490 -10.72804 -10.61211 -10.37714 -10.25885 -9.90776 -9.49967 -9.32654 -8.63817 -8.11595 -7.45562 -6.24779 -4.29905 2.36321 2.82080 2.94832 3.23384 3.29096 3.34388 3.74102 3.88528 4.31488 4.42653 4.54984 4.65197 4.88340 5.00671 5.06853 5.10357 5.25165 5.38355 5.41890 5.52086 5.56812 5.59922 5.65597 5.78258 5.81218 5.83876 5.87098 6.00537 6.05477 6.25693 6.28758 6.46619 6.50795 6.66792 6.86638 7.05101 7.44374 7.59124 7.71084 7.89103 8.04975 8.31518 8.64592 8.80047 9.35772 10.83954 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.034829 B = 0.003124 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.741895 B = 8959.603651 C = 9215.896282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.070 4.070 4 H 0.078 0.922 5 C -0.162 4.162 6 C -0.102 4.102 7 H 0.099 0.901 8 C -0.149 4.149 9 C 0.523 3.477 10 O -0.513 6.513 11 N -0.631 5.631 12 C 0.256 3.744 13 C -0.287 4.287 14 C 0.050 3.950 15 N -0.319 5.319 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.306 5.306 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 -14.599 -1.124 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.096 0.904 5 C -0.219 4.219 6 C -0.124 4.124 7 H 0.117 0.883 8 C -0.207 4.207 9 C 0.309 3.691 10 O -0.387 6.387 11 N -0.278 5.278 12 C 0.003 3.997 13 C -0.319 4.319 14 C -0.100 4.100 15 N -0.101 5.101 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.137 5.137 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.177 0.823 39 H 0.185 0.815 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.817 -14.111 -1.220 21.231 hybrid contribution 0.401 -0.237 0.732 0.868 sum -15.416 -14.348 -0.488 21.065 Atomic orbital electron populations 1.21806 0.95812 1.01308 1.02112 1.21675 0.96069 0.96208 1.02044 1.20953 0.91895 0.96039 0.99984 0.90386 1.22128 1.01070 1.03030 0.95671 1.21366 0.97915 0.92391 1.00729 0.88308 1.21886 1.01840 1.01073 0.95888 1.20657 0.80959 0.91710 0.75787 1.90571 1.54734 1.45969 1.47425 1.42576 1.08016 1.05136 1.72121 1.19157 0.92019 0.85175 1.03323 1.21520 1.01237 0.89144 1.19976 1.22565 0.85062 0.99969 1.02368 1.49077 1.07083 1.02572 1.51391 1.19741 0.78667 0.88318 0.99204 1.21253 1.00867 1.19199 1.15330 0.91326 1.24947 0.97865 0.94670 0.96616 1.69918 1.23350 1.22788 1.37320 0.86323 0.80509 0.78136 0.81506 1.20334 1.20971 1.19719 1.77323 1.15896 0.92422 1.28041 0.93008 0.92400 0.92745 0.91622 0.92003 0.89712 0.93543 0.92821 0.91823 0.91954 0.90941 0.75543 0.82300 0.81540 0.93737 0.92545 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.12 -0.88 5.19 -26.73 -0.14 -1.02 16 3 C -0.07 -0.65 1.61 -90.62 -0.15 -0.80 16 4 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 5 C -0.16 -1.69 8.63 37.16 0.32 -1.36 16 6 C -0.10 -0.97 2.32 -91.78 -0.21 -1.18 16 7 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -1.16 8.74 37.16 0.32 -0.83 16 9 C 0.52 7.24 6.83 -10.99 -0.08 7.17 16 10 O -0.51 -8.51 10.79 5.54 0.06 -8.45 16 11 N -0.63 -9.67 5.34 -11.13 -0.06 -9.73 16 12 C 0.26 5.15 8.11 -154.39 -1.25 3.90 16 13 C -0.29 -5.71 9.60 -39.83 -0.38 -6.10 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 15 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 16 C 0.26 6.60 6.26 -5.19 -0.03 6.56 16 17 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.38 13.29 55.43 0.74 -24.65 16 21 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.31 -7.07 12.42 31.44 0.39 -6.68 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.42 6.17 -51.93 -0.32 0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.12 5.51 -51.93 -0.29 0.83 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.50 6.57 -51.93 -0.34 0.16 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.46 7.57 -51.93 -0.39 0.06 16 36 H 0.07 0.43 6.32 -51.93 -0.33 0.10 16 37 H 0.41 5.18 8.24 -40.82 -0.34 4.84 16 38 H 0.16 3.05 5.92 -52.48 -0.31 2.74 16 39 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 40 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -31.53 339.66 -7.28 -38.81 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.42 Total: 3.93 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.85 Total: -7.00 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.84 Total: -48.77 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.06 Total: -8.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.53 -7.28 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180633911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.088 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds