Wall clock time and date at job start Fri Apr 10 2020 17:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47356 * 2 1 4 4 H 1.09003 * 109.47126 * 54.99280 * 3 2 1 5 5 C 1.53000 * 109.46680 * 294.99575 * 3 2 1 6 6 C 1.52996 * 109.46945 * 174.99626 * 3 2 1 7 7 H 1.09006 * 109.47056 * 60.00138 * 6 3 2 8 8 C 1.53009 * 109.46753 * 179.97438 * 6 3 2 9 9 C 1.50696 * 109.47220 * 299.99702 * 6 3 2 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 6 3 11 11 N 1.34777 * 119.99736 * 179.97438 * 9 6 3 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 6 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.09007 * 109.47354 * 300.00967 * 1 2 3 27 27 H 1.09006 * 109.46990 * 60.00347 * 1 2 3 28 28 H 1.09001 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47182 * 239.99148 * 2 1 3 30 30 H 1.09005 * 109.46649 * 119.99228 * 2 1 3 31 31 H 1.09000 * 109.47077 * 60.00590 * 5 3 2 32 32 H 1.09001 * 109.47071 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47673 * 300.00075 * 5 3 2 34 34 H 1.08996 * 109.46892 * 60.00620 * 8 6 3 35 35 H 1.09000 * 109.46691 * 180.02562 * 8 6 3 36 36 H 1.09003 * 109.47155 * 300.00250 * 8 6 3 37 37 H 0.97003 * 120.00166 * 0.02562 * 11 9 6 38 38 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 39 39 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 40 40 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 41 41 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5648 1.4442 0.1258 7 1 3.9995 0.9051 -0.7160 8 6 4.0749 2.8868 0.1252 9 6 3.9634 0.7705 1.4135 10 8 3.1117 0.3317 2.1573 11 7 5.2663 0.6547 1.7382 12 6 5.6371 0.0286 2.9362 13 6 4.7603 -0.5205 3.8854 14 6 5.5054 -1.0330 4.8909 15 7 6.8042 -0.8112 4.5983 16 6 7.9509 -1.2023 5.4218 17 6 8.8963 -2.0410 4.6008 18 1 8.6661 -2.2604 3.5688 19 6 10.0550 -2.5283 5.1673 20 7 10.3380 -2.2566 6.4226 21 14 11.2272 -3.5673 4.1495 22 1 10.8610 -5.0003 4.2824 23 1 11.1359 -3.1633 2.7235 24 1 12.6163 -3.3644 4.6335 25 7 6.8642 -0.1476 3.3662 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5491 2.1252 -1.3970 32 1 1.9991 3.1539 -1.3077 33 1 2.0700 1.5874 -2.1492 34 1 3.6404 3.4261 0.9667 35 1 5.1613 2.8880 0.2143 36 1 3.7866 3.3737 -0.8065 37 1 5.9475 1.0053 1.1432 38 1 3.6822 -0.5355 3.8215 39 1 5.1282 -1.5297 5.7727 40 1 7.6031 -1.7800 6.2782 41 1 8.4682 -0.3091 5.7720 42 1 9.7295 -1.7169 6.9511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180633928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:03 Heat of formation + Delta-G solvation = 20.559655 kcal Electronic energy + Delta-G solvation = -21657.137413 eV Core-core repulsion = 18445.391877 eV Total energy + Delta-G solvation = -3211.745536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87563 -39.78720 -36.81322 -34.84968 -33.75596 -32.53782 -30.76297 -29.38542 -28.78749 -26.46039 -25.90838 -23.70193 -22.77892 -21.40624 -20.64613 -19.83619 -19.39486 -17.20405 -17.18926 -16.52550 -15.43433 -15.36450 -15.24496 -14.68616 -14.14929 -13.82545 -13.80066 -13.59943 -13.25027 -12.94682 -12.78704 -12.49255 -12.32134 -12.16780 -11.91732 -11.87284 -11.78077 -11.56698 -11.17001 -10.88198 -10.74855 -10.69507 -10.58608 -10.37252 -10.18400 -9.96636 -9.36090 -9.00546 -8.58812 -8.20297 -7.52339 -6.59185 -4.33234 2.29654 2.74420 2.85961 3.35992 3.40090 3.56635 3.66387 3.79015 4.37912 4.39901 4.56116 4.61507 4.93983 5.09711 5.12635 5.14748 5.25969 5.29365 5.38993 5.45822 5.48544 5.56940 5.66978 5.71487 5.74866 5.85734 5.88490 5.99851 6.08800 6.18905 6.29179 6.40720 6.43963 6.52216 6.62406 6.74340 7.36402 7.48003 7.70545 7.82772 8.25579 8.33841 8.54140 8.61740 9.35116 10.78473 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.030070 B = 0.003269 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.936219 B = 8562.598080 C = 8755.110318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.070 4.070 4 H 0.078 0.922 5 C -0.151 4.151 6 C -0.103 4.103 7 H 0.099 0.901 8 C -0.149 4.149 9 C 0.522 3.478 10 O -0.512 6.512 11 N -0.631 5.631 12 C 0.258 3.742 13 C -0.285 4.285 14 C 0.050 3.950 15 N -0.318 5.318 16 C 0.249 3.751 17 C -0.608 4.608 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.906 5.906 21 Si 1.079 2.921 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.281 1.281 25 N -0.303 5.303 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 8.388 -13.424 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.089 4.089 4 H 0.096 0.904 5 C -0.208 4.208 6 C -0.124 4.124 7 H 0.117 0.883 8 C -0.206 4.206 9 C 0.309 3.691 10 O -0.386 6.386 11 N -0.279 5.279 12 C 0.005 3.995 13 C -0.316 4.316 14 C -0.100 4.100 15 N -0.099 5.099 16 C 0.131 3.869 17 C -0.646 4.646 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.541 5.541 21 Si 0.906 3.094 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.207 1.207 25 N -0.134 5.134 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.894 7.417 -12.994 20.418 hybrid contribution -1.832 0.819 -0.111 2.009 sum -15.726 8.236 -13.105 22.065 Atomic orbital electron populations 1.21757 0.96149 1.01268 1.01325 1.21857 0.95909 0.96097 1.03374 1.20956 0.91896 0.97459 0.98584 0.90387 1.21962 1.01602 1.00344 0.96874 1.21377 0.98305 0.97511 0.95217 0.88264 1.21877 1.01354 0.94187 1.03213 1.20697 0.81142 0.79207 0.88072 1.90572 1.49409 1.47235 1.51392 1.42592 1.08317 1.57408 1.19544 1.19165 0.92344 0.99114 0.88882 1.21534 1.01153 1.12810 0.96117 1.22567 0.84771 1.01806 1.00868 1.48780 1.06111 1.41006 1.14036 1.19759 0.81823 0.96055 0.89274 1.22133 1.07483 1.35000 0.99970 0.91806 1.25930 0.97425 0.97619 0.97229 1.70822 1.39087 1.36459 1.07740 0.83383 0.75732 0.75619 0.74617 1.21197 1.21237 1.20699 1.77349 1.17324 1.20153 0.98562 0.92811 0.93139 0.93112 0.92861 0.88989 0.92176 0.92419 0.92683 0.91845 0.91977 0.90898 0.75479 0.82136 0.81557 0.93646 0.94788 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.99 16 2 C -0.14 -1.40 5.14 -26.73 -0.14 -1.54 16 3 C -0.07 -0.64 1.62 -90.62 -0.15 -0.79 16 4 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 5 C -0.15 -1.05 8.60 37.16 0.32 -0.73 16 6 C -0.10 -0.96 2.32 -91.77 -0.21 -1.18 16 7 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -1.14 8.74 37.16 0.32 -0.82 16 9 C 0.52 7.18 6.80 -10.99 -0.07 7.11 16 10 O -0.51 -8.42 10.80 5.55 0.06 -8.36 16 11 N -0.63 -9.65 5.34 -11.13 -0.06 -9.71 16 12 C 0.26 5.20 8.11 -154.39 -1.25 3.94 16 13 C -0.28 -5.66 9.61 -39.83 -0.38 -6.04 16 14 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 15 N -0.32 -7.49 3.67 -62.56 -0.23 -7.71 16 16 C 0.25 6.35 5.57 -5.19 -0.03 6.32 16 17 C -0.61 -17.18 9.24 -34.44 -0.32 -17.49 16 18 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 20 N -0.91 -26.44 13.65 55.43 0.76 -25.69 16 21 Si 1.08 25.01 29.90 -169.99 -5.08 19.93 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 N -0.30 -7.07 12.42 31.44 0.39 -6.68 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.22 5.41 -51.93 -0.28 0.94 16 31 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 32 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 36 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 37 H 0.41 5.18 8.24 -40.82 -0.34 4.85 16 38 H 0.16 3.06 5.92 -52.49 -0.31 2.75 16 39 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 40 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 41 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 42 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -32.55 338.51 -7.29 -39.84 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.38 Total: 4.13 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.84 Total: -10.86 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.86 Total: -49.79 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.06 Total: -8.36 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.55 -7.29 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180633928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.396 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds