Wall clock time and date at job start Fri Apr 10 2020 17:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47221 * 2 1 4 4 H 1.08994 * 109.47105 * 179.24691 * 3 2 1 5 5 C 1.50701 * 109.47124 * 299.24506 * 3 2 1 6 6 H 1.08006 * 119.99604 * 119.99435 * 5 3 2 7 7 C 1.37872 * 120.00127 * 300.00162 * 5 3 2 8 8 N 1.31522 * 120.00006 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47185 * 90.00169 * 9 7 5 11 11 H 1.48500 * 109.47221 * 210.00031 * 9 7 5 12 12 H 1.48504 * 109.47152 * 330.00458 * 9 7 5 13 13 N 1.46904 * 109.47101 * 59.24698 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.93387 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.55105 * 14 13 3 16 16 C 1.38611 * 120.41180 * 95.00541 * 15 14 13 17 17 C 1.38571 * 118.52518 * 179.97438 * 16 15 14 18 18 N 1.32320 * 119.17400 * 359.97438 * 17 16 15 19 19 C 1.32302 * 120.75504 * 359.97438 * 18 17 16 20 20 O 1.35465 * 119.19340 * 180.02562 * 19 18 17 21 21 C 1.42900 * 116.99555 * 0.02562 * 20 19 18 22 22 C 1.52999 * 109.47563 * 89.99886 * 21 20 19 23 23 C 1.53007 * 109.47015 * 209.99984 * 21 20 19 24 24 N 1.32279 * 120.41603 * 274.71993 * 15 14 13 25 25 H 1.08995 * 109.46830 * 175.56119 * 1 2 3 26 26 H 1.08998 * 109.47032 * 55.55683 * 1 2 3 27 27 H 1.08994 * 109.46804 * 295.56023 * 1 2 3 28 28 H 1.09001 * 109.47526 * 120.00174 * 2 1 3 29 29 H 1.08999 * 109.47254 * 240.00626 * 2 1 3 30 30 H 0.96993 * 119.99868 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99507 * 209.89287 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 34 34 H 1.08005 * 120.73881 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.41530 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47490 * 329.99267 * 21 20 19 37 37 H 1.09000 * 109.47328 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.46983 * 300.00161 * 22 21 20 39 39 H 1.08997 * 109.46788 * 59.99425 * 22 21 20 40 40 H 1.09001 * 109.47168 * 59.99664 * 23 21 20 41 41 H 1.08991 * 109.47458 * 179.97438 * 23 21 20 42 42 H 1.09001 * 109.46406 * 299.99946 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5531 2.1475 -1.2397 6 1 0.9309 3.0260 -1.1521 7 6 1.9016 1.6710 -2.4856 8 7 1.4762 2.2860 -3.5676 9 14 2.9780 0.1519 -2.6371 10 1 2.1205 -1.0594 -2.6876 11 1 3.7852 0.2392 -3.8805 12 1 3.8841 0.0683 -1.4635 13 7 1.5356 2.1403 1.1903 14 6 2.4170 1.9175 2.3441 15 6 1.9296 2.7337 3.5134 16 6 1.0950 2.1681 4.4647 17 6 0.6707 2.9542 5.5241 18 7 1.0731 4.2127 5.5951 19 6 1.8710 4.7211 4.6703 20 8 2.2640 6.0133 4.7745 21 6 1.7794 6.7500 5.8990 22 6 2.7573 6.6012 7.0662 23 6 1.6535 8.2282 5.5244 24 7 2.2974 3.9972 3.6479 25 1 -0.3633 -1.0246 -0.0795 26 1 -0.3633 0.5812 -0.8475 27 1 -0.3633 0.4434 0.9271 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.7217 1.9510 -4.4441 31 1 1.4190 3.1260 1.0092 32 1 2.4076 0.8604 2.6097 33 1 3.4329 2.2190 2.0889 34 1 0.7824 1.1376 4.3820 35 1 0.0197 2.5447 6.2823 36 1 0.8026 6.3651 6.1920 37 1 2.3879 7.1635 7.9237 38 1 2.8470 5.5481 7.3330 39 1 3.7341 6.9861 6.7731 40 1 0.9568 8.3342 4.6929 41 1 1.2835 8.7901 6.3819 42 1 2.6303 8.6131 5.2314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:13 Heat of formation + Delta-G solvation = 15.390026 kcal Electronic energy + Delta-G solvation = -21706.673506 eV Core-core repulsion = 18494.703799 eV Total energy + Delta-G solvation = -3211.969707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21946 -38.82229 -36.71826 -34.19441 -33.62047 -32.31088 -31.46041 -30.56493 -27.56565 -27.40055 -25.40336 -24.06366 -23.11727 -22.88845 -21.00718 -19.39180 -18.64039 -17.62547 -16.62101 -16.10494 -15.70975 -15.51968 -14.93997 -14.69336 -14.25273 -13.94778 -13.73440 -13.58568 -13.35171 -12.99199 -12.64227 -12.54916 -12.51572 -12.17043 -12.13734 -11.78709 -11.20724 -11.16405 -11.10992 -10.91398 -10.85387 -10.58902 -10.44657 -10.22339 -10.00057 -9.35094 -9.11257 -9.00063 -8.89475 -8.57878 -7.59595 -6.09771 -4.09059 1.05567 1.10655 2.49586 3.26822 3.35946 3.38227 3.78508 3.99531 4.38200 4.44648 4.60230 4.65039 4.73370 4.98208 5.14097 5.18381 5.21311 5.29765 5.29801 5.49294 5.53990 5.55122 5.61227 5.85138 5.92782 5.93891 6.01504 6.12033 6.18211 6.24467 6.43889 6.68674 6.84548 6.86795 7.06220 7.20184 7.21130 7.46288 7.57016 7.82491 8.15248 8.24473 8.57204 8.94561 9.51707 11.03061 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.003734 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.070617 B = 7497.386483 C = 8085.500557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.005 0.995 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.101 3.899 15 C 0.231 3.769 16 C -0.250 4.250 17 C 0.180 3.820 18 N -0.577 5.577 19 C 0.501 3.499 20 O -0.285 6.285 21 C 0.086 3.914 22 C -0.168 4.168 23 C -0.151 4.151 24 N -0.520 5.520 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.346 0.654 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 3.147 21.131 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.022 0.978 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.299 5.299 14 C -0.029 4.029 15 C 0.084 3.916 16 C -0.273 4.273 17 C 0.015 3.985 18 N -0.307 5.307 19 C 0.198 3.802 20 O -0.187 6.187 21 C 0.029 3.971 22 C -0.226 4.226 23 C -0.208 4.208 24 N -0.246 5.246 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.125 3.857 21.040 21.391 hybrid contribution 0.929 -1.196 -0.361 1.557 sum 0.805 2.662 20.679 20.865 Atomic orbital electron populations 1.21470 0.95504 0.98365 1.02920 1.21764 0.97445 0.98006 0.97931 1.19632 0.93125 0.91275 0.88255 0.97767 1.20991 1.32606 1.13306 0.88341 0.90329 1.24886 0.95474 0.96803 0.95688 1.69888 1.45297 1.40433 0.97838 0.86860 0.80828 0.83693 0.76901 1.20364 1.22531 1.19327 1.60678 1.47348 1.17351 1.04486 1.21005 0.95907 0.97382 0.88599 1.21699 0.88290 0.87871 0.93780 1.22587 1.03250 1.03803 0.97635 1.22889 0.92908 0.87374 0.95308 1.67942 1.16977 1.15939 1.29830 1.20621 0.87015 0.86383 0.86186 1.86163 1.68052 1.17418 1.47097 1.22443 0.99067 0.91314 0.84286 1.22224 0.99908 1.02820 0.97601 1.21915 1.03381 0.92839 1.02673 1.67438 1.27510 1.07281 1.22421 0.96042 0.91320 0.92778 0.94989 0.93940 0.92572 0.83533 0.89333 0.93195 0.83107 0.81347 0.89014 0.90909 0.92078 0.91852 0.91535 0.90295 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.52 37.16 0.35 -2.20 16 2 C -0.11 -2.42 5.29 -26.73 -0.14 -2.56 16 3 C 0.19 4.26 1.89 -68.86 -0.13 4.13 16 4 H 0.00 0.11 6.77 -51.93 -0.35 -0.24 16 5 C -0.51 -14.04 7.87 -34.44 -0.27 -14.31 16 6 H 0.08 2.35 7.85 -52.48 -0.41 1.94 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 9 Si 0.89 21.76 24.38 -169.99 -4.14 17.62 16 10 H -0.28 -6.62 6.86 56.52 0.39 -6.24 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.67 -13.27 5.61 -109.22 -0.61 -13.88 16 14 C 0.10 1.68 5.89 -4.97 -0.03 1.65 16 15 C 0.23 3.60 6.29 -82.26 -0.52 3.09 16 16 C -0.25 -3.10 9.83 -39.32 -0.39 -3.49 16 17 C 0.18 2.04 11.30 -17.22 -0.19 1.84 16 18 N -0.58 -7.84 8.66 -14.73 -0.13 -7.97 16 19 C 0.50 7.98 8.45 -91.25 -0.77 7.20 16 20 O -0.29 -4.29 9.84 -18.09 -0.18 -4.47 16 21 C 0.09 0.93 3.10 -26.73 -0.08 0.85 16 22 C -0.17 -1.54 9.53 37.16 0.35 -1.18 16 23 C -0.15 -1.30 9.56 37.16 0.36 -0.95 16 24 N -0.52 -9.08 10.40 -10.94 -0.11 -9.19 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 1.59 7.09 -51.93 -0.37 1.22 16 27 H 0.05 1.03 7.73 -51.93 -0.40 0.63 16 28 H 0.03 0.59 7.62 -51.93 -0.40 0.20 16 29 H 0.04 0.97 3.26 -51.93 -0.17 0.80 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.35 7.41 8.13 -39.29 -0.32 7.09 16 32 H 0.09 1.30 7.54 -51.93 -0.39 0.91 16 33 H 0.05 0.87 7.94 -51.93 -0.41 0.46 16 34 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.09 1.01 6.95 -51.93 -0.36 0.65 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.20 339.64 -7.41 -38.61 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.57 Total: 4.39 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.56 Total: -3.94 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.08 Total: -57.33 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.18 Total: -4.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.20 -7.41 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.004 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds