Wall clock time and date at job start Fri Apr 10 2020 17:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47221 * 2 1 4 4 H 1.08994 * 109.47105 * 179.24691 * 3 2 1 5 5 C 1.50701 * 109.47124 * 299.24506 * 3 2 1 6 6 H 1.08006 * 119.99604 * 119.99435 * 5 3 2 7 7 C 1.37872 * 120.00127 * 300.00162 * 5 3 2 8 8 N 1.31522 * 120.00006 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47185 * 90.00169 * 9 7 5 11 11 H 1.48500 * 109.47221 * 210.00031 * 9 7 5 12 12 H 1.48504 * 109.47152 * 330.00458 * 9 7 5 13 13 N 1.46904 * 109.47101 * 59.24698 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.93387 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.55105 * 14 13 3 16 16 C 1.38611 * 120.41180 * 95.00541 * 15 14 13 17 17 C 1.38571 * 118.52518 * 179.97438 * 16 15 14 18 18 N 1.32320 * 119.17400 * 359.97438 * 17 16 15 19 19 C 1.32302 * 120.75504 * 359.97438 * 18 17 16 20 20 O 1.35465 * 119.19340 * 180.02562 * 19 18 17 21 21 C 1.42900 * 116.99555 * 0.02562 * 20 19 18 22 22 C 1.52999 * 109.47563 * 89.99886 * 21 20 19 23 23 C 1.53007 * 109.47015 * 209.99984 * 21 20 19 24 24 N 1.32279 * 120.41603 * 274.71993 * 15 14 13 25 25 H 1.08995 * 109.46830 * 175.56119 * 1 2 3 26 26 H 1.08998 * 109.47032 * 55.55683 * 1 2 3 27 27 H 1.08994 * 109.46804 * 295.56023 * 1 2 3 28 28 H 1.09001 * 109.47526 * 120.00174 * 2 1 3 29 29 H 1.08999 * 109.47254 * 240.00626 * 2 1 3 30 30 H 0.96993 * 119.99868 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99507 * 209.89287 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 34 34 H 1.08005 * 120.73881 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.41530 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47490 * 329.99267 * 21 20 19 37 37 H 1.09000 * 109.47328 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.46983 * 300.00161 * 22 21 20 39 39 H 1.08997 * 109.46788 * 59.99425 * 22 21 20 40 40 H 1.09001 * 109.47168 * 59.99664 * 23 21 20 41 41 H 1.08991 * 109.47458 * 179.97438 * 23 21 20 42 42 H 1.09001 * 109.46406 * 299.99946 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5531 2.1475 -1.2397 6 1 0.9309 3.0260 -1.1521 7 6 1.9016 1.6710 -2.4856 8 7 1.4762 2.2860 -3.5676 9 14 2.9780 0.1519 -2.6371 10 1 2.1205 -1.0594 -2.6876 11 1 3.7852 0.2392 -3.8805 12 1 3.8841 0.0683 -1.4635 13 7 1.5356 2.1403 1.1903 14 6 2.4170 1.9175 2.3441 15 6 1.9296 2.7337 3.5134 16 6 1.0950 2.1681 4.4647 17 6 0.6707 2.9542 5.5241 18 7 1.0731 4.2127 5.5951 19 6 1.8710 4.7211 4.6703 20 8 2.2640 6.0133 4.7745 21 6 1.7794 6.7500 5.8990 22 6 2.7573 6.6012 7.0662 23 6 1.6535 8.2282 5.5244 24 7 2.2974 3.9972 3.6479 25 1 -0.3633 -1.0246 -0.0795 26 1 -0.3633 0.5812 -0.8475 27 1 -0.3633 0.4434 0.9271 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.7217 1.9510 -4.4441 31 1 1.4190 3.1260 1.0092 32 1 2.4076 0.8604 2.6097 33 1 3.4329 2.2190 2.0889 34 1 0.7824 1.1376 4.3820 35 1 0.0197 2.5447 6.2823 36 1 0.8026 6.3651 6.1920 37 1 2.3879 7.1635 7.9237 38 1 2.8470 5.5481 7.3330 39 1 3.7341 6.9861 6.7731 40 1 0.9568 8.3342 4.6929 41 1 1.2835 8.7901 6.3819 42 1 2.6303 8.6131 5.2314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:13 Heat of formation + Delta-G solvation = -9.103270 kcal Electronic energy + Delta-G solvation = -21707.735615 eV Core-core repulsion = 18494.703799 eV Total energy + Delta-G solvation = -3213.031816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27154 -39.84008 -38.35145 -35.50771 -34.57801 -34.05172 -32.95772 -31.79055 -29.13415 -28.21746 -26.93533 -25.10717 -24.91915 -24.01114 -21.99093 -21.16632 -19.70104 -18.75299 -18.49815 -17.35899 -17.15560 -16.67614 -15.95467 -15.72898 -15.62725 -15.59865 -15.15876 -14.83706 -14.72136 -14.37248 -14.21646 -13.59637 -13.44031 -13.24652 -13.24203 -12.91990 -12.89060 -12.61864 -12.40526 -12.13699 -12.07358 -11.97594 -11.88219 -11.77355 -11.64566 -11.21665 -10.92990 -10.68351 -10.18591 -9.94441 -9.22363 -8.28729 -6.31981 -0.03585 0.11517 1.32042 1.36633 1.46372 1.52881 2.32603 2.69959 3.03504 3.07319 3.34989 3.64232 3.67429 3.87656 3.97209 4.12548 4.21486 4.29124 4.37432 4.51229 4.52192 4.66123 4.66369 4.75749 4.77547 4.79668 4.83814 4.89636 4.97957 5.15233 5.19368 5.21859 5.29169 5.38365 5.41720 5.65223 5.82035 5.82332 5.94973 6.21612 6.39216 6.58261 6.77194 7.09242 7.32811 8.87989 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.003734 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.070617 B = 7497.386483 C = 8085.500557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.114 4.114 3 C 0.190 3.810 4 H -0.003 1.003 5 C -0.513 4.513 6 H 0.034 0.966 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.262 1.262 11 H -0.302 1.302 12 H -0.248 1.248 13 N -0.662 5.662 14 C 0.105 3.895 15 C 0.206 3.794 16 C -0.238 4.238 17 C 0.186 3.814 18 N -0.574 5.574 19 C 0.484 3.516 20 O -0.311 6.311 21 C 0.077 3.923 22 C -0.161 4.161 23 C -0.147 4.147 24 N -0.562 5.562 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.331 0.669 32 H 0.117 0.883 33 H 0.035 0.965 34 H 0.183 0.817 35 H 0.218 0.782 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 1.055 24.202 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.081 3.919 4 H 0.014 0.986 5 C -0.551 4.551 6 H 0.052 0.948 7 C -0.181 4.181 8 N -0.588 5.588 9 Si 0.775 3.225 10 H -0.188 1.188 11 H -0.230 1.230 12 H -0.172 1.172 13 N -0.292 5.292 14 C -0.024 4.024 15 C 0.061 3.939 16 C -0.260 4.260 17 C 0.021 3.979 18 N -0.304 5.304 19 C 0.181 3.819 20 O -0.213 6.213 21 C 0.021 3.979 22 C -0.218 4.218 23 C -0.204 4.204 24 N -0.290 5.290 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.053 0.947 34 H 0.200 0.800 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.308 1.755 24.144 24.210 hybrid contribution 0.910 -0.427 -1.208 1.571 sum 0.601 1.328 22.936 22.983 Atomic orbital electron populations 1.21375 0.94952 0.99433 1.01763 1.21733 0.97936 0.96312 0.99173 1.19483 0.92438 0.92502 0.87490 0.98569 1.21239 1.31172 1.12057 0.90616 0.94767 1.25737 0.97038 1.00134 0.95236 1.70045 1.47542 1.42699 0.98515 0.85861 0.79326 0.80094 0.77209 1.18751 1.23020 1.17237 1.60644 1.48112 1.16032 1.04423 1.21049 0.94418 0.99235 0.87728 1.21634 0.90074 0.87642 0.94591 1.22907 1.01415 1.05178 0.96530 1.23747 0.92154 0.86284 0.95686 1.68061 1.16342 1.17082 1.28898 1.20761 0.87845 0.86729 0.86550 1.86134 1.68688 1.17562 1.48954 1.22777 0.99301 0.91869 0.83932 1.22182 0.99460 1.02375 0.97790 1.21951 1.03122 0.91767 1.03578 1.67286 1.29156 1.08600 1.23951 0.93318 0.95293 0.91598 0.91152 0.95034 0.92588 0.85203 0.86465 0.94712 0.79979 0.76528 0.89213 0.88133 0.93389 0.92177 0.92625 0.87278 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.52 71.98 0.69 -3.86 16 2 C -0.11 -4.53 5.29 30.60 0.16 -4.37 16 3 C 0.19 8.62 1.89 44.17 0.08 8.71 16 4 H 0.00 -0.15 6.77 -2.39 -0.02 -0.17 16 5 C -0.51 -28.93 7.87 25.60 0.20 -28.72 16 6 H 0.03 2.18 7.85 -2.91 -0.02 2.15 16 7 C 0.02 0.93 5.45 84.65 0.46 1.39 16 8 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 9 Si 0.95 44.74 24.38 68.60 1.67 46.41 16 10 H -0.26 -11.65 6.86 99.48 0.68 -10.97 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.25 -10.84 6.53 99.48 0.65 -10.19 16 13 N -0.66 -26.15 5.61 -499.45 -2.80 -28.95 16 14 C 0.11 3.35 5.89 85.56 0.50 3.85 16 15 C 0.21 6.19 6.29 42.58 0.27 6.46 16 16 C -0.24 -5.13 9.83 22.44 0.22 -4.91 16 17 C 0.19 3.56 11.30 84.70 0.96 4.52 16 18 N -0.57 -14.63 8.66 -313.48 -2.72 -17.35 16 19 C 0.48 15.41 8.45 180.57 1.53 16.94 16 20 O -0.31 -9.56 9.84 -87.64 -0.86 -10.42 16 21 C 0.08 1.63 3.10 30.60 0.09 1.73 16 22 C -0.16 -2.74 9.53 71.98 0.69 -2.06 16 23 C -0.15 -2.43 9.56 71.98 0.69 -1.74 16 24 N -0.56 -19.86 10.40 -301.48 -3.14 -23.00 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.32 7.09 -2.39 -0.02 1.30 16 27 H 0.07 2.35 7.73 -2.39 -0.02 2.33 16 28 H 0.07 2.29 7.62 -2.39 -0.02 2.27 16 29 H 0.03 1.33 3.26 -2.39 -0.01 1.33 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.33 14.74 8.13 -89.70 -0.73 14.01 16 32 H 0.12 3.01 7.54 -2.39 -0.02 3.00 16 33 H 0.03 1.21 7.94 -2.39 -0.02 1.19 16 34 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.22 1.95 8.06 -2.91 -0.02 1.92 16 36 H 0.09 1.90 6.95 -2.39 -0.02 1.88 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.96 339.64 -0.80 -72.76 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.20 Total: 21.75 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.54 Total: -2.06 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -8.35 Total: -128.44 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.86 Total: -10.42 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Total: -71.96 -0.80 -72.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.658 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds