Wall clock time and date at job start Fri Apr 10 2020 17:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47354 * 2 1 4 4 H 1.08999 * 109.47325 * 177.44969 * 3 2 1 5 5 C 1.50700 * 109.46697 * 297.45106 * 3 2 1 6 6 H 1.07995 * 120.00224 * 120.00319 * 5 3 2 7 7 C 1.37879 * 119.99666 * 299.99240 * 5 3 2 8 8 N 1.31515 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99479 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47366 * 60.00437 * 9 7 5 11 11 H 1.48506 * 109.46990 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47297 * 300.00230 * 9 7 5 13 13 N 1.46899 * 109.46706 * 57.44728 * 3 2 1 14 14 C 1.46842 * 111.00058 * 54.38127 * 13 3 2 15 15 C 1.53039 * 109.52230 * 185.83501 * 14 13 3 16 16 C 1.53110 * 109.27925 * 300.81789 * 15 14 13 17 17 C 1.53122 * 109.15994 * 57.65418 * 16 15 14 18 18 H 1.08999 * 109.50342 * 62.29157 * 17 16 15 19 19 C 1.50703 * 109.50107 * 182.40492 * 17 16 15 20 20 N 1.29940 * 126.29034 * 59.82952 * 19 17 16 21 21 O 1.21302 * 110.25627 * 179.97438 * 20 19 17 22 22 C 1.33646 * 109.80559 * 0.02562 * 21 20 19 23 23 C 1.50703 * 126.54559 * 179.97438 * 22 21 20 24 24 N 1.31126 * 106.89916 * 359.76661 * 22 21 20 25 25 C 1.46848 * 110.99491 * 178.58452 * 13 3 2 26 26 H 1.08999 * 109.46889 * 175.28339 * 1 2 3 27 27 H 1.09000 * 109.46567 * 295.27766 * 1 2 3 28 28 H 1.08993 * 109.47460 * 55.27544 * 1 2 3 29 29 H 1.09001 * 109.47625 * 119.99980 * 2 1 3 30 30 H 1.08996 * 109.47493 * 240.00106 * 2 1 3 31 31 H 0.97001 * 119.99884 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.45960 * 305.84729 * 14 13 3 33 33 H 1.08998 * 109.46584 * 65.82080 * 14 13 3 34 34 H 1.09006 * 109.50475 * 180.87558 * 15 14 13 35 35 H 1.09001 * 109.50219 * 60.75885 * 15 14 13 36 36 H 1.08997 * 109.52753 * 297.75005 * 16 15 14 37 37 H 1.09004 * 109.57808 * 177.58721 * 16 15 14 38 38 H 1.08993 * 109.47447 * 359.97438 * 23 22 21 39 39 H 1.09007 * 109.46891 * 119.97997 * 23 22 21 40 40 H 1.08996 * 109.47208 * 239.97417 * 23 22 21 41 41 H 1.08995 * 109.46963 * 294.17825 * 25 13 3 42 42 H 1.09002 * 109.46533 * 54.15965 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 0.0457 5 6 1.5899 2.1344 -1.2609 6 1 0.9658 3.0137 -1.2010 7 6 1.9752 1.6449 -2.4909 8 7 2.7351 0.5739 -2.5639 9 14 1.4179 2.5030 -4.0538 10 1 1.9133 3.9028 -4.0536 11 1 1.9626 1.7848 -5.2340 12 1 -0.0659 2.5030 -4.1164 13 7 1.5006 2.1525 1.1674 14 6 1.8071 1.4318 2.4095 15 6 1.1090 2.1192 3.5852 16 6 1.5916 3.5690 3.6822 17 6 1.3044 4.2838 2.3588 18 1 0.2291 4.3032 2.1816 19 6 1.8296 5.6948 2.4249 20 7 3.0643 6.0473 2.6244 21 8 3.1615 7.2564 2.6219 22 6 1.9613 7.8068 2.4149 23 6 1.6501 9.2794 2.3413 24 7 1.1073 6.8205 2.2835 25 6 1.9969 3.5337 1.2188 26 1 -0.3633 -1.0242 -0.0845 27 1 -0.3632 0.4388 0.9293 28 1 -0.3634 0.5853 -0.8446 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.0058 0.2294 -3.4293 32 1 1.4549 0.4034 2.3290 33 1 2.8844 1.4347 2.5749 34 1 1.3492 1.5931 4.5092 35 1 0.0306 2.1044 3.4272 36 1 2.6635 3.5838 3.8789 37 1 1.0657 4.0757 4.4914 38 1 2.5662 9.8521 2.4851 39 1 1.2251 9.5127 1.3650 40 1 0.9335 9.5387 3.1207 41 1 3.0733 3.5268 1.3896 42 1 1.7824 4.0321 0.2734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:23 Heat of formation + Delta-G solvation = 60.962164 kcal Electronic energy + Delta-G solvation = -22729.363079 eV Core-core repulsion = 19519.369528 eV Total energy + Delta-G solvation = -3209.993551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.46596 -38.76274 -36.03843 -34.85305 -33.41679 -31.85541 -30.79952 -30.06928 -28.76376 -26.49681 -24.43324 -24.01443 -23.14226 -22.23799 -21.30191 -19.32979 -18.76709 -18.01672 -17.32850 -16.08668 -15.66687 -14.90677 -14.36353 -14.30671 -14.09621 -13.80714 -13.62533 -13.31064 -13.18085 -13.02044 -12.63515 -12.12932 -12.06670 -11.83074 -11.72877 -11.46061 -11.07888 -10.92636 -10.83720 -10.77269 -10.53915 -10.48773 -10.26765 -10.10364 -9.86112 -9.73390 -9.54713 -9.29159 -8.79571 -8.37540 -7.15944 -5.98823 -4.02437 1.25876 2.37400 2.89630 3.32878 3.37203 3.40414 3.68629 4.21907 4.42122 4.81992 5.01326 5.06872 5.09746 5.16982 5.27322 5.31067 5.34831 5.53963 5.72158 5.79994 5.90371 5.94578 6.07348 6.15836 6.19197 6.25240 6.39133 6.49310 6.54873 6.62332 6.67648 6.71597 6.80908 7.13080 7.31700 7.42619 7.67284 7.76992 7.85054 8.18295 8.32862 8.35450 8.60921 9.02351 9.61412 11.07404 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.005709 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.092752 B = 4903.472123 C = 6193.304527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.219 3.781 4 H -0.003 1.003 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.525 5.525 14 C 0.047 3.953 15 C -0.112 4.112 16 C -0.107 4.107 17 C 0.002 3.998 18 H 0.106 0.894 19 C 0.191 3.809 20 N -0.380 5.380 21 O 0.072 5.928 22 C 0.164 3.836 23 C -0.058 4.058 24 N -0.480 5.480 25 C 0.078 3.922 26 H 0.016 0.984 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.025 0.975 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 11.567 11.567 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.250 5.250 14 C -0.081 4.081 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.019 4.019 18 H 0.124 0.876 19 C -0.082 4.082 20 N -0.088 5.088 21 O 0.014 5.986 22 C -0.057 4.057 23 C -0.116 4.116 24 N -0.214 5.214 25 C -0.051 4.051 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.043 0.957 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.346 10.698 11.408 15.815 hybrid contribution 0.695 0.600 -0.868 1.264 sum -1.651 11.299 10.540 15.540 Atomic orbital electron populations 1.21479 0.97212 0.97660 1.01531 1.21603 0.95185 0.98057 1.00257 1.19253 0.92396 0.90702 0.86350 0.98532 1.21013 1.30929 1.11894 0.89673 0.92120 1.24886 0.95185 0.95079 0.98883 1.69863 1.36124 1.22447 1.24722 0.86654 0.79090 0.79536 0.82703 1.20502 1.21369 1.20170 1.61991 1.59929 1.00546 1.02539 1.22145 0.96861 0.98726 0.90416 1.21564 1.01295 0.94185 0.97903 1.21584 1.01331 0.96364 0.95276 1.19774 1.01803 0.82789 0.97503 0.87594 1.25938 0.85492 0.98082 0.98735 1.74618 1.21049 0.91585 1.21534 1.85296 1.33767 1.14603 1.64965 1.28807 0.80758 0.99714 0.96390 1.20322 1.04090 0.81755 1.05443 1.71892 1.31605 0.97613 1.20304 1.21844 0.95394 0.90990 0.96883 0.96536 0.94070 0.92168 0.96672 0.88848 0.92967 0.90256 0.96228 0.91996 0.91060 0.91949 0.92394 0.88756 0.88014 0.88149 0.95668 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.41 37.16 0.35 -2.30 16 2 C -0.11 -2.68 4.95 -26.73 -0.13 -2.81 16 3 C 0.22 5.45 1.76 -68.86 -0.12 5.33 16 4 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 5 C -0.50 -13.40 6.64 -34.44 -0.23 -13.62 16 6 H 0.06 1.66 6.81 -52.49 -0.36 1.30 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -25.30 11.30 55.43 0.63 -24.67 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.53 -11.15 3.78 -228.08 -0.86 -12.01 16 14 C 0.05 0.86 4.83 -3.84 -0.02 0.84 16 15 C -0.11 -1.66 6.09 -26.65 -0.16 -1.82 16 16 C -0.11 -1.62 5.27 -26.61 -0.14 -1.76 16 17 C 0.00 0.03 2.82 -91.69 -0.26 -0.23 16 18 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 19 C 0.19 3.26 6.73 -156.37 -1.05 2.21 16 20 N -0.38 -6.50 12.16 30.90 0.38 -6.13 16 21 O 0.07 1.03 11.31 18.09 0.20 1.24 16 22 C 0.16 2.02 8.51 -13.06 -0.11 1.91 16 23 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 24 N -0.48 -7.52 11.55 -9.87 -0.11 -7.64 16 25 C 0.08 1.61 4.53 -3.83 -0.02 1.60 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.84 7.18 -51.93 -0.37 0.47 16 28 H 0.06 1.43 7.14 -51.93 -0.37 1.06 16 29 H 0.01 0.32 6.36 -51.93 -0.33 -0.01 16 30 H 0.09 2.49 6.01 -51.93 -0.31 2.17 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.08 1.45 5.59 -51.93 -0.29 1.16 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.95 6.39 -51.93 -0.33 1.62 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -30.37 329.80 -8.00 -38.38 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.57 Total: -1.53 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.61 Total: -9.06 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.03 Total: -50.45 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.20 Total: 1.24 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.37 -8.00 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.337 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds