Wall clock time and date at job start Fri Apr 10 2020 17:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47354 * 2 1 4 4 H 1.08999 * 109.47325 * 177.44969 * 3 2 1 5 5 C 1.50700 * 109.46697 * 297.45106 * 3 2 1 6 6 H 1.07995 * 120.00224 * 120.00319 * 5 3 2 7 7 C 1.37879 * 119.99666 * 299.99240 * 5 3 2 8 8 N 1.31515 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99479 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47366 * 60.00437 * 9 7 5 11 11 H 1.48506 * 109.46990 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47297 * 300.00230 * 9 7 5 13 13 N 1.46899 * 109.46706 * 57.44728 * 3 2 1 14 14 C 1.46842 * 111.00058 * 54.38127 * 13 3 2 15 15 C 1.53039 * 109.52230 * 185.83501 * 14 13 3 16 16 C 1.53110 * 109.27925 * 300.81789 * 15 14 13 17 17 C 1.53122 * 109.15994 * 57.65418 * 16 15 14 18 18 H 1.08999 * 109.50342 * 62.29157 * 17 16 15 19 19 C 1.50703 * 109.50107 * 182.40492 * 17 16 15 20 20 N 1.29940 * 126.29034 * 59.82952 * 19 17 16 21 21 O 1.21302 * 110.25627 * 179.97438 * 20 19 17 22 22 C 1.33646 * 109.80559 * 0.02562 * 21 20 19 23 23 C 1.50703 * 126.54559 * 179.97438 * 22 21 20 24 24 N 1.31126 * 106.89916 * 359.76661 * 22 21 20 25 25 C 1.46848 * 110.99491 * 178.58452 * 13 3 2 26 26 H 1.08999 * 109.46889 * 175.28339 * 1 2 3 27 27 H 1.09000 * 109.46567 * 295.27766 * 1 2 3 28 28 H 1.08993 * 109.47460 * 55.27544 * 1 2 3 29 29 H 1.09001 * 109.47625 * 119.99980 * 2 1 3 30 30 H 1.08996 * 109.47493 * 240.00106 * 2 1 3 31 31 H 0.97001 * 119.99884 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.45960 * 305.84729 * 14 13 3 33 33 H 1.08998 * 109.46584 * 65.82080 * 14 13 3 34 34 H 1.09006 * 109.50475 * 180.87558 * 15 14 13 35 35 H 1.09001 * 109.50219 * 60.75885 * 15 14 13 36 36 H 1.08997 * 109.52753 * 297.75005 * 16 15 14 37 37 H 1.09004 * 109.57808 * 177.58721 * 16 15 14 38 38 H 1.08993 * 109.47447 * 359.97438 * 23 22 21 39 39 H 1.09007 * 109.46891 * 119.97997 * 23 22 21 40 40 H 1.08996 * 109.47208 * 239.97417 * 23 22 21 41 41 H 1.08995 * 109.46963 * 294.17825 * 25 13 3 42 42 H 1.09002 * 109.46533 * 54.15965 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 0.0457 5 6 1.5899 2.1344 -1.2609 6 1 0.9658 3.0137 -1.2010 7 6 1.9752 1.6449 -2.4909 8 7 2.7351 0.5739 -2.5639 9 14 1.4179 2.5030 -4.0538 10 1 1.9133 3.9028 -4.0536 11 1 1.9626 1.7848 -5.2340 12 1 -0.0659 2.5030 -4.1164 13 7 1.5006 2.1525 1.1674 14 6 1.8071 1.4318 2.4095 15 6 1.1090 2.1192 3.5852 16 6 1.5916 3.5690 3.6822 17 6 1.3044 4.2838 2.3588 18 1 0.2291 4.3032 2.1816 19 6 1.8296 5.6948 2.4249 20 7 3.0643 6.0473 2.6244 21 8 3.1615 7.2564 2.6219 22 6 1.9613 7.8068 2.4149 23 6 1.6501 9.2794 2.3413 24 7 1.1073 6.8205 2.2835 25 6 1.9969 3.5337 1.2188 26 1 -0.3633 -1.0242 -0.0845 27 1 -0.3632 0.4388 0.9293 28 1 -0.3634 0.5853 -0.8446 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.0058 0.2294 -3.4293 32 1 1.4549 0.4034 2.3290 33 1 2.8844 1.4347 2.5749 34 1 1.3492 1.5931 4.5092 35 1 0.0306 2.1044 3.4272 36 1 2.6635 3.5838 3.8789 37 1 1.0657 4.0757 4.4914 38 1 2.5662 9.8521 2.4851 39 1 1.2251 9.5127 1.3650 40 1 0.9335 9.5387 3.1207 41 1 3.0733 3.5268 1.3896 42 1 1.7824 4.0321 0.2734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:23 Heat of formation + Delta-G solvation = 40.459112 kcal Electronic energy + Delta-G solvation = -22730.252158 eV Core-core repulsion = 19519.369528 eV Total energy + Delta-G solvation = -3210.882630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.64279 -40.33536 -37.44457 -36.32088 -34.67820 -33.66552 -32.40200 -31.55285 -29.62757 -28.44191 -25.99374 -25.65020 -24.36088 -23.91379 -22.63561 -20.90613 -20.37203 -19.19497 -18.55216 -18.11113 -17.40525 -16.26552 -16.04996 -15.67942 -15.49346 -15.39854 -14.86312 -14.54741 -14.37497 -14.17452 -14.01681 -13.79190 -13.60937 -13.27284 -12.98705 -12.85907 -12.80711 -12.59244 -12.46384 -12.32712 -12.06548 -12.04538 -11.88788 -11.73590 -11.56495 -11.38904 -11.18320 -10.79116 -10.72935 -10.46228 -8.97752 -8.10719 -6.20766 0.19705 1.17192 1.38295 1.39330 1.46880 1.98341 2.39607 2.55795 3.07367 3.16451 3.34687 3.78231 3.88365 3.91720 4.14460 4.30424 4.32218 4.55032 4.58541 4.61489 4.64955 4.66316 4.73297 4.74853 4.79808 4.86873 4.95614 4.98876 5.01548 5.10909 5.13891 5.17640 5.27867 5.35066 5.45251 5.50080 5.70690 5.77717 5.89760 6.30342 6.34773 6.72186 6.90294 7.20913 7.46450 8.94394 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.005709 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.092752 B = 4903.472123 C = 6193.304527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.107 4.107 3 C 0.224 3.776 4 H -0.049 1.049 5 C -0.505 4.505 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.523 5.523 14 C 0.043 3.957 15 C -0.101 4.101 16 C -0.100 4.100 17 C 0.011 3.989 18 H 0.105 0.895 19 C 0.174 3.826 20 N -0.406 5.406 21 O 0.073 5.927 22 C 0.182 3.818 23 C -0.058 4.058 24 N -0.510 5.510 25 C 0.089 3.911 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.261 0.739 32 H 0.083 0.917 33 H 0.008 0.992 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.003 0.997 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 13.046 12.969 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C 0.117 3.883 4 H -0.032 1.032 5 C -0.544 4.544 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.248 5.248 14 C -0.084 4.084 15 C -0.139 4.139 16 C -0.138 4.138 17 C -0.010 4.010 18 H 0.123 0.877 19 C -0.099 4.099 20 N -0.115 5.115 21 O 0.014 5.986 22 C -0.038 4.038 23 C -0.115 4.115 24 N -0.244 5.244 25 C -0.041 4.041 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.026 0.974 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.021 0.979 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.767 12.190 12.826 18.091 hybrid contribution 1.185 0.248 -1.286 1.766 sum -2.582 12.438 11.540 17.162 Atomic orbital electron populations 1.21331 0.95331 0.98739 1.01167 1.21463 0.96700 0.96806 0.99597 1.19050 0.89709 0.92019 0.87526 1.03184 1.21191 1.30628 1.11648 0.90895 0.93081 1.25586 0.95326 0.95705 1.01669 1.69995 1.36981 1.23509 1.25244 0.85749 0.78939 0.78419 0.79381 1.20443 1.20775 1.19413 1.61970 1.59199 1.00777 1.02808 1.22284 0.96778 0.99094 0.90291 1.21540 1.01206 0.93732 0.97409 1.21553 1.01111 0.96549 0.94599 1.19600 1.01043 0.83166 0.97144 0.87658 1.25898 0.85901 0.98413 0.99680 1.74597 1.21364 0.92995 1.22553 1.85252 1.34628 1.13690 1.65012 1.30000 0.79279 1.01422 0.93077 1.20769 1.06212 0.77669 1.06870 1.71883 1.32464 0.97888 1.22125 1.21654 0.94462 0.90913 0.97028 0.94303 0.92547 0.94651 0.94927 0.91867 0.93021 0.89912 0.97378 0.88754 0.90192 0.92863 0.89942 0.85899 0.86717 0.85885 0.97910 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.41 71.98 0.68 -3.97 16 2 C -0.11 -5.17 4.95 30.60 0.15 -5.02 16 3 C 0.22 11.61 1.76 44.17 0.08 11.69 16 4 H -0.05 -2.95 8.14 -2.39 -0.02 -2.97 16 5 C -0.51 -28.25 6.64 25.60 0.17 -28.08 16 6 H 0.05 2.90 6.81 -2.91 -0.02 2.88 16 7 C 0.02 0.89 5.30 84.66 0.45 1.34 16 8 N -0.92 -53.60 11.30 21.45 0.24 -53.35 16 9 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.52 -22.70 3.78 -875.51 -3.31 -26.01 16 14 C 0.04 1.56 4.83 86.33 0.42 1.98 16 15 C -0.10 -2.77 6.09 30.64 0.19 -2.58 16 16 C -0.10 -2.87 5.27 30.67 0.16 -2.71 16 17 C 0.01 0.38 2.82 -11.49 -0.03 0.35 16 18 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 19 C 0.17 5.96 6.73 138.46 0.93 6.89 16 20 N -0.41 -13.96 12.16 -60.32 -0.73 -14.70 16 21 O 0.07 2.03 11.31 74.81 0.85 2.87 16 22 C 0.18 4.16 8.51 88.38 0.75 4.91 16 23 C -0.06 -0.51 10.51 71.24 0.75 0.24 16 24 N -0.51 -15.53 11.55 -303.19 -3.50 -19.04 16 25 C 0.09 3.82 4.53 86.32 0.39 4.22 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 2.21 7.18 -2.39 -0.02 2.20 16 28 H 0.03 1.67 7.14 -2.39 -0.02 1.65 16 29 H 0.03 1.42 6.36 -2.39 -0.02 1.41 16 30 H 0.06 3.45 6.01 -2.39 -0.01 3.44 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.08 2.91 5.59 -2.39 -0.01 2.90 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.05 2.60 6.39 -2.39 -0.02 2.58 16 Total: -1.00 -69.13 329.80 1.66 -67.47 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.00 Total: 6.66 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.08 Total: -10.75 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -7.30 Total: -113.10 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -69.13 1.66 -67.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.925 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds