Wall clock time and date at job start Fri Apr 10 2020 17:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 H 1.08991 * 109.47591 * 304.42792 * 3 2 1 5 5 C 1.50698 * 109.47085 * 184.42108 * 3 2 1 6 6 H 1.08002 * 120.00599 * 244.10191 * 5 3 2 7 7 C 1.37880 * 119.99869 * 64.10022 * 5 3 2 8 8 N 1.31509 * 119.99716 * 8.59442 * 7 5 3 9 9 Si 1.86799 * 120.00047 * 188.59399 * 7 5 3 10 10 H 1.48493 * 109.47444 * 59.99747 * 9 7 5 11 11 H 1.48500 * 109.47108 * 299.99715 * 9 7 5 12 12 H 1.48502 * 109.47237 * 180.02562 * 9 7 5 13 13 N 1.46909 * 109.46873 * 64.42772 * 3 2 1 14 14 C 1.46845 * 111.00094 * 65.36529 * 13 3 2 15 15 C 1.53041 * 109.52073 * 185.84068 * 14 13 3 16 16 C 1.53120 * 109.27556 * 300.81874 * 15 14 13 17 17 C 1.53119 * 109.16091 * 57.65962 * 16 15 14 18 18 H 1.09001 * 109.50551 * 62.28064 * 17 16 15 19 19 C 1.50700 * 109.50235 * 182.40287 * 17 16 15 20 20 N 1.29945 * 126.29054 * 59.82177 * 19 17 16 21 21 O 1.21298 * 110.25614 * 179.97438 * 20 19 17 22 22 C 1.33648 * 109.80829 * 0.02562 * 21 20 19 23 23 C 1.50700 * 126.55207 * 179.97438 * 22 21 20 24 24 N 1.31132 * 106.89777 * 359.76392 * 22 21 20 25 25 C 1.46849 * 110.99488 * 189.57732 * 13 3 2 26 26 H 1.09000 * 109.46957 * 60.00051 * 1 2 3 27 27 H 1.08996 * 109.46975 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47365 * 300.00125 * 1 2 3 29 29 H 1.08999 * 109.47078 * 240.00320 * 2 1 3 30 30 H 1.09000 * 109.46957 * 119.99949 * 2 1 3 31 31 H 0.97003 * 120.00405 * 3.02007 * 8 7 5 32 32 H 1.08999 * 109.46308 * 305.85430 * 14 13 3 33 33 H 1.09000 * 109.46002 * 65.82781 * 14 13 3 34 34 H 1.08997 * 109.50188 * 180.87976 * 15 14 13 35 35 H 1.08998 * 109.50548 * 60.76103 * 15 14 13 36 36 H 1.09001 * 109.52816 * 297.74986 * 16 15 14 37 37 H 1.09004 * 109.57281 * 177.59340 * 16 15 14 38 38 H 1.09005 * 109.46755 * 359.97438 * 23 22 21 39 39 H 1.09007 * 109.47092 * 119.97070 * 23 22 21 40 40 H 1.08996 * 109.47337 * 239.97158 * 23 22 21 41 41 H 1.09001 * 109.46018 * 294.16971 * 25 13 3 42 42 H 1.09000 * 109.46656 * 54.15541 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6133 1.9788 -0.8476 5 6 3.5429 1.4440 -0.1095 6 1 4.1431 1.8313 0.7006 7 6 4.1519 0.9509 -1.2440 8 7 3.4273 0.6369 -2.2956 9 14 6.0062 0.7288 -1.2872 10 1 6.4164 -0.2181 -0.2194 11 1 6.6671 2.0402 -1.0665 12 1 6.4093 0.1884 -2.6104 13 7 1.6394 2.1034 1.2494 14 6 2.2987 1.4850 2.4067 15 6 1.7499 2.0993 3.6965 16 6 2.0058 3.6089 3.6862 17 6 1.3498 4.2214 2.4456 18 1 0.2716 4.0678 2.4907 19 6 1.6469 5.6980 2.3965 20 7 2.8246 6.2441 2.3390 21 8 2.7262 7.4528 2.3110 22 6 1.4370 7.8032 2.3496 23 6 0.8875 9.2063 2.3338 24 7 0.7415 6.6926 2.3994 25 6 1.9102 3.5456 1.1920 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4700 0.7931 -2.2892 32 1 2.1053 0.4123 2.4044 33 1 3.3729 1.6605 2.3493 34 1 2.2506 1.6512 4.5547 35 1 0.6780 1.9123 3.7613 36 1 3.0793 3.7963 3.6606 37 1 1.5789 4.0578 4.5831 38 1 1.7113 9.9186 2.2854 39 1 0.2444 9.3349 1.4631 40 1 0.3095 9.3804 3.2413 41 1 2.9863 3.7113 1.1403 42 1 1.4345 3.9696 0.3076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:29 Heat of formation + Delta-G solvation = 32.348936 kcal Electronic energy + Delta-G solvation = -22747.009232 eV Core-core repulsion = 19535.774918 eV Total energy + Delta-G solvation = -3211.234314 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.68006 -40.44813 -37.58141 -36.41837 -34.68122 -33.72273 -32.52633 -31.73819 -29.65578 -28.11378 -25.92866 -25.54724 -24.38889 -24.02954 -22.76317 -21.18873 -20.60689 -19.23086 -18.91288 -18.41719 -17.10955 -16.18322 -15.84766 -15.73549 -15.63435 -15.45082 -15.08508 -14.61700 -14.49320 -14.19212 -14.06258 -13.72824 -13.57563 -13.36572 -13.14131 -13.00614 -12.74561 -12.57181 -12.42067 -12.35446 -12.08178 -12.05037 -11.93370 -11.81442 -11.69151 -11.40386 -11.22720 -10.98940 -10.78509 -10.47470 -9.00112 -8.55871 -6.34282 0.17532 1.13282 1.45647 1.51350 1.71033 1.96511 2.50442 2.51574 3.04544 3.14681 3.26395 3.71724 3.83736 3.88668 4.12288 4.26299 4.32398 4.40389 4.47524 4.51432 4.58356 4.62554 4.64869 4.68615 4.76332 4.81251 4.84954 4.94106 4.97435 5.02171 5.08947 5.12282 5.15917 5.22808 5.33045 5.38404 5.46137 5.62610 5.89617 6.02985 6.41160 6.50352 6.57842 7.18624 7.44567 8.74272 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.005244 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.540432 B = 5337.664487 C = 6015.526833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C 0.205 3.795 4 H -0.006 1.006 5 C -0.628 4.628 6 H 0.039 0.961 7 C -0.018 4.018 8 N -0.928 5.928 9 Si 1.100 2.900 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.516 5.516 14 C 0.058 3.942 15 C -0.103 4.103 16 C -0.100 4.100 17 C 0.014 3.986 18 H 0.111 0.889 19 C 0.172 3.828 20 N -0.408 5.408 21 O 0.073 5.927 22 C 0.181 3.819 23 C -0.057 4.057 24 N -0.507 5.507 25 C 0.089 3.911 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.013 0.987 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.010 0.990 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 13.249 12.948 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C 0.098 3.902 4 H 0.011 0.989 5 C -0.667 4.667 6 H 0.058 0.942 7 C -0.218 4.218 8 N -0.565 5.565 9 Si 0.924 3.076 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.239 5.239 14 C -0.070 4.070 15 C -0.141 4.141 16 C -0.138 4.138 17 C -0.007 4.007 18 H 0.129 0.871 19 C -0.101 4.101 20 N -0.116 5.116 21 O 0.014 5.986 22 C -0.038 4.038 23 C -0.115 4.115 24 N -0.241 5.241 25 C -0.041 4.041 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.029 0.971 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.282 11.946 12.056 17.775 hybrid contribution -0.085 0.703 0.130 0.720 sum -5.367 12.649 12.186 18.366 Atomic orbital electron populations 1.21593 0.95163 1.00559 1.01264 1.21469 0.95587 0.97370 0.99833 1.19192 0.92443 0.91551 0.87034 0.98854 1.22730 0.93898 1.45428 1.04633 0.94235 1.26866 1.09841 0.93220 0.91906 1.70894 1.08437 1.46650 1.30486 0.83143 0.70904 0.77065 0.76538 1.19583 1.20923 1.20669 1.62292 1.56875 1.00970 1.03788 1.22040 0.95544 0.99014 0.90389 1.21577 1.02653 0.93391 0.96437 1.21539 0.99648 0.96778 0.95861 1.19574 1.02728 0.81896 0.96489 0.87101 1.25893 0.84129 0.99755 1.00302 1.74646 1.24167 0.90692 1.22098 1.85266 1.30801 1.16777 1.65746 1.30036 0.79685 1.00716 0.93369 1.20778 1.03136 0.80519 1.07072 1.71876 1.32069 0.98032 1.22137 1.21599 0.96952 0.89992 0.95583 0.94818 0.92723 0.91611 0.94555 0.93265 0.92870 0.91015 0.96913 0.89226 0.89855 0.93399 0.89777 0.85991 0.86539 0.85859 0.97133 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.80 71.98 0.71 -4.22 16 2 C -0.10 -4.84 5.01 30.59 0.15 -4.69 16 3 C 0.21 10.43 1.34 44.17 0.06 10.49 16 4 H -0.01 -0.37 7.35 -2.39 -0.02 -0.38 16 5 C -0.63 -35.37 7.18 25.60 0.18 -35.19 16 6 H 0.04 2.29 5.86 -2.91 -0.02 2.27 16 7 C -0.02 -1.04 5.17 84.66 0.44 -0.60 16 8 N -0.93 -56.47 12.84 21.45 0.28 -56.19 16 9 Si 1.10 51.81 29.91 68.60 2.05 53.86 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.52 -22.11 4.04 -875.48 -3.53 -25.65 16 14 C 0.06 2.24 4.79 86.33 0.41 2.66 16 15 C -0.10 -2.95 6.09 30.65 0.19 -2.77 16 16 C -0.10 -2.98 5.27 30.67 0.16 -2.82 16 17 C 0.01 0.46 2.82 -11.49 -0.03 0.43 16 18 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 19 C 0.17 5.84 6.73 138.46 0.93 6.77 16 20 N -0.41 -14.30 12.16 -60.31 -0.73 -15.03 16 21 O 0.07 2.06 11.31 74.79 0.85 2.90 16 22 C 0.18 4.06 8.51 88.38 0.75 4.81 16 23 C -0.06 -0.47 10.51 71.24 0.75 0.28 16 24 N -0.51 -14.95 11.55 -303.17 -3.50 -18.45 16 25 C 0.09 3.78 4.45 86.33 0.38 4.17 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.37 7.73 -2.39 -0.02 2.35 16 29 H 0.04 1.89 6.29 -2.39 -0.02 1.88 16 30 H 0.05 2.22 6.23 -2.39 -0.01 2.20 16 31 H 0.26 16.05 6.20 -92.71 -0.57 15.47 16 32 H 0.07 2.76 6.11 -2.39 -0.01 2.74 16 33 H 0.01 0.56 6.33 -2.39 -0.02 0.54 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.01 0.51 7.35 -2.39 -0.02 0.50 16 42 H 0.04 1.87 8.02 -2.39 -0.02 1.85 16 Total: -1.00 -71.13 329.69 1.69 -69.43 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.20 Total: 9.81 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.09 Total: -20.68 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -7.49 Total: -115.33 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.85 Total: 2.90 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Total: -71.13 1.69 -69.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.784 kcal (2) G-P(sol) polarization free energy of solvation -71.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds