Wall clock time and date at job start Fri Apr 10 2020 17:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46578 * 2 1 4 4 H 1.09002 * 109.47533 * 303.11841 * 3 2 1 5 5 C 1.50704 * 109.46774 * 183.11646 * 3 2 1 6 6 H 1.07996 * 120.00107 * 239.99766 * 5 3 2 7 7 C 1.37881 * 119.99713 * 60.00659 * 5 3 2 8 8 N 1.31507 * 120.00167 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99642 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47211 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47086 * 119.99736 * 9 7 5 12 12 H 1.48497 * 109.46989 * 239.99615 * 9 7 5 13 13 N 1.46898 * 109.47109 * 63.12344 * 3 2 1 14 14 C 1.46842 * 111.00556 * 64.91702 * 13 3 2 15 15 C 1.53035 * 109.52688 * 185.83870 * 14 13 3 16 16 C 1.53117 * 109.27871 * 300.82663 * 15 14 13 17 17 C 1.53117 * 109.16255 * 57.64975 * 16 15 14 18 18 C 1.46853 * 110.99994 * 189.13021 * 13 3 2 19 19 H 1.08993 * 109.45042 * 294.16999 * 18 13 3 20 20 C 1.50700 * 109.46096 * 54.14033 * 18 13 3 21 21 N 1.29947 * 126.29019 * 45.08102 * 20 18 13 22 22 O 1.21295 * 110.25400 * 180.02562 * 21 20 18 23 23 C 1.33644 * 109.81134 * 359.97438 * 22 21 20 24 24 C 1.50702 * 126.55046 * 180.02562 * 23 22 21 25 25 N 1.31130 * 106.89545 * 0.02562 * 23 22 21 26 26 H 1.09004 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47358 * 299.99392 * 1 2 3 28 28 H 1.08998 * 109.47812 * 60.00119 * 1 2 3 29 29 H 1.09005 * 109.47358 * 240.00607 * 2 1 3 30 30 H 1.08995 * 109.47318 * 119.99979 * 2 1 3 31 31 H 0.97001 * 120.00147 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46184 * 65.82262 * 14 13 3 33 33 H 1.09001 * 109.46494 * 305.86190 * 14 13 3 34 34 H 1.09000 * 109.50201 * 180.87877 * 15 14 13 35 35 H 1.09001 * 109.52976 * 60.78330 * 15 14 13 36 36 H 1.09009 * 109.52194 * 297.74299 * 16 15 14 37 37 H 1.09002 * 109.52038 * 177.56342 * 16 15 14 38 38 H 1.08999 * 109.49841 * 182.40731 * 17 16 15 39 39 H 1.08999 * 109.50258 * 62.29001 * 17 16 15 40 40 H 1.08991 * 109.47216 * 359.97438 * 24 23 22 41 41 H 1.08996 * 109.47057 * 119.97966 * 24 23 22 42 42 H 1.08999 * 109.47055 * 239.97404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6316 1.9723 -0.8607 5 6 3.5449 1.4433 -0.0772 6 1 4.1259 1.8965 0.7123 7 6 4.1801 0.8656 -1.1561 8 7 3.4726 0.3134 -2.1173 9 14 6.0456 0.8672 -1.2522 10 1 6.6024 1.5462 -0.0546 11 1 6.5398 -0.5323 -1.3028 12 1 6.4776 1.5892 -2.4757 13 7 1.6127 2.1129 1.2354 14 6 2.2386 1.4966 2.4121 15 6 1.6620 2.1216 3.6844 16 6 1.9279 3.6294 3.6724 17 6 1.3072 4.2392 2.4125 18 6 1.8943 3.5530 1.1771 19 1 2.9724 3.7112 1.1516 20 6 1.2715 4.1366 -0.0649 21 7 0.0716 3.9036 -0.5059 22 8 -0.1278 4.5244 -1.5287 23 6 0.9589 5.2344 -1.8467 24 6 1.1223 6.1386 -3.0413 25 7 1.8557 4.9940 -0.9207 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.9194 -0.0933 -2.8761 32 1 3.3152 1.6647 2.3807 33 1 2.0384 0.4252 2.4107 34 1 2.1381 1.6749 4.5573 35 1 0.5876 1.9418 3.7241 36 1 3.0030 3.8097 3.6728 37 1 1.4810 4.0851 4.5560 38 1 1.5300 5.3056 2.3768 39 1 0.2273 4.0929 2.4315 40 1 0.2044 6.1336 -3.6289 41 1 1.3317 7.1533 -2.7029 42 1 1.9491 5.7826 -3.6559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:37 Heat of formation + Delta-G solvation = 40.730902 kcal Electronic energy + Delta-G solvation = -23679.914917 eV Core-core repulsion = 20469.044073 eV Total energy + Delta-G solvation = -3210.870845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.46137 -40.39354 -36.80978 -36.39111 -34.52787 -33.89774 -32.31552 -31.59047 -29.55195 -28.54414 -26.10821 -25.26793 -24.24811 -24.01069 -22.06797 -21.24056 -20.44505 -19.05976 -18.56421 -18.05383 -17.30130 -16.40441 -15.94810 -15.53574 -15.38138 -15.09007 -14.73963 -14.70199 -14.41256 -14.13894 -14.01832 -13.62554 -13.34080 -13.22312 -13.11069 -12.89079 -12.82126 -12.64336 -12.43763 -12.16175 -12.10553 -11.92469 -11.81568 -11.64024 -11.57591 -11.48080 -11.07901 -11.00845 -10.59679 -10.41158 -9.00589 -8.07993 -6.30174 0.36573 1.30330 1.32943 1.36939 1.42908 2.11214 2.35225 2.71521 3.09440 3.16294 3.47734 3.90232 4.00984 4.10615 4.27823 4.37203 4.45407 4.50699 4.62690 4.65234 4.66783 4.74515 4.75657 4.84188 4.89911 4.94890 5.02542 5.09875 5.11240 5.15319 5.20299 5.26899 5.31285 5.34760 5.45482 5.49274 5.58520 5.73748 5.99889 6.13275 6.30491 6.56444 6.89382 7.38928 7.40780 8.87698 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.009137 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.363564 B = 3063.724493 C = 4063.718930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C 0.228 3.772 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.283 1.283 13 N -0.520 5.520 14 C 0.061 3.939 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.098 4.098 18 C 0.180 3.820 19 H 0.041 0.959 20 C 0.188 3.812 21 N -0.385 5.385 22 O 0.066 5.934 23 C 0.170 3.830 24 C -0.054 4.054 25 N -0.515 5.515 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.020 0.980 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 9.951 4.555 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.121 3.879 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.067 0.933 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.245 5.245 14 C -0.067 4.067 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.137 4.137 18 C 0.069 3.931 19 H 0.059 0.941 20 C -0.085 4.085 21 N -0.094 5.094 22 O 0.007 5.993 23 C -0.050 4.050 24 C -0.112 4.112 25 N -0.250 5.250 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.848 9.303 5.034 12.087 hybrid contribution 2.111 -0.250 -0.954 2.330 sum -3.737 9.054 4.081 10.611 Atomic orbital electron populations 1.21499 0.96487 0.99502 1.00195 1.21446 0.94230 0.98213 1.00468 1.18952 0.91425 0.91197 0.86320 0.98632 1.21964 0.93859 1.36961 1.05947 0.93337 1.25585 1.01892 0.94892 0.95319 1.70020 1.36280 1.38604 1.10200 0.85720 0.81546 0.77823 0.77874 1.19570 1.20254 1.20904 1.62374 1.57907 0.99985 1.04217 1.22016 0.95915 0.98797 0.89932 1.21625 1.01645 0.95380 0.96128 1.21533 1.00591 0.95679 0.96880 1.21582 1.00641 0.98727 0.92709 1.19717 0.95887 0.89705 0.87741 0.94104 1.25673 0.88071 0.95298 0.99459 1.74578 1.20223 1.15352 0.99228 1.85227 1.38929 1.43872 1.31235 1.29869 0.81421 0.94656 0.99075 1.20676 1.06634 0.95891 0.87962 1.71796 1.30117 1.17874 1.05198 0.93366 0.92558 0.96074 0.92147 0.94421 0.93027 0.96172 0.91476 0.89626 0.91243 0.92318 0.88796 0.91090 0.91443 0.85835 0.85710 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 9.78 71.98 0.70 -4.51 16 2 C -0.11 -5.27 5.10 30.59 0.16 -5.11 16 3 C 0.23 11.87 1.51 44.17 0.07 11.93 16 4 H 0.00 -0.25 6.32 -2.39 -0.02 -0.27 16 5 C -0.55 -30.61 7.22 25.60 0.18 -30.42 16 6 H 0.05 2.73 5.84 -2.91 -0.02 2.72 16 7 C 0.02 1.29 5.30 84.66 0.45 1.74 16 8 N -0.91 -53.63 11.30 21.45 0.24 -53.39 16 9 Si 0.94 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.52 -22.79 3.81 -854.78 -3.25 -26.04 16 14 C 0.06 2.37 4.79 86.33 0.41 2.78 16 15 C -0.11 -3.15 6.09 30.65 0.19 -2.97 16 16 C -0.11 -2.91 6.00 30.67 0.18 -2.73 16 17 C -0.10 -3.15 5.36 30.64 0.16 -2.99 16 18 C 0.18 7.53 2.10 44.19 0.09 7.62 16 19 H 0.04 1.92 7.23 -2.39 -0.02 1.91 16 20 C 0.19 8.18 5.27 138.46 0.73 8.91 16 21 N -0.39 -16.53 11.80 -60.33 -0.71 -17.24 16 22 O 0.07 2.44 11.31 74.83 0.85 3.29 16 23 C 0.17 5.59 8.51 88.38 0.75 6.34 16 24 C -0.05 -0.97 10.51 71.24 0.75 -0.22 16 25 N -0.52 -21.21 11.55 -303.20 -3.50 -24.71 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 2.36 7.70 -2.38 -0.02 2.34 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 3.41 5.99 -2.38 -0.01 3.40 16 30 H 0.04 1.81 6.26 -2.39 -0.01 1.80 16 31 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.02 0.86 6.41 -2.39 -0.02 0.84 16 33 H 0.07 2.67 6.12 -2.39 -0.01 2.66 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.40 327.91 1.49 -68.91 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.01 Total: 11.90 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.83 Total: -9.62 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -7.22 Total: -121.38 kcal Atomic # 8 Polarization: 2.44 SS G_CDS: 0.85 Total: 3.29 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.40 1.49 -68.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.639 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds