Wall clock time and date at job start Fri Apr 10 2020 17:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 H 1.09006 * 109.47103 * 28.14560 * 3 2 1 5 5 C 1.50693 * 109.47234 * 268.14345 * 3 2 1 6 6 H 1.08000 * 119.99668 * 239.99500 * 5 3 2 7 7 C 1.37873 * 120.00227 * 60.00309 * 5 3 2 8 8 N 1.31516 * 119.99937 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99956 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47573 * 59.99688 * 9 7 5 11 11 H 1.48507 * 109.46994 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46934 * 299.99011 * 9 7 5 13 13 N 1.46901 * 109.47143 * 148.13847 * 3 2 1 14 14 C 1.47497 * 111.00029 * 56.76737 * 13 3 2 15 15 C 1.51874 * 107.01290 * 314.96128 * 14 13 3 16 16 C 1.34705 * 127.45299 * 115.17303 * 15 14 13 17 17 C 1.40189 * 107.58714 * 179.97438 * 16 15 14 18 18 N 1.31178 * 108.23940 * 0.02562 * 17 16 15 19 19 N 1.34444 * 124.47447 * 295.14682 * 15 14 13 20 20 C 1.47685 * 124.31252 * 0.07550 * 19 15 14 21 21 C 1.53686 * 106.97317 * 64.44256 * 20 19 15 22 22 C 1.44761 * 110.95764 * 290.50684 * 13 3 2 23 23 H 1.08994 * 107.96312 * 173.47387 * 22 13 3 24 24 C 1.52998 * 108.03849 * 289.89363 * 22 13 3 25 25 O 1.42903 * 109.47339 * 179.54105 * 24 22 13 26 26 H 1.09002 * 109.47222 * 123.87570 * 1 2 3 27 27 H 1.09000 * 109.46802 * 243.87160 * 1 2 3 28 28 H 1.08994 * 109.47357 * 3.86902 * 1 2 3 29 29 H 1.09006 * 109.47257 * 240.00568 * 2 1 3 30 30 H 1.08998 * 109.47451 * 120.00242 * 2 1 3 31 31 H 0.97002 * 119.99801 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.94985 * 195.58745 * 14 13 3 33 33 H 1.08997 * 109.94218 * 74.33498 * 14 13 3 34 34 H 1.07996 * 126.20900 * 359.93485 * 16 15 14 35 35 H 1.08003 * 125.88017 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.95794 * 183.81262 * 20 19 15 37 37 H 1.09005 * 109.94960 * 305.08238 * 20 19 15 38 38 H 1.08998 * 109.18764 * 40.85144 * 21 20 19 39 39 H 1.09004 * 109.18975 * 160.11637 * 21 20 19 40 40 H 1.09004 * 109.47352 * 299.54351 * 24 22 13 41 41 H 1.09006 * 109.47581 * 59.54420 * 24 22 13 42 42 H 0.96704 * 114.00356 * 172.89741 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3068 2.0871 0.4848 5 6 2.2509 1.9008 -1.4200 6 1 3.2319 2.2126 -1.7467 7 6 1.1914 1.9222 -2.3020 8 7 -0.0032 1.5422 -1.9042 9 14 1.4530 2.4896 -4.0624 10 1 2.4516 1.6110 -4.7226 11 1 0.1669 2.4189 -4.8016 12 1 1.9483 3.8896 -4.0628 13 7 3.3123 1.5121 0.7311 14 6 4.3076 0.5924 0.1487 15 6 3.6002 -0.7284 -0.0998 16 6 3.3602 -1.3185 -1.2867 17 6 2.6836 -2.5199 -1.0334 18 7 2.5273 -2.6374 0.2637 19 7 3.0996 -1.5172 0.8669 20 6 3.1654 -1.2095 2.3099 21 6 2.3297 0.0602 2.5364 22 6 3.1081 1.2937 2.1475 23 1 4.0870 1.2390 2.6237 24 6 2.3777 2.5127 2.7143 25 8 2.1504 2.3243 4.1125 26 1 -0.3634 -0.5728 -0.8532 27 1 -0.3633 -0.4526 0.9227 28 1 -0.3634 1.0252 -0.0693 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 -0.7485 1.5569 -2.5249 32 1 5.1324 0.4469 0.8462 33 1 4.6816 0.9966 -0.7919 34 1 3.6380 -0.9353 -2.2575 35 1 2.3488 -3.2269 -1.7780 36 1 2.7497 -2.0362 2.8859 37 1 4.1995 -1.0318 2.6055 38 1 1.4227 0.0042 1.9345 39 1 2.0564 0.1261 3.5896 40 1 2.9861 3.4042 2.5620 41 1 1.4220 2.6335 2.2040 42 1 1.7892 3.1014 4.5606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:01 Heat of formation + Delta-G solvation = 148.651805 kcal Electronic energy + Delta-G solvation = -24890.602420 eV Core-core repulsion = 21684.411377 eV Total energy + Delta-G solvation = -3206.191043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.04839 -39.80648 -37.36597 -35.79802 -34.61333 -32.71509 -32.45384 -30.57931 -28.75471 -28.37092 -26.03380 -25.01040 -24.16620 -22.30763 -21.78206 -20.86762 -20.14619 -18.89759 -18.09562 -17.84515 -16.54620 -16.23759 -15.98714 -15.86389 -15.46057 -15.16777 -15.02588 -14.51638 -14.20004 -14.07201 -13.84162 -13.60250 -13.28021 -13.13746 -12.90209 -12.69290 -12.51571 -12.44947 -12.15255 -12.13458 -11.96348 -11.73163 -11.45056 -11.23728 -11.18900 -10.75291 -10.50286 -10.32180 -9.41847 -8.82974 -8.47973 -7.77761 -6.03929 1.06558 1.46538 1.47692 1.53137 1.69866 2.05916 2.50316 3.06247 3.34308 3.61850 3.68296 3.77409 3.98683 4.07838 4.19898 4.33119 4.34295 4.47472 4.68733 4.70391 4.74136 4.85867 4.89166 4.91609 4.97637 4.99436 5.04151 5.10370 5.33038 5.40714 5.45308 5.64967 5.73840 5.85638 5.90324 6.11940 6.21396 6.28039 6.31986 6.51839 6.83313 6.93505 6.94413 7.08663 7.63107 9.06780 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.009688 C = 0.007494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.811038 B = 2889.450448 C = 3735.344266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.241 4.241 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.500 4.500 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.899 5.899 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.298 1.298 12 H -0.277 1.277 13 N -0.529 5.529 14 C 0.130 3.870 15 C 0.095 3.905 16 C -0.269 4.269 17 C 0.028 3.972 18 N -0.326 5.326 19 N -0.368 5.368 20 C 0.128 3.872 21 C -0.194 4.194 22 C 0.089 3.911 23 H 0.093 0.907 24 C 0.091 3.909 25 O -0.580 6.580 26 H 0.002 0.998 27 H -0.020 1.020 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.248 0.752 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.192 0.808 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -1.937 8.754 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.279 4.279 3 C 0.121 3.879 4 H 0.023 0.977 5 C -0.539 4.539 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.539 5.539 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.224 1.224 12 H -0.203 1.203 13 N -0.250 5.250 14 C 0.001 3.999 15 C -0.034 4.034 16 C -0.298 4.298 17 C -0.156 4.156 18 N -0.148 5.148 19 N -0.153 5.153 20 C 0.009 3.991 21 C -0.233 4.233 22 C -0.021 4.021 23 H 0.111 0.889 24 C 0.013 3.987 25 O -0.388 6.388 26 H 0.021 0.979 27 H -0.002 1.002 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.156 0.844 35 H 0.209 0.791 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.964 -2.750 9.615 12.784 hybrid contribution -1.134 0.676 -2.009 2.404 sum 6.830 -2.074 7.605 10.430 Atomic orbital electron populations 1.21666 0.98762 1.01425 0.93005 1.25272 0.95366 1.00873 1.06394 1.19281 0.84613 0.92018 0.91993 0.97730 1.21276 0.94903 1.42046 0.95662 0.92455 1.25538 0.95451 0.95854 1.01204 1.70404 1.00419 1.48673 1.34433 0.85875 0.76619 0.78790 0.81789 1.19747 1.22420 1.20251 1.61672 1.12130 1.50040 1.01183 1.21372 0.93352 0.83061 1.02104 1.21748 0.97007 0.95209 0.89456 1.20905 1.11911 0.98559 0.98441 1.24127 0.99249 0.98587 0.93629 1.77169 1.21529 1.07386 1.08733 1.49113 1.43193 1.15724 1.07278 1.22484 1.02981 0.98460 0.75158 1.22776 1.01451 0.94676 1.04429 1.20762 0.99398 0.92880 0.89013 0.88917 1.22019 0.98128 0.97646 0.80943 1.86305 1.87693 1.43668 1.21086 0.97888 1.00170 0.91309 0.89291 0.85735 0.94194 0.87585 0.88248 0.84356 0.79120 0.87297 0.86642 0.89845 0.87653 0.92296 0.95933 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.67 7.94 71.98 0.57 -4.10 16 2 C -0.24 -11.13 1.64 30.59 0.05 -11.08 16 3 C 0.23 10.57 1.68 44.17 0.07 10.65 16 4 H 0.00 0.26 5.40 -2.38 -0.01 0.25 16 5 C -0.50 -25.61 7.81 25.60 0.20 -25.41 16 6 H 0.06 2.89 6.99 -2.91 -0.02 2.87 16 7 C 0.02 0.96 5.30 84.65 0.45 1.41 16 8 N -0.90 -50.43 8.47 21.45 0.18 -50.24 16 9 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.53 -19.58 4.48 -860.08 -3.85 -23.43 16 14 C 0.13 4.29 5.61 85.82 0.48 4.77 16 15 C 0.09 3.45 3.55 41.72 0.15 3.60 16 16 C -0.27 -10.35 8.55 21.93 0.19 -10.17 16 17 C 0.03 1.03 11.19 85.26 0.95 1.99 16 18 N -0.33 -12.49 12.18 -56.63 -0.69 -13.18 16 19 N -0.37 -12.86 2.22 -330.50 -0.73 -13.59 16 20 C 0.13 3.54 6.73 86.38 0.58 4.12 16 21 C -0.19 -6.03 4.63 30.16 0.14 -5.89 16 22 C 0.09 2.77 1.89 44.65 0.08 2.86 16 23 H 0.09 2.42 7.56 -2.39 -0.02 2.40 16 24 C 0.09 2.77 6.46 71.98 0.47 3.23 16 25 O -0.58 -14.47 12.29 -148.98 -1.83 -16.30 16 26 H 0.00 0.11 7.80 -2.39 -0.02 0.09 16 27 H -0.02 -1.02 7.68 -2.39 -0.02 -1.04 16 28 H 0.07 3.87 5.20 -2.39 -0.01 3.86 16 29 H 0.09 4.36 2.74 -17.57 -0.05 4.31 16 30 H 0.13 5.14 0.85 -154.23 -0.13 5.01 16 31 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.11 2.69 7.77 -2.39 -0.02 2.67 16 33 H 0.10 3.40 7.22 -2.39 -0.02 3.38 16 34 H 0.14 5.32 8.06 -2.91 -0.02 5.30 16 35 H 0.19 5.94 8.06 -2.91 -0.02 5.92 16 36 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.12 2.46 7.88 -2.38 -0.02 2.44 16 38 H 0.08 3.33 3.68 -2.39 -0.01 3.32 16 39 H 0.11 2.98 6.86 -2.38 -0.02 2.96 16 40 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.02 0.84 6.33 -2.38 -0.02 0.82 16 42 H 0.40 6.29 9.12 -74.05 -0.68 5.62 16 Total: -1.00 -64.09 297.27 -0.30 -64.38 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.21 Total: 31.27 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.39 Total: -24.02 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -5.09 Total: -100.45 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.83 Total: -16.30 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -64.09 -0.30 -64.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.036 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds