Wall clock time and date at job start Fri Apr 10 2020 17:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47501 * 2 1 4 4 H 1.08998 * 109.47100 * 305.91096 * 3 2 1 5 5 C 1.53009 * 109.46724 * 65.90592 * 3 2 1 6 6 C 1.52997 * 109.46946 * 186.60835 * 5 3 2 7 7 C 1.53004 * 109.46952 * 66.07248 * 6 5 3 8 8 C 1.53000 * 109.47139 * 186.07105 * 6 5 3 9 9 C 1.50694 * 109.47135 * 185.90531 * 3 2 1 10 10 O 1.21304 * 120.00474 * 239.99614 * 9 3 2 11 11 N 1.34778 * 119.99908 * 60.00855 * 9 3 2 12 12 C 1.40596 * 120.00154 * 179.97438 * 11 9 3 13 13 C 1.40646 * 126.08027 * 0.02562 * 12 11 9 14 14 N 1.30909 * 108.38830 * 179.97438 * 13 12 11 15 15 N 1.40067 * 108.40361 * 0.02562 * 14 13 12 16 16 C 1.37331 * 126.06782 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99873 * 179.97438 * 16 15 14 18 18 C 1.38985 * 119.99845 * 359.97438 * 16 15 14 19 19 N 1.31290 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47173 * 89.99574 * 20 18 16 22 22 H 1.48503 * 109.47480 * 210.00059 * 20 18 16 23 23 H 1.48506 * 109.47078 * 329.99846 * 20 18 16 24 24 C 1.35671 * 126.08226 * 179.71150 * 12 11 9 25 25 H 1.09006 * 109.47395 * 294.62600 * 1 2 3 26 26 H 1.09003 * 109.47243 * 174.62724 * 1 2 3 27 27 H 1.09002 * 109.47468 * 54.62766 * 1 2 3 28 28 H 1.09003 * 109.46672 * 120.00528 * 2 1 3 29 29 H 1.09003 * 109.46758 * 240.00030 * 2 1 3 30 30 H 1.09000 * 109.47207 * 306.61345 * 5 3 2 31 31 H 1.09005 * 109.46791 * 66.61033 * 5 3 2 32 32 H 1.08999 * 109.47158 * 306.07208 * 6 5 3 33 33 H 1.09003 * 109.46891 * 64.05177 * 7 6 5 34 34 H 1.09002 * 109.47331 * 184.05499 * 7 6 5 35 35 H 1.09003 * 109.46891 * 304.05292 * 7 6 5 36 36 H 1.08996 * 109.46903 * 60.00421 * 8 6 5 37 37 H 1.08999 * 109.47090 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.47180 * 300.00090 * 8 6 5 39 39 H 0.97002 * 120.00108 * 359.97438 * 11 9 3 40 40 H 1.08006 * 125.80709 * 0.02562 * 13 12 11 41 41 H 0.97003 * 120.00168 * 180.02562 * 19 18 16 42 42 H 1.08001 * 126.25281 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5929 1.9859 -0.8323 5 6 1.6548 2.1195 1.3169 6 6 2.0178 3.6044 1.2521 7 6 1.1496 4.2961 0.1991 8 6 1.7736 4.2492 2.6180 9 6 3.5399 1.4449 -0.1462 10 8 4.2327 1.9396 0.7179 11 7 4.1115 0.8975 -1.2371 12 6 5.5108 0.9002 -1.3738 13 6 6.4317 1.4357 -0.4555 14 7 7.6392 1.2507 -0.9260 15 7 7.5375 0.5932 -2.1586 16 6 8.5848 0.2221 -2.9658 17 1 8.3931 -0.2833 -3.9008 18 6 9.8912 0.4971 -2.5795 19 7 10.1241 1.1120 -1.4431 20 14 11.3157 -0.0082 -3.6772 21 1 11.6267 1.0935 -4.6231 22 1 12.5087 -0.2936 -2.8401 23 1 10.9441 -1.2263 -4.4410 24 6 6.2132 0.3815 -2.4122 25 1 -0.3634 0.4282 0.9342 26 1 -0.3634 -1.0232 -0.0962 27 1 -0.3634 0.5949 -0.8380 28 1 1.8932 -0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 0.5821 2.0144 1.4794 31 1 2.1946 1.6491 2.1388 32 1 3.0687 3.7102 0.9831 33 1 0.1042 4.2529 0.5048 34 1 1.4570 5.3374 0.1017 35 1 1.2691 3.7908 -0.7593 36 1 2.3921 3.7564 3.3681 37 1 2.0317 5.3072 2.5717 38 1 0.7227 4.1435 2.8871 39 1 3.5575 0.5017 -1.9280 40 1 6.1847 1.9168 0.4794 41 1 11.0359 1.3043 -1.1737 42 1 5.7999 -0.1078 -3.2818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330533464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:50 Heat of formation + Delta-G solvation = 17.380300 kcal Electronic energy + Delta-G solvation = -21992.223854 eV Core-core repulsion = 18780.340452 eV Total energy + Delta-G solvation = -3211.883403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09810 -39.01056 -36.46500 -34.42470 -33.90101 -32.98014 -30.21312 -29.03560 -27.68515 -27.09964 -25.33878 -24.38477 -21.95108 -20.83101 -20.33909 -19.46290 -19.21711 -17.49726 -16.54869 -15.54113 -15.38013 -15.07759 -14.73918 -14.38834 -14.07475 -13.83950 -13.54264 -13.33125 -13.04583 -12.87087 -12.43564 -12.40627 -12.14722 -11.89518 -11.63478 -11.48087 -11.35558 -11.29199 -11.21289 -11.06125 -10.90593 -10.52370 -10.49399 -10.38813 -10.25814 -9.98259 -9.11543 -8.92674 -8.74236 -8.01492 -6.63930 -6.52532 -4.19194 2.89560 3.06494 3.08645 3.11654 3.68564 3.72638 3.92920 4.46376 4.67253 4.77471 4.82200 5.02350 5.05395 5.10554 5.16554 5.18623 5.45456 5.47708 5.51412 5.64332 5.68552 5.80417 5.88099 5.90588 5.94925 6.00921 6.06049 6.10936 6.22530 6.28160 6.34872 6.49369 6.51971 6.67762 6.95748 7.01823 7.19739 7.30693 7.89903 8.25525 8.35838 8.69020 8.96583 9.42158 9.71782 10.43589 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.029665 B = 0.003676 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.661601 B = 7615.388400 C = 8204.677712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.106 4.106 4 H 0.094 0.906 5 C -0.091 4.091 6 C -0.107 4.107 7 C -0.148 4.148 8 C -0.141 4.141 9 C 0.502 3.498 10 O -0.532 6.532 11 N -0.627 5.627 12 C -0.058 4.058 13 C -0.034 4.034 14 N -0.261 5.261 15 N -0.144 5.144 16 C -0.324 4.324 17 H 0.115 0.885 18 C 0.046 3.954 19 N -0.771 5.771 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.086 4.086 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.395 0.605 40 H 0.176 0.824 41 H 0.274 0.726 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.100 0.117 0.869 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.128 4.128 4 H 0.112 0.888 5 C -0.129 4.129 6 C -0.125 4.125 7 C -0.205 4.205 8 C -0.199 4.199 9 C 0.288 3.712 10 O -0.409 6.409 11 N -0.269 5.269 12 C -0.163 4.163 13 C -0.210 4.210 14 N -0.092 5.092 15 N 0.088 4.912 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.398 5.398 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.237 4.237 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.227 0.773 40 H 0.192 0.808 41 H 0.085 0.915 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.157 0.736 1.845 15.287 hybrid contribution -0.575 -0.609 -1.154 1.426 sum -15.733 0.127 0.691 15.748 Atomic orbital electron populations 1.21816 0.95333 1.01622 1.02022 1.21523 0.96185 0.94906 1.02881 1.21456 0.92636 0.97780 1.00901 0.88800 1.21461 1.00352 0.95114 0.95974 1.21264 1.01989 0.94170 0.95085 1.21912 0.99320 1.00277 0.98981 1.21769 1.00735 1.00266 0.97106 1.20394 0.89871 0.79100 0.81805 1.90557 1.63929 1.45441 1.41003 1.42600 1.05188 1.57528 1.21590 1.17306 0.82005 1.16715 1.00294 1.24102 0.89418 1.06081 1.01356 1.78241 1.18561 1.17491 0.94924 1.44531 1.02745 1.31600 1.12311 1.19854 0.83720 1.39577 1.02485 0.86711 1.25625 0.99185 0.95692 0.96554 1.70219 1.21643 1.29722 1.18178 0.85842 0.79653 0.79351 0.79376 1.19620 1.20105 1.18843 1.21260 0.85438 1.14847 1.02113 0.92372 0.92675 0.92623 0.91307 0.91554 0.91688 0.91142 0.88983 0.93212 0.93068 0.92841 0.92647 0.93119 0.93436 0.77255 0.80761 0.91524 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.56 37.15 0.36 -0.84 16 2 C -0.12 -1.19 5.34 -26.74 -0.14 -1.33 16 3 C -0.11 -1.28 2.08 -91.77 -0.19 -1.47 16 4 H 0.09 1.00 6.25 -51.93 -0.32 0.68 16 5 C -0.09 -1.08 3.69 -26.73 -0.10 -1.18 16 6 C -0.11 -1.34 2.71 -90.62 -0.25 -1.59 16 7 C -0.15 -1.58 9.06 37.16 0.34 -1.25 16 8 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 9 C 0.50 8.61 6.79 -10.99 -0.07 8.54 16 10 O -0.53 -11.12 11.25 5.54 0.06 -11.06 16 11 N -0.63 -11.18 5.32 -10.00 -0.05 -11.23 16 12 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 13 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 14 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 15 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 16 C -0.32 -8.70 10.25 -14.81 -0.15 -8.85 16 17 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 18 C 0.05 1.21 5.50 -17.51 -0.10 1.12 16 19 N -0.77 -21.83 11.81 55.49 0.66 -21.17 16 20 Si 0.93 19.13 29.55 -169.99 -5.02 14.10 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.09 -2.05 11.49 -16.40 -0.19 -2.24 16 25 H 0.06 0.44 6.71 -51.93 -0.35 0.10 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.65 7.40 -51.93 -0.38 0.26 16 30 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 31 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 32 H 0.09 1.49 6.02 -51.93 -0.31 1.17 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.56 6.30 -51.93 -0.33 0.24 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.39 5.52 8.18 -40.82 -0.33 5.19 16 40 H 0.18 4.62 5.92 -52.48 -0.31 4.31 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -32.58 337.26 -6.35 -38.94 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.44 Total: 10.14 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -0.92 Total: -13.36 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.88 Total: -43.84 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.06 Total: -11.06 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.58 -6.35 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330533464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.318 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds