Wall clock time and date at job start Fri Apr 10 2020 17:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47045 * 2 1 4 4 C 1.46898 * 111.00476 * 294.41338 * 3 2 1 5 5 C 1.50705 * 109.46777 * 292.11066 * 4 3 2 6 6 C 1.38223 * 120.01279 * 104.99335 * 5 4 3 7 7 C 1.38215 * 120.02556 * 180.27520 * 6 5 4 8 8 C 1.38274 * 120.05038 * 359.48894 * 7 6 5 9 9 C 1.38173 * 120.02425 * 0.50721 * 8 7 6 10 10 C 1.38434 * 120.01498 * 285.01003 * 5 4 3 11 11 F 1.35109 * 120.02311 * 359.95898 * 10 5 4 12 12 C 1.46903 * 110.99695 * 58.36634 * 3 2 1 13 13 C 1.52998 * 109.47217 * 66.04791 * 12 3 2 14 14 H 1.09001 * 109.47072 * 304.99491 * 13 12 3 15 15 C 1.52994 * 109.47323 * 65.00020 * 13 12 3 16 16 C 1.53000 * 109.47163 * 185.00148 * 13 12 3 17 17 C 1.50698 * 109.47375 * 174.99948 * 16 13 12 18 18 H 1.08000 * 119.99798 * 359.97438 * 17 16 13 19 19 C 1.37872 * 120.00281 * 180.02562 * 17 16 13 20 20 N 1.31521 * 119.99929 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00120 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47083 * 89.99949 * 21 19 17 23 23 H 1.48498 * 109.47130 * 209.99730 * 21 19 17 24 24 H 1.48490 * 109.47262 * 329.99888 * 21 19 17 25 25 H 1.09004 * 109.46907 * 176.72709 * 1 2 3 26 26 H 1.09003 * 109.46928 * 296.72661 * 1 2 3 27 27 H 1.09003 * 109.47336 * 56.72551 * 1 2 3 28 28 H 1.09001 * 109.46984 * 240.00208 * 2 1 3 29 29 H 1.08994 * 109.47121 * 120.00590 * 2 1 3 30 30 H 1.09000 * 109.47572 * 172.10921 * 4 3 2 31 31 H 1.09003 * 109.47225 * 52.10949 * 4 3 2 32 32 H 1.08004 * 119.98570 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.97888 * 179.71766 * 7 6 5 34 34 H 1.07999 * 119.98483 * 180.25470 * 8 7 6 35 35 H 1.07994 * 120.01296 * 179.76612 * 9 8 7 36 36 H 1.09004 * 109.46798 * 186.04608 * 12 3 2 37 37 H 1.08998 * 109.47140 * 306.03946 * 12 3 2 38 38 H 1.09004 * 109.47181 * 300.00053 * 15 13 12 39 39 H 1.08994 * 109.47744 * 60.00002 * 15 13 12 40 40 H 1.09000 * 109.47267 * 180.02562 * 15 13 12 41 41 H 1.09007 * 109.46800 * 294.99670 * 16 13 12 42 42 H 1.09002 * 109.47461 * 54.99256 * 16 13 12 43 43 H 0.97001 * 119.99710 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6608 2.0703 -1.2487 5 6 2.4271 1.4608 -2.3944 6 6 1.7862 0.6209 -3.2857 7 6 2.4901 0.0572 -4.3331 8 6 3.8334 0.3411 -4.4969 9 6 4.4762 1.1805 -3.6072 10 6 3.7732 1.7416 -2.5543 11 9 4.4005 2.5628 -1.6840 12 6 1.5169 2.1210 1.1677 13 6 2.1146 1.5237 2.4432 14 1 1.9018 0.4552 2.4783 15 6 3.6288 1.7426 2.4480 16 6 1.4966 2.2071 3.6646 17 6 1.9924 1.5367 4.9199 18 1 2.6792 0.7059 4.8531 19 6 1.5684 1.9832 6.1535 20 7 0.7316 2.9946 6.2348 21 14 2.1824 1.1516 7.7094 22 1 3.4251 1.8209 8.1709 23 1 1.1445 1.2516 8.7667 24 1 2.4658 -0.2785 7.4276 25 1 -0.3633 -1.0260 -0.0587 26 1 -0.3633 0.4622 0.9179 27 1 -0.3634 0.5638 -0.8592 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9098 3.1284 -1.1671 31 1 0.5912 1.9617 -1.4284 32 1 0.7362 0.4011 -3.1607 33 1 1.9897 -0.6026 -5.0264 34 1 4.3814 -0.0967 -5.3181 35 1 5.5262 1.3991 -3.7330 36 1 1.8048 3.1693 1.0879 37 1 0.4303 2.0446 1.2051 38 1 4.0691 1.2556 1.5778 39 1 3.8416 2.8109 2.4129 40 1 4.0546 1.3166 3.3564 41 1 1.7838 3.2586 3.6766 42 1 0.4106 2.1277 3.6148 43 1 0.4330 3.3084 7.1027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119237664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:12 Heat of formation + Delta-G solvation = -33.033528 kcal Electronic energy + Delta-G solvation = -22091.491521 eV Core-core repulsion = 18857.502049 eV Total energy + Delta-G solvation = -3233.989472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -48.72989 -39.50372 -37.95026 -34.62623 -32.34579 -31.66350 -30.69010 -29.55686 -26.97466 -26.11037 -25.01296 -23.15958 -22.85645 -21.96348 -20.16738 -18.52451 -17.53906 -16.53658 -16.40136 -15.87744 -15.75533 -15.30177 -15.11494 -14.40923 -14.37894 -13.93971 -13.71773 -13.24370 -13.00810 -12.72971 -12.44819 -12.30915 -12.19664 -12.07585 -11.77673 -11.45861 -11.25841 -11.21467 -10.96953 -10.81365 -10.77439 -10.50471 -10.22845 -10.19869 -9.52004 -9.17949 -9.04507 -8.92026 -8.69483 -8.29021 -7.92200 -5.94175 -3.94852 1.04683 1.08222 3.35474 3.41542 3.42884 3.45166 4.25380 4.27683 4.51623 4.60975 4.63537 4.81952 5.03222 5.21107 5.23301 5.31748 5.41797 5.44646 5.53962 5.61860 5.74792 5.78147 5.89024 5.94446 6.02321 6.05749 6.16047 6.20613 6.25073 6.29164 6.40839 6.49736 6.64494 6.77829 6.79660 7.08639 7.21965 7.26881 7.41579 7.49212 7.73929 7.90720 8.06663 8.51190 9.11591 9.68322 11.17408 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031015 B = 0.003651 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.581496 B = 7668.271053 C = 8017.423624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 N -0.525 5.525 4 C 0.087 3.913 5 C -0.106 4.106 6 C -0.088 4.088 7 C -0.136 4.136 8 C -0.096 4.096 9 C -0.161 4.161 10 C 0.125 3.875 11 F -0.128 7.128 12 C 0.057 3.943 13 C -0.079 4.079 14 H 0.056 0.944 15 C -0.122 4.122 16 C 0.028 3.972 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.052 0.948 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -4.985 -22.417 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.080 4.080 3 N -0.248 5.248 4 C -0.040 4.040 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.154 4.154 8 C -0.114 4.114 9 C -0.180 4.180 10 C 0.105 3.895 11 F -0.106 7.106 12 C -0.070 4.070 13 C -0.098 4.098 14 H 0.074 0.926 15 C -0.179 4.179 16 C -0.010 4.010 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.960 -4.842 -22.203 22.917 hybrid contribution -0.514 -0.223 1.037 1.179 sum 2.445 -5.065 -21.166 21.900 Atomic orbital electron populations 1.22420 0.98568 1.01927 1.02239 1.22164 0.92678 0.90608 1.02596 1.62288 1.59337 1.02126 1.01034 1.21000 0.96648 0.98332 0.88029 1.19942 0.92960 0.99878 0.97968 1.20972 1.00069 0.95623 0.93969 1.21131 0.94592 1.01003 0.98699 1.20959 0.94717 0.97179 0.98574 1.21165 1.00874 1.00326 0.95608 1.17537 0.90514 0.92444 0.89019 1.91543 1.82039 1.69315 1.67752 1.22388 0.97187 0.97510 0.89869 1.21193 0.95738 0.99484 0.93341 0.92602 1.21569 0.95942 1.00293 1.00114 1.19120 0.95381 0.95724 0.90744 1.21237 1.26732 1.15968 0.90922 0.92613 1.25015 0.95265 0.95187 0.99091 1.69971 1.33222 1.26196 1.24365 0.86641 0.78461 0.79941 0.83249 1.20731 1.21363 1.19929 0.92441 0.91492 0.93087 0.91513 0.89973 0.89923 0.93310 0.85474 0.85660 0.85406 0.84983 0.91465 0.94638 0.93938 0.94252 0.92940 0.96652 0.97032 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 9.21 37.16 0.34 -2.11 16 2 C 0.05 0.66 5.65 -3.83 -0.02 0.64 16 3 N -0.53 -7.95 4.14 -236.07 -0.98 -8.93 16 4 C 0.09 1.14 4.64 -4.97 -0.02 1.11 16 5 C -0.11 -1.27 4.51 -104.55 -0.47 -1.74 16 6 C -0.09 -0.86 8.97 -39.60 -0.36 -1.21 16 7 C -0.14 -1.15 10.04 -39.58 -0.40 -1.54 16 8 C -0.10 -0.81 10.04 -39.59 -0.40 -1.21 16 9 C -0.16 -1.65 10.03 -39.52 -0.40 -2.05 16 10 C 0.12 1.58 7.25 -39.42 -0.29 1.30 16 11 F -0.13 -1.91 16.76 2.25 0.04 -1.87 16 12 C 0.06 1.01 4.07 -3.82 -0.02 0.99 16 13 C -0.08 -1.64 2.25 -90.62 -0.20 -1.85 16 14 H 0.06 1.18 6.37 -51.93 -0.33 0.85 16 15 C -0.12 -2.48 8.89 37.15 0.33 -2.15 16 16 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 17 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 18 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 21 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.99 6.43 -51.93 -0.33 0.65 16 27 H 0.05 0.58 6.25 -51.93 -0.32 0.26 16 28 H 0.07 0.86 6.65 -51.93 -0.35 0.51 16 29 H 0.08 1.27 6.45 -51.93 -0.33 0.93 16 30 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 31 H 0.05 0.58 5.88 -51.93 -0.31 0.27 16 32 H 0.13 1.05 8.00 -52.48 -0.42 0.63 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 37 H 0.04 0.62 6.02 -51.93 -0.31 0.31 16 38 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -30.57 343.53 -9.21 -39.78 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.75 Total: -2.11 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.41 Total: -22.47 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.24 Total: -35.44 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.57 -9.21 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119237664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.745 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds