Wall clock time and date at job start Fri Apr 10 2020 17:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47045 * 2 1 4 4 C 1.46898 * 111.00476 * 294.41338 * 3 2 1 5 5 C 1.50705 * 109.46777 * 292.11066 * 4 3 2 6 6 C 1.38223 * 120.01279 * 104.99335 * 5 4 3 7 7 C 1.38215 * 120.02556 * 180.27520 * 6 5 4 8 8 C 1.38274 * 120.05038 * 359.48894 * 7 6 5 9 9 C 1.38173 * 120.02425 * 0.50721 * 8 7 6 10 10 C 1.38434 * 120.01498 * 285.01003 * 5 4 3 11 11 F 1.35109 * 120.02311 * 359.95898 * 10 5 4 12 12 C 1.46903 * 110.99695 * 58.36634 * 3 2 1 13 13 C 1.52998 * 109.47217 * 66.04791 * 12 3 2 14 14 H 1.09001 * 109.47072 * 304.99491 * 13 12 3 15 15 C 1.52994 * 109.47323 * 65.00020 * 13 12 3 16 16 C 1.53000 * 109.47163 * 185.00148 * 13 12 3 17 17 C 1.50698 * 109.47375 * 174.99948 * 16 13 12 18 18 H 1.08000 * 119.99798 * 359.97438 * 17 16 13 19 19 C 1.37872 * 120.00281 * 180.02562 * 17 16 13 20 20 N 1.31521 * 119.99929 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00120 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47083 * 89.99949 * 21 19 17 23 23 H 1.48498 * 109.47130 * 209.99730 * 21 19 17 24 24 H 1.48490 * 109.47262 * 329.99888 * 21 19 17 25 25 H 1.09004 * 109.46907 * 176.72709 * 1 2 3 26 26 H 1.09003 * 109.46928 * 296.72661 * 1 2 3 27 27 H 1.09003 * 109.47336 * 56.72551 * 1 2 3 28 28 H 1.09001 * 109.46984 * 240.00208 * 2 1 3 29 29 H 1.08994 * 109.47121 * 120.00590 * 2 1 3 30 30 H 1.09000 * 109.47572 * 172.10921 * 4 3 2 31 31 H 1.09003 * 109.47225 * 52.10949 * 4 3 2 32 32 H 1.08004 * 119.98570 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.97888 * 179.71766 * 7 6 5 34 34 H 1.07999 * 119.98483 * 180.25470 * 8 7 6 35 35 H 1.07994 * 120.01296 * 179.76612 * 9 8 7 36 36 H 1.09004 * 109.46798 * 186.04608 * 12 3 2 37 37 H 1.08998 * 109.47140 * 306.03946 * 12 3 2 38 38 H 1.09004 * 109.47181 * 300.00053 * 15 13 12 39 39 H 1.08994 * 109.47744 * 60.00002 * 15 13 12 40 40 H 1.09000 * 109.47267 * 180.02562 * 15 13 12 41 41 H 1.09007 * 109.46800 * 294.99670 * 16 13 12 42 42 H 1.09002 * 109.47461 * 54.99256 * 16 13 12 43 43 H 0.97001 * 119.99710 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6608 2.0703 -1.2487 5 6 2.4271 1.4608 -2.3944 6 6 1.7862 0.6209 -3.2857 7 6 2.4901 0.0572 -4.3331 8 6 3.8334 0.3411 -4.4969 9 6 4.4762 1.1805 -3.6072 10 6 3.7732 1.7416 -2.5543 11 9 4.4005 2.5628 -1.6840 12 6 1.5169 2.1210 1.1677 13 6 2.1146 1.5237 2.4432 14 1 1.9018 0.4552 2.4783 15 6 3.6288 1.7426 2.4480 16 6 1.4966 2.2071 3.6646 17 6 1.9924 1.5367 4.9199 18 1 2.6792 0.7059 4.8531 19 6 1.5684 1.9832 6.1535 20 7 0.7316 2.9946 6.2348 21 14 2.1824 1.1516 7.7094 22 1 3.4251 1.8209 8.1709 23 1 1.1445 1.2516 8.7667 24 1 2.4658 -0.2785 7.4276 25 1 -0.3633 -1.0260 -0.0587 26 1 -0.3633 0.4622 0.9179 27 1 -0.3634 0.5638 -0.8592 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9098 3.1284 -1.1671 31 1 0.5912 1.9617 -1.4284 32 1 0.7362 0.4011 -3.1607 33 1 1.9897 -0.6026 -5.0264 34 1 4.3814 -0.0967 -5.3181 35 1 5.5262 1.3991 -3.7330 36 1 1.8048 3.1693 1.0879 37 1 0.4303 2.0446 1.2051 38 1 4.0691 1.2556 1.5778 39 1 3.8416 2.8109 2.4129 40 1 4.0546 1.3166 3.3564 41 1 1.7838 3.2586 3.6766 42 1 0.4106 2.1277 3.6148 43 1 0.4330 3.3084 7.1027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119237664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:11 Heat of formation + Delta-G solvation = -49.185511 kcal Electronic energy + Delta-G solvation = -22092.191924 eV Core-core repulsion = 18857.502049 eV Total energy + Delta-G solvation = -3234.689874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -49.71650 -40.43810 -39.08124 -36.35998 -34.20283 -32.78466 -31.46734 -30.70077 -28.88722 -27.49965 -26.26099 -24.93005 -23.62393 -23.09633 -21.39058 -20.12281 -18.49650 -18.36933 -17.44110 -17.07667 -16.67553 -16.56198 -16.38837 -16.13768 -15.37782 -15.18187 -14.81832 -14.62855 -14.28004 -14.02392 -13.81139 -13.61260 -13.35508 -13.17521 -13.07781 -12.99151 -12.73669 -12.61410 -12.49483 -12.28666 -12.19695 -11.99961 -11.82213 -11.76515 -11.27381 -11.05736 -10.89919 -10.52741 -9.87636 -9.52339 -9.12690 -8.17222 -6.26197 0.27985 0.33399 1.39575 1.40801 1.51681 2.41880 2.65138 3.15268 3.16153 3.46528 3.72800 3.84923 4.01811 4.15559 4.21253 4.28727 4.34531 4.42410 4.46048 4.50910 4.54863 4.61991 4.66225 4.82225 4.88338 4.95597 5.01625 5.07184 5.15012 5.21212 5.27073 5.31107 5.36887 5.45792 5.47215 5.49886 5.53447 5.56402 5.80734 5.89378 6.02863 6.12762 6.23765 6.32795 6.89373 7.41872 8.94886 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031015 B = 0.003651 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.581496 B = 7668.271053 C = 8017.423624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.091 3.909 5 C -0.121 4.121 6 C -0.089 4.089 7 C -0.129 4.129 8 C -0.090 4.090 9 C -0.167 4.167 10 C 0.090 3.910 11 F -0.151 7.151 12 C 0.070 3.930 13 C -0.068 4.068 14 H 0.055 0.945 15 C -0.110 4.110 16 C 0.035 3.965 17 C -0.528 4.528 18 H 0.059 0.941 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.960 3.040 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.263 1.263 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.037 0.963 41 H -0.013 1.013 42 H -0.013 1.013 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 -7.077 -24.378 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.037 4.037 5 C -0.122 4.122 6 C -0.108 4.108 7 C -0.146 4.146 8 C -0.108 4.108 9 C -0.186 4.186 10 C 0.070 3.930 11 F -0.130 7.130 12 C -0.057 4.057 13 C -0.087 4.087 14 H 0.073 0.927 15 C -0.168 4.168 16 C -0.002 4.002 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.188 1.188 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.005 0.995 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.247 -6.943 -24.184 25.370 hybrid contribution -0.608 0.410 1.531 1.697 sum 2.639 -6.534 -22.653 23.724 Atomic orbital electron populations 1.22343 0.97493 1.03025 1.01572 1.22152 0.93535 0.89640 1.02452 1.62189 1.59647 1.02663 1.00994 1.20965 0.97676 0.97601 0.87414 1.19893 0.92767 1.01214 0.98328 1.21211 1.00958 0.94873 0.93753 1.21540 0.94561 1.00290 0.98246 1.21375 0.95042 0.95883 0.98512 1.21408 1.01542 1.00382 0.95227 1.17952 0.91287 0.93666 0.90050 1.91478 1.82509 1.70281 1.68747 1.22065 0.96802 0.97067 0.89782 1.20978 0.95894 0.98899 0.92911 0.92686 1.21443 0.95418 0.99857 1.00043 1.18987 0.94023 0.94443 0.92768 1.21618 1.26751 1.16147 0.92065 0.92294 1.25939 0.95357 0.95798 1.02796 1.70105 1.34454 1.27670 1.25375 0.85515 0.77999 0.79245 0.78721 1.19987 1.20803 1.18757 0.90730 0.94070 0.91485 0.89831 0.91816 0.91223 0.91931 0.83794 0.82518 0.82286 0.83968 0.92311 0.94816 0.92266 0.94915 0.94383 0.99445 0.99462 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 9.21 71.98 0.66 -3.80 16 2 C 0.05 1.34 5.65 86.30 0.49 1.82 16 3 N -0.53 -16.04 4.14 -900.79 -3.73 -19.77 16 4 C 0.09 2.31 4.64 85.56 0.40 2.71 16 5 C -0.12 -2.73 4.51 -19.82 -0.09 -2.82 16 6 C -0.09 -1.48 8.97 22.26 0.20 -1.28 16 7 C -0.13 -1.64 10.04 22.27 0.22 -1.41 16 8 C -0.09 -1.20 10.04 22.26 0.22 -0.98 16 9 C -0.17 -3.13 10.03 22.31 0.22 -2.90 16 10 C 0.09 2.23 7.25 22.37 0.16 2.40 16 11 F -0.15 -4.63 16.76 44.97 0.75 -3.88 16 12 C 0.07 2.55 4.07 86.30 0.35 2.90 16 13 C -0.07 -2.92 2.25 -10.80 -0.02 -2.95 16 14 H 0.05 2.37 6.37 -2.39 -0.02 2.36 16 15 C -0.11 -4.58 8.89 71.98 0.64 -3.94 16 16 C 0.04 1.91 4.45 29.85 0.13 2.05 16 17 C -0.53 -30.58 8.41 25.60 0.22 -30.37 16 18 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 20 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 21 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.20 6.43 -2.39 -0.02 1.19 16 27 H 0.07 1.38 6.25 -2.39 -0.01 1.36 16 28 H 0.08 1.97 6.65 -2.39 -0.02 1.96 16 29 H 0.06 1.94 6.45 -2.39 -0.02 1.92 16 30 H 0.07 1.93 7.83 -2.39 -0.02 1.91 16 31 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 32 H 0.14 1.84 8.00 -2.91 -0.02 1.82 16 33 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.06 2.21 7.91 -2.38 -0.02 2.19 16 37 H 0.03 1.23 6.02 -2.39 -0.01 1.21 16 38 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 41 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.64 343.53 4.58 -63.05 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.98 Total: 9.24 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 4.27 Total: -38.21 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.45 Total: -77.57 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.75 Total: -3.88 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.64 4.58 -63.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119237664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.867 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds