Wall clock time and date at job start Fri Apr 10 2020 17:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 H 1.08996 * 109.47359 * 304.99986 * 3 2 1 5 5 C 1.52993 * 109.47018 * 65.00654 * 3 2 1 6 6 N 1.46506 * 109.47097 * 185.00132 * 3 2 1 7 7 N 1.40586 * 127.38686 * 304.41632 * 6 3 2 8 8 N 1.28908 * 106.83599 * 179.97438 * 7 6 3 9 9 N 1.28415 * 110.35288 * 359.74723 * 8 7 6 10 10 C 1.31566 * 110.50038 * 0.42129 * 9 8 7 11 11 N 1.38222 * 126.45845 * 179.85657 * 10 9 8 12 12 C 1.36927 * 119.99899 * 269.81681 * 11 10 9 13 13 H 1.07999 * 120.00126 * 185.55372 * 12 11 10 14 14 C 1.38806 * 119.99977 * 5.28195 * 12 11 10 15 15 N 1.31564 * 119.99750 * 351.38770 * 14 12 11 16 16 Si 1.86804 * 120.00086 * 171.38583 * 14 12 11 17 17 H 1.48500 * 109.46778 * 89.99912 * 16 14 12 18 18 H 1.48496 * 109.47024 * 209.99799 * 16 14 12 19 19 H 1.48501 * 109.47076 * 330.00154 * 16 14 12 20 20 C 1.46500 * 120.00103 * 89.82339 * 11 10 9 21 21 C 1.54268 * 110.02908 * 237.06760 * 20 11 10 22 22 C 1.54886 * 104.19692 * 217.10556 * 21 20 11 23 23 C 1.54885 * 102.75064 * 37.94156 * 22 21 20 24 24 C 1.53876 * 110.03524 * 119.90386 * 20 11 10 25 25 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46871 * 299.99466 * 1 2 3 27 27 H 1.08993 * 109.47758 * 59.99750 * 1 2 3 28 28 H 1.09006 * 109.46563 * 240.00496 * 2 1 3 29 29 H 1.09002 * 109.47674 * 120.00511 * 2 1 3 30 30 H 1.08996 * 109.47602 * 59.99480 * 5 3 2 31 31 H 1.09002 * 109.47142 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47189 * 299.99925 * 5 3 2 33 33 H 0.97000 * 119.99923 * 185.00970 * 15 14 12 34 34 H 1.08998 * 110.01928 * 358.50398 * 20 11 10 35 35 H 1.09000 * 110.48838 * 335.78179 * 21 20 11 36 36 H 1.08998 * 110.48655 * 98.42648 * 21 20 11 37 37 H 1.09005 * 110.75291 * 279.62873 * 22 21 20 38 38 H 1.09001 * 110.76158 * 156.25697 * 22 21 20 39 39 H 1.08996 * 110.49116 * 203.38047 * 23 22 21 40 40 H 1.08998 * 110.59940 * 80.78772 * 23 22 21 41 41 H 1.08997 * 110.02985 * 238.56747 * 24 20 11 42 42 H 1.08999 * 110.02987 * 359.94634 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.4258 0.7874 0.7091 8 7 5.5983 1.0549 0.2451 9 7 5.5074 1.8066 -0.7921 10 6 4.2473 2.0785 -1.0551 11 7 3.7749 2.8594 -2.0932 12 6 3.5996 4.2053 -1.9126 13 1 3.1470 4.8003 -2.6920 14 6 3.9987 4.8040 -0.7256 15 7 4.3868 4.0606 0.2881 16 14 3.9846 6.6653 -0.5674 17 1 2.6624 7.1087 -0.0572 18 1 5.0478 7.0898 0.3784 19 1 4.2324 7.2770 -1.8977 20 6 3.4615 2.2469 -3.3866 21 6 4.2764 2.9284 -4.5052 22 6 3.3054 2.9698 -5.7112 23 6 1.9420 3.2736 -5.0422 24 6 1.9772 2.4664 -3.7280 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0699 1.5874 2.1491 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1251 1.3971 33 1 4.5960 4.4737 1.1404 34 1 3.6843 1.1804 -3.3582 35 1 4.5602 3.9384 -4.2093 36 1 5.1602 2.3382 -4.7471 37 1 3.2799 2.0059 -6.2197 38 1 3.5821 3.7655 -6.4029 39 1 1.1222 2.9353 -5.6758 40 1 1.8465 4.3391 -4.8329 41 1 1.4799 1.5064 -3.8661 42 1 1.4898 3.0278 -2.9309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119651693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:25 Heat of formation + Delta-G solvation = 118.881670 kcal Electronic energy + Delta-G solvation = -23885.687164 eV Core-core repulsion = 20710.497942 eV Total energy + Delta-G solvation = -3175.189222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16492 -38.16905 -36.30330 -34.72640 -31.74726 -31.38622 -29.68451 -28.63489 -28.18172 -26.89394 -24.91105 -24.14134 -22.32747 -20.88099 -20.17937 -19.58274 -19.46134 -17.65348 -16.19024 -15.76736 -15.06138 -14.71155 -14.52141 -14.30575 -14.17531 -13.40581 -13.11572 -12.87465 -12.76905 -12.22789 -12.15105 -11.72913 -11.57229 -11.42279 -11.27516 -11.10666 -10.99878 -10.81978 -10.73468 -10.65617 -10.60704 -10.55107 -10.29906 -10.22761 -10.10958 -9.94508 -9.40303 -9.06800 -8.88307 -8.43952 -7.55560 -6.11104 -3.65834 2.68846 3.20474 3.22557 3.31603 3.33384 4.08747 4.18779 4.72489 4.98995 5.02228 5.11033 5.19640 5.25802 5.36608 5.42574 5.57947 5.73637 5.80728 5.81783 5.96258 6.02825 6.03775 6.08375 6.12633 6.14923 6.20522 6.26390 6.28502 6.31319 6.45418 6.49548 6.61048 6.68840 6.82423 6.91190 6.95808 7.08730 7.12608 7.45927 7.55301 8.03614 8.89949 9.39256 9.74971 10.22450 10.92593 Molecular weight = 279.18amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.009761 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.140468 B = 2867.984667 C = 3761.333921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.170 3.830 4 H 0.099 0.901 5 C -0.152 4.152 6 N -0.379 5.379 7 N -0.136 5.136 8 N -0.064 5.064 9 N -0.352 5.352 10 C 0.584 3.416 11 N -0.510 5.510 12 C -0.273 4.273 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.891 5.891 16 Si 0.924 3.076 17 H -0.286 1.286 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.179 3.821 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.138 4.138 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.268 0.732 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -3.708 -6.184 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.066 3.934 4 H 0.117 0.883 5 C -0.210 4.210 6 N -0.181 5.181 7 N -0.123 5.123 8 N -0.061 5.061 9 N -0.211 5.211 10 C 0.222 3.778 11 N -0.232 5.232 12 C -0.400 4.400 13 H 0.116 0.884 14 C -0.191 4.191 15 N -0.533 5.533 16 Si 0.753 3.247 17 H -0.213 1.213 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.073 3.927 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.265 -4.187 -5.297 10.672 hybrid contribution -0.913 1.531 0.062 1.783 sum -9.178 -2.657 -5.235 10.895 Atomic orbital electron populations 1.21765 0.95003 1.01620 1.02139 1.21861 0.96028 0.96176 1.02863 1.21046 0.75976 0.96068 1.00360 0.88293 1.22058 1.00096 1.02608 0.96233 1.52097 1.07202 1.37150 1.21643 1.81971 0.93803 1.20935 1.15595 1.77607 1.15270 1.08835 1.04360 1.74650 1.16170 1.17328 1.12973 1.20527 0.85811 0.86464 0.84972 1.40790 1.73637 1.04331 1.04394 1.19251 1.37633 0.80726 1.02413 0.88402 1.24967 0.98786 0.99238 0.96149 1.69114 1.47980 1.34159 1.02089 0.85937 0.77335 0.83502 0.77938 1.21330 1.21333 1.20032 1.21136 0.92992 0.95142 0.83473 1.22758 0.97365 1.03026 0.93886 1.22449 0.95733 1.00514 0.97454 1.22259 0.96729 1.00378 0.96171 1.22654 0.97746 0.99394 0.97930 0.92617 0.92202 0.92575 0.92116 0.90930 0.92359 0.90683 0.92159 0.91967 0.92347 0.89479 0.92370 0.92296 0.92162 0.92732 0.91641 0.92848 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.13 -1.96 5.64 -26.73 -0.15 -2.11 16 3 C 0.17 3.13 3.24 -67.93 -0.22 2.90 16 4 H 0.10 1.84 7.62 -51.93 -0.40 1.45 16 5 C -0.15 -2.70 9.27 37.15 0.34 -2.35 16 6 N -0.38 -8.56 3.00 -55.34 -0.17 -8.72 16 7 N -0.14 -3.31 13.83 60.35 0.83 -2.48 16 8 N -0.06 -1.70 13.38 60.35 0.81 -0.89 16 9 N -0.35 -9.53 11.72 30.10 0.35 -9.18 16 10 C 0.58 14.36 4.71 -320.35 -1.51 12.85 16 11 N -0.51 -11.47 2.36 -108.30 -0.26 -11.73 16 12 C -0.27 -6.47 7.77 -15.07 -0.12 -6.59 16 13 H 0.10 2.21 7.54 -52.49 -0.40 1.81 16 14 C 0.01 0.22 5.43 -17.46 -0.09 0.13 16 15 N -0.89 -24.25 10.12 55.49 0.56 -23.69 16 16 Si 0.92 20.59 29.57 -169.99 -5.03 15.56 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 C 0.18 3.29 3.38 -66.81 -0.23 3.06 16 21 C -0.13 -2.21 6.40 -25.07 -0.16 -2.37 16 22 C -0.12 -1.65 6.91 -24.74 -0.17 -1.82 16 23 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 24 C -0.14 -2.12 6.21 -25.61 -0.16 -2.28 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 33 H 0.27 7.43 8.32 -40.82 -0.34 7.09 16 34 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 35 H 0.09 1.66 6.88 -51.93 -0.36 1.30 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.34 7.14 -51.93 -0.37 0.97 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -29.02 337.01 -6.91 -35.93 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.82 Total: 1.79 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.28 Total: -1.66 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 2.13 Total: -56.69 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.02 -6.91 -35.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119651693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.811 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds