Wall clock time and date at job start Fri Apr 10 2020 17:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 H 1.08996 * 109.47359 * 304.99986 * 3 2 1 5 5 C 1.52993 * 109.47018 * 65.00654 * 3 2 1 6 6 N 1.46506 * 109.47097 * 185.00132 * 3 2 1 7 7 N 1.40586 * 127.38686 * 304.41632 * 6 3 2 8 8 N 1.28908 * 106.83599 * 179.97438 * 7 6 3 9 9 N 1.28415 * 110.35288 * 359.74723 * 8 7 6 10 10 C 1.31566 * 110.50038 * 0.42129 * 9 8 7 11 11 N 1.38222 * 126.45845 * 179.85657 * 10 9 8 12 12 C 1.36927 * 119.99899 * 269.81681 * 11 10 9 13 13 H 1.07999 * 120.00126 * 185.55372 * 12 11 10 14 14 C 1.38806 * 119.99977 * 5.28195 * 12 11 10 15 15 N 1.31564 * 119.99750 * 351.38770 * 14 12 11 16 16 Si 1.86804 * 120.00086 * 171.38583 * 14 12 11 17 17 H 1.48500 * 109.46778 * 89.99912 * 16 14 12 18 18 H 1.48496 * 109.47024 * 209.99799 * 16 14 12 19 19 H 1.48501 * 109.47076 * 330.00154 * 16 14 12 20 20 C 1.46500 * 120.00103 * 89.82339 * 11 10 9 21 21 C 1.54268 * 110.02908 * 237.06760 * 20 11 10 22 22 C 1.54886 * 104.19692 * 217.10556 * 21 20 11 23 23 C 1.54885 * 102.75064 * 37.94156 * 22 21 20 24 24 C 1.53876 * 110.03524 * 119.90386 * 20 11 10 25 25 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46871 * 299.99466 * 1 2 3 27 27 H 1.08993 * 109.47758 * 59.99750 * 1 2 3 28 28 H 1.09006 * 109.46563 * 240.00496 * 2 1 3 29 29 H 1.09002 * 109.47674 * 120.00511 * 2 1 3 30 30 H 1.08996 * 109.47602 * 59.99480 * 5 3 2 31 31 H 1.09002 * 109.47142 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47189 * 299.99925 * 5 3 2 33 33 H 0.97000 * 119.99923 * 185.00970 * 15 14 12 34 34 H 1.08998 * 110.01928 * 358.50398 * 20 11 10 35 35 H 1.09000 * 110.48838 * 335.78179 * 21 20 11 36 36 H 1.08998 * 110.48655 * 98.42648 * 21 20 11 37 37 H 1.09005 * 110.75291 * 279.62873 * 22 21 20 38 38 H 1.09001 * 110.76158 * 156.25697 * 22 21 20 39 39 H 1.08996 * 110.49116 * 203.38047 * 23 22 21 40 40 H 1.08998 * 110.59940 * 80.78772 * 23 22 21 41 41 H 1.08997 * 110.02985 * 238.56747 * 24 20 11 42 42 H 1.08999 * 110.02987 * 359.94634 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.4258 0.7874 0.7091 8 7 5.5983 1.0549 0.2451 9 7 5.5074 1.8066 -0.7921 10 6 4.2473 2.0785 -1.0551 11 7 3.7749 2.8594 -2.0932 12 6 3.5996 4.2053 -1.9126 13 1 3.1470 4.8003 -2.6920 14 6 3.9987 4.8040 -0.7256 15 7 4.3868 4.0606 0.2881 16 14 3.9846 6.6653 -0.5674 17 1 2.6624 7.1087 -0.0572 18 1 5.0478 7.0898 0.3784 19 1 4.2324 7.2770 -1.8977 20 6 3.4615 2.2469 -3.3866 21 6 4.2764 2.9284 -4.5052 22 6 3.3054 2.9698 -5.7112 23 6 1.9420 3.2736 -5.0422 24 6 1.9772 2.4664 -3.7280 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0699 1.5874 2.1491 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1251 1.3971 33 1 4.5960 4.4737 1.1404 34 1 3.6843 1.1804 -3.3582 35 1 4.5602 3.9384 -4.2093 36 1 5.1602 2.3382 -4.7471 37 1 3.2799 2.0059 -6.2197 38 1 3.5821 3.7655 -6.4029 39 1 1.1222 2.9353 -5.6758 40 1 1.8465 4.3391 -4.8329 41 1 1.4799 1.5064 -3.8661 42 1 1.4898 3.0278 -2.9309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119651693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:24 Heat of formation + Delta-G solvation = 103.521227 kcal Electronic energy + Delta-G solvation = -23886.353243 eV Core-core repulsion = 20710.497942 eV Total energy + Delta-G solvation = -3175.855301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.175 amu Computer time = 5.04 seconds Orbital eigenvalues (eV) -43.06147 -39.62380 -37.76763 -36.32907 -33.47425 -33.07756 -31.51897 -30.04080 -29.41645 -28.40702 -26.58089 -25.69580 -23.93128 -22.66023 -21.39114 -21.11453 -20.96739 -19.40289 -17.81666 -17.45061 -16.59140 -16.20543 -16.02971 -15.90990 -15.76703 -14.74430 -14.67991 -14.31262 -14.07329 -13.78518 -13.51370 -13.25106 -13.11417 -12.90229 -12.69742 -12.68490 -12.55374 -12.46526 -12.31426 -12.02806 -11.96002 -11.83960 -11.77040 -11.62156 -11.38896 -11.37753 -11.22837 -10.91220 -10.62309 -10.38835 -9.37229 -8.04682 -5.58163 0.80342 1.41723 1.45091 1.51793 1.57119 2.16200 2.38281 3.02901 3.23967 3.60330 3.86033 3.91134 3.94353 4.14181 4.19002 4.34912 4.45298 4.50648 4.64135 4.67160 4.72461 4.79624 4.82755 4.85174 4.93070 4.97175 5.06898 5.07697 5.11986 5.14762 5.21746 5.26043 5.33016 5.37846 5.42541 5.45307 5.55085 5.56289 5.66304 5.86904 6.14907 6.97331 7.59245 7.87069 8.27460 8.97003 Molecular weight = 279.18amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.009761 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.140468 B = 2867.984667 C = 3761.333921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.161 3.839 4 H 0.099 0.901 5 C -0.141 4.141 6 N -0.369 5.369 7 N -0.137 5.137 8 N -0.087 5.087 9 N -0.389 5.389 10 C 0.577 3.423 11 N -0.517 5.517 12 C -0.254 4.254 13 H 0.112 0.888 14 C -0.046 4.046 15 N -0.920 5.920 16 Si 0.980 3.020 17 H -0.279 1.279 18 H -0.310 1.310 19 H -0.263 1.263 20 C 0.168 3.832 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.129 4.129 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.186 -3.891 -8.145 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.057 3.943 4 H 0.117 0.883 5 C -0.199 4.199 6 N -0.172 5.172 7 N -0.125 5.125 8 N -0.083 5.083 9 N -0.248 5.248 10 C 0.215 3.785 11 N -0.239 5.239 12 C -0.382 4.382 13 H 0.130 0.870 14 C -0.242 4.242 15 N -0.565 5.565 16 Si 0.809 3.191 17 H -0.206 1.206 18 H -0.238 1.238 19 H -0.187 1.187 20 C 0.063 3.937 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.168 4.168 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.073 -4.378 -7.307 13.971 hybrid contribution -0.080 1.535 0.628 1.660 sum -11.154 -2.843 -6.679 13.308 Atomic orbital electron populations 1.21742 0.91689 1.03317 1.03015 1.21802 0.98690 0.93213 1.02233 1.21481 0.73547 0.98628 1.00602 0.88298 1.21973 1.02510 0.99971 0.95483 1.52256 1.08534 1.35952 1.20424 1.81826 0.93835 1.20997 1.15878 1.77537 1.16112 1.09794 1.04858 1.74523 1.18283 1.18336 1.13703 1.20615 0.85600 0.86608 0.85674 1.41101 1.73470 1.04052 1.05263 1.19558 1.35381 0.81431 1.01856 0.86998 1.25644 0.99732 1.02424 0.96379 1.69307 1.50379 1.34898 1.01883 0.85043 0.76631 0.79819 0.77648 1.20585 1.23790 1.18716 1.21504 0.95504 0.94688 0.82051 1.22709 0.98092 1.01070 0.95182 1.22413 0.94313 1.02183 0.96051 1.22251 0.97689 0.99720 0.95309 1.22549 0.94959 1.00737 0.98535 0.90572 0.91380 0.91611 0.92581 0.91760 0.93287 0.94263 0.88087 0.93790 0.93066 0.91974 0.92860 0.90400 0.90697 0.89776 0.92266 0.90679 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.67 71.98 0.70 -2.04 16 2 C -0.12 -3.41 5.64 30.59 0.17 -3.24 16 3 C 0.16 5.77 3.24 44.99 0.15 5.92 16 4 H 0.10 3.57 7.62 -2.39 -0.02 3.55 16 5 C -0.14 -4.93 9.27 71.98 0.67 -4.26 16 6 N -0.37 -16.91 3.00 -329.00 -0.99 -17.90 16 7 N -0.14 -6.89 13.83 37.02 0.51 -6.38 16 8 N -0.09 -4.74 13.38 37.02 0.50 -4.25 16 9 N -0.39 -21.73 11.72 -58.67 -0.69 -22.42 16 10 C 0.58 28.93 4.71 260.63 1.23 30.16 16 11 N -0.52 -23.29 2.36 -496.55 -1.17 -24.46 16 12 C -0.25 -12.02 7.77 84.03 0.65 -11.37 16 13 H 0.11 4.91 7.54 -2.91 -0.02 4.88 16 14 C -0.05 -2.34 5.43 84.87 0.46 -1.88 16 15 N -0.92 -51.70 10.12 21.65 0.22 -51.48 16 16 Si 0.98 42.85 29.57 68.60 2.03 44.87 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 20 C 0.17 5.98 3.38 45.72 0.15 6.13 16 21 C -0.13 -4.27 6.40 31.67 0.20 -4.07 16 22 C -0.11 -2.61 6.91 31.88 0.22 -2.39 16 23 C -0.11 -2.58 6.83 31.67 0.22 -2.36 16 24 C -0.13 -3.61 6.21 31.32 0.19 -3.41 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.23 6.56 -2.39 -0.02 1.22 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.64 6.57 -2.39 -0.02 2.63 16 33 H 0.25 14.57 8.32 -92.71 -0.77 13.80 16 34 H 0.05 1.87 7.92 -2.39 -0.02 1.86 16 35 H 0.06 2.33 6.88 -2.39 -0.02 2.31 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.98 7.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.35 337.01 6.41 -58.94 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.99 Total: 15.90 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.01 Total: 7.18 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -1.62 Total: -126.88 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.35 6.41 -58.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119651693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.458 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.05 seconds