Wall clock time and date at job start Fri Apr 10 2020 17:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47438 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00111 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 C 1.50696 * 109.47351 * 293.95574 * 12 2 1 14 14 C 1.35322 * 126.12814 * 94.68352 * 13 12 2 15 15 C 1.39875 * 107.91896 * 179.90760 * 14 13 12 16 16 N 1.30833 * 108.20079 * 0.36701 * 15 14 13 17 17 N 1.34952 * 126.12905 * 275.00413 * 13 12 2 18 18 C 1.46501 * 126.03260 * 359.97438 * 17 13 12 19 19 H 1.08995 * 109.48524 * 15.03064 * 18 17 13 20 20 C 1.53090 * 109.48224 * 255.00003 * 18 17 13 21 21 C 1.53176 * 109.16419 * 182.40760 * 20 18 17 22 22 C 1.53177 * 109.03336 * 56.98746 * 21 20 18 23 23 C 1.53094 * 109.16206 * 303.01597 * 22 21 20 24 24 O 1.42901 * 109.41580 * 57.61000 * 23 22 21 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 29 29 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 30 30 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46995 * 53.95554 * 12 2 1 32 32 H 1.09001 * 109.46848 * 173.95560 * 12 2 1 33 33 H 1.07995 * 126.03591 * 0.04555 * 14 13 12 34 34 H 1.08000 * 125.89678 * 180.14796 * 15 14 13 35 35 H 1.08993 * 109.52460 * 302.32196 * 20 18 17 36 36 H 1.09005 * 109.51651 * 62.50553 * 20 18 17 37 37 H 1.09002 * 109.54188 * 176.84742 * 21 20 18 38 38 H 1.08996 * 109.54690 * 297.12277 * 21 20 18 39 39 H 1.09005 * 109.52753 * 62.92298 * 22 21 20 40 40 H 1.09004 * 109.52476 * 183.05152 * 22 21 20 41 41 H 1.09001 * 109.48142 * 177.58886 * 23 22 21 42 42 H 1.08994 * 109.48116 * 297.62639 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 0.8169 3.2436 3.9921 10 1 2.8251 4.5942 3.8432 11 1 0.7553 5.3876 2.8600 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9730 14 6 0.5591 -2.8417 -1.5055 15 6 0.5992 -4.1840 -1.1143 16 7 1.6586 -4.3604 -0.3671 17 7 2.3298 -3.1353 -0.2631 18 6 3.5657 -2.8904 0.4845 19 1 3.7083 -1.8170 0.6096 20 6 4.7524 -3.4769 -0.2846 21 6 6.0321 -3.2700 0.5314 22 6 5.8560 -3.9159 1.9091 23 6 4.6267 -3.3124 2.5935 24 8 3.4774 -3.5123 1.7681 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 2.9859 4.9182 0.7767 31 1 1.5611 -0.3872 -2.0628 32 1 3.0797 -0.6611 -1.1757 33 1 -0.1971 -2.3827 -2.1251 34 1 -0.1219 -4.9428 -1.3800 35 1 4.5912 -4.5427 -0.4455 36 1 4.8481 -2.9727 -1.2463 37 1 6.8725 -3.7347 0.0156 38 1 6.2203 -2.2030 0.6503 39 1 5.7171 -4.9907 1.7926 40 1 6.7414 -3.7267 2.5160 41 1 4.4714 -3.7988 3.5566 42 1 4.7832 -2.2447 2.7463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138773814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:12 Heat of formation + Delta-G solvation = 35.613533 kcal Electronic energy + Delta-G solvation = -22613.896208 eV Core-core repulsion = 19402.803458 eV Total energy + Delta-G solvation = -3211.092750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.08326 -39.11269 -36.57195 -33.78072 -33.01015 -32.65848 -30.62292 -29.22723 -27.19100 -26.65283 -24.92911 -23.89564 -23.55513 -21.16543 -20.70824 -20.03079 -19.46405 -16.99815 -16.30533 -16.23794 -15.64640 -15.25579 -14.81084 -14.52313 -14.43379 -14.18332 -13.94152 -13.66267 -13.33693 -13.08239 -12.80249 -12.64201 -12.19433 -11.97782 -11.63111 -11.43277 -11.32952 -11.17694 -11.06903 -10.91289 -10.70685 -10.56881 -10.50520 -10.27406 -9.95394 -9.69458 -9.30361 -8.96763 -8.50764 -8.25099 -7.37237 -6.09202 -4.10481 2.07974 2.57646 3.12509 3.27223 3.35091 3.40613 3.81798 4.38355 4.58996 4.67361 4.71545 4.78665 4.89640 4.95822 5.11355 5.21198 5.27287 5.34324 5.44043 5.49229 5.62001 5.66036 5.74026 5.84377 5.85208 5.91603 5.96555 5.99187 6.16194 6.20093 6.30860 6.45629 6.76204 6.91480 6.95435 7.15589 7.24332 7.43032 7.71764 7.95562 8.05025 8.09787 8.43826 8.97577 9.54188 11.01642 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.005480 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.362698 B = 5108.128639 C = 6232.809486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.536 5.536 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.106 3.894 13 C 0.118 3.882 14 C -0.276 4.276 15 C 0.039 3.961 16 N -0.287 5.287 17 N -0.354 5.354 18 C 0.342 3.658 19 H 0.103 0.897 20 C -0.158 4.158 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.067 3.933 24 O -0.376 6.376 25 H 0.051 0.949 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.029 0.971 29 H -0.005 1.005 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -14.240 -2.581 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.261 5.261 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.023 4.023 13 C -0.009 4.009 14 C -0.306 4.306 15 C -0.148 4.148 16 N -0.108 5.108 17 N -0.139 5.139 18 C 0.201 3.799 19 H 0.120 0.880 20 C -0.197 4.197 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.010 4.010 24 O -0.294 6.294 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.195 0.805 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.850 -15.196 -1.349 16.008 hybrid contribution -0.777 1.676 -0.474 1.907 sum 4.073 -13.520 -1.822 14.237 Atomic orbital electron populations 1.22261 0.88127 1.00237 1.00596 1.62157 1.07869 1.17795 1.38297 1.19778 0.95264 0.81113 0.97052 1.21170 1.34844 0.96896 1.01588 0.91749 1.24976 0.95251 0.97286 0.97021 1.69959 1.38416 1.11446 1.33998 0.86450 0.78199 0.79357 0.83496 1.19625 1.20993 1.21035 1.20712 1.00547 0.86296 0.94791 1.21120 0.92770 0.92578 0.94420 1.21203 1.01942 0.94643 1.12766 1.23777 0.96787 0.96882 0.97308 1.77343 1.08786 1.03549 1.21109 1.48385 1.20760 1.06311 1.38410 1.21760 0.80031 0.96926 0.81190 0.87959 1.22476 0.94336 1.03293 0.99556 1.21596 0.96949 1.01764 0.95542 1.22241 0.98991 1.01365 0.96994 1.22626 0.84236 1.00721 0.93407 1.87904 1.40367 1.75668 1.25492 0.93027 0.96774 0.90659 0.95290 0.98748 0.92923 0.92755 0.90430 0.83878 0.80488 0.90123 0.90413 0.90840 0.90987 0.90937 0.90403 0.88269 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.13 60.07 0.55 1.27 16 2 N -0.54 -11.37 4.74 -245.82 -1.17 -12.54 16 3 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 4 C -0.51 -13.90 8.46 -34.44 -0.29 -14.19 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.11 1.89 4.83 -4.97 -0.02 1.86 16 13 C 0.12 2.01 5.68 -82.26 -0.47 1.54 16 14 C -0.28 -4.23 9.67 -40.01 -0.39 -4.62 16 15 C 0.04 0.58 12.03 -17.36 -0.21 0.37 16 16 N -0.29 -5.02 12.50 30.63 0.38 -4.64 16 17 N -0.35 -6.13 3.50 -55.19 -0.19 -6.32 16 18 C 0.34 5.40 3.44 -3.99 -0.01 5.39 16 19 H 0.10 1.72 7.14 -51.93 -0.37 1.35 16 20 C -0.16 -1.99 5.74 -26.59 -0.15 -2.14 16 21 C -0.12 -1.23 6.03 -26.55 -0.16 -1.39 16 22 C -0.16 -1.55 6.14 -26.59 -0.16 -1.72 16 23 C 0.07 0.82 6.84 37.21 0.25 1.07 16 24 O -0.38 -6.19 10.56 -35.23 -0.37 -6.56 16 25 H 0.05 0.95 6.53 -51.93 -0.34 0.61 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 28 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 29 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -31.62 340.47 -8.55 -40.17 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.86 Total: 0.03 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.19 Total: -6.28 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.24 Total: -48.78 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.37 Total: -6.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.62 -8.55 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138773814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.785 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds