Wall clock time and date at job start Fri Apr 10 2020 17:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47438 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00111 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 C 1.50696 * 109.47351 * 293.95574 * 12 2 1 14 14 C 1.35322 * 126.12814 * 94.68352 * 13 12 2 15 15 C 1.39875 * 107.91896 * 179.90760 * 14 13 12 16 16 N 1.30833 * 108.20079 * 0.36701 * 15 14 13 17 17 N 1.34952 * 126.12905 * 275.00413 * 13 12 2 18 18 C 1.46501 * 126.03260 * 359.97438 * 17 13 12 19 19 H 1.08995 * 109.48524 * 15.03064 * 18 17 13 20 20 C 1.53090 * 109.48224 * 255.00003 * 18 17 13 21 21 C 1.53176 * 109.16419 * 182.40760 * 20 18 17 22 22 C 1.53177 * 109.03336 * 56.98746 * 21 20 18 23 23 C 1.53094 * 109.16206 * 303.01597 * 22 21 20 24 24 O 1.42901 * 109.41580 * 57.61000 * 23 22 21 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 29 29 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 30 30 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46995 * 53.95554 * 12 2 1 32 32 H 1.09001 * 109.46848 * 173.95560 * 12 2 1 33 33 H 1.07995 * 126.03591 * 0.04555 * 14 13 12 34 34 H 1.08000 * 125.89678 * 180.14796 * 15 14 13 35 35 H 1.08993 * 109.52460 * 302.32196 * 20 18 17 36 36 H 1.09005 * 109.51651 * 62.50553 * 20 18 17 37 37 H 1.09002 * 109.54188 * 176.84742 * 21 20 18 38 38 H 1.08996 * 109.54690 * 297.12277 * 21 20 18 39 39 H 1.09005 * 109.52753 * 62.92298 * 22 21 20 40 40 H 1.09004 * 109.52476 * 183.05152 * 22 21 20 41 41 H 1.09001 * 109.48142 * 177.58886 * 23 22 21 42 42 H 1.08994 * 109.48116 * 297.62639 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 0.8169 3.2436 3.9921 10 1 2.8251 4.5942 3.8432 11 1 0.7553 5.3876 2.8600 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9730 14 6 0.5591 -2.8417 -1.5055 15 6 0.5992 -4.1840 -1.1143 16 7 1.6586 -4.3604 -0.3671 17 7 2.3298 -3.1353 -0.2631 18 6 3.5657 -2.8904 0.4845 19 1 3.7083 -1.8170 0.6096 20 6 4.7524 -3.4769 -0.2846 21 6 6.0321 -3.2700 0.5314 22 6 5.8560 -3.9159 1.9091 23 6 4.6267 -3.3124 2.5935 24 8 3.4774 -3.5123 1.7681 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 2.9859 4.9182 0.7767 31 1 1.5611 -0.3872 -2.0628 32 1 3.0797 -0.6611 -1.1757 33 1 -0.1971 -2.3827 -2.1251 34 1 -0.1219 -4.9428 -1.3800 35 1 4.5912 -4.5427 -0.4455 36 1 4.8481 -2.9727 -1.2463 37 1 6.8725 -3.7347 0.0156 38 1 6.2203 -2.2030 0.6503 39 1 5.7171 -4.9907 1.7926 40 1 6.7414 -3.7267 2.5160 41 1 4.4714 -3.7988 3.5566 42 1 4.7832 -2.2447 2.7463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138773814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:08 Heat of formation + Delta-G solvation = 14.092274 kcal Electronic energy + Delta-G solvation = -22614.829440 eV Core-core repulsion = 19402.803458 eV Total energy + Delta-G solvation = -3212.025982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.31642 -40.18621 -38.26638 -34.82080 -34.74897 -34.05644 -32.05732 -30.32381 -29.11893 -28.16778 -25.99095 -25.58038 -24.71152 -22.51541 -22.25385 -21.04800 -20.75184 -18.63617 -18.00316 -17.37990 -16.89761 -16.74089 -16.30849 -15.90884 -15.77378 -15.47230 -15.19808 -15.01355 -14.57024 -14.44840 -13.97967 -13.81660 -13.75569 -13.57149 -13.18543 -12.94705 -12.69501 -12.60822 -12.50346 -12.30955 -12.24310 -11.97360 -11.88773 -11.60742 -11.43930 -11.32794 -10.80738 -10.63626 -10.20580 -9.51211 -9.09158 -8.22123 -6.31281 0.81175 1.39587 1.40038 1.41097 1.53963 1.93687 2.39521 2.70385 3.10868 3.35006 3.55249 3.64532 3.65319 3.82255 3.91939 3.99803 4.09735 4.16874 4.39067 4.43827 4.52997 4.57727 4.66072 4.70862 4.77388 4.78280 4.80396 4.91699 5.00859 5.03805 5.05413 5.16667 5.21374 5.27063 5.28526 5.62381 5.77499 5.80838 6.00243 6.22013 6.27817 6.52308 6.82898 6.84066 7.38189 8.88790 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.005480 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.362698 B = 5108.128639 C = 6232.809486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.546 5.546 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.007 3.993 7 N -0.931 5.931 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.112 3.888 13 C 0.099 3.901 14 C -0.270 4.270 15 C 0.045 3.955 16 N -0.316 5.316 17 N -0.364 5.364 18 C 0.337 3.663 19 H 0.082 0.918 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.150 4.150 23 C 0.057 3.943 24 O -0.405 6.405 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.010 0.990 29 H -0.028 1.028 30 H 0.265 0.735 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.216 0.784 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -15.189 -2.339 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.271 5.271 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.571 5.571 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.017 4.017 13 C -0.028 4.028 14 C -0.300 4.300 15 C -0.141 4.141 16 N -0.136 5.136 17 N -0.150 5.150 18 C 0.196 3.804 19 H 0.100 0.900 20 C -0.186 4.186 21 C -0.156 4.156 22 C -0.187 4.187 23 C -0.019 4.019 24 O -0.324 6.324 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.028 0.972 29 H -0.010 1.010 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.182 0.818 34 H 0.232 0.768 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.768 -16.161 -1.108 16.886 hybrid contribution -0.783 1.918 -0.572 2.150 sum 3.984 -14.243 -1.679 14.885 Atomic orbital electron populations 1.22181 0.87202 1.00908 1.00167 1.62019 1.08764 1.15686 1.40605 1.19413 0.93955 0.82925 0.95345 1.21421 1.34866 0.97450 1.02298 0.92468 1.25800 0.95008 0.97912 1.00399 1.70061 1.39247 1.11914 1.35875 0.85414 0.78133 0.78248 0.79309 1.19271 1.20252 1.20293 1.20648 1.00557 0.86627 0.93889 1.21091 0.93895 0.92079 0.95783 1.21531 1.01450 0.94859 1.12139 1.24415 0.96386 0.97537 0.95780 1.77312 1.09956 1.03986 1.22396 1.48583 1.21285 1.06363 1.38731 1.21844 0.80813 0.96055 0.81640 0.90040 1.22399 0.94195 1.02379 0.99655 1.21642 0.96303 1.02028 0.95676 1.22198 0.98665 1.01042 0.96841 1.22903 0.84330 1.00831 0.93841 1.87856 1.42607 1.75812 1.26106 0.91408 0.95854 0.92609 0.97169 1.01027 0.92592 0.91544 0.90441 0.81770 0.76757 0.90866 0.90163 0.88546 0.91133 0.90821 0.87838 0.86837 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.13 127.69 1.17 2.88 16 2 N -0.55 -23.47 4.74 -931.64 -4.42 -27.89 16 3 C 0.21 10.80 4.72 85.56 0.40 11.21 16 4 C -0.52 -29.16 8.46 25.60 0.22 -28.94 16 5 H 0.06 3.22 7.12 -2.91 -0.02 3.20 16 6 C 0.01 0.40 5.46 84.66 0.46 0.87 16 7 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 C 0.11 3.98 4.83 85.55 0.41 4.40 16 13 C 0.10 3.29 5.68 41.40 0.24 3.52 16 14 C -0.27 -7.75 9.67 21.99 0.21 -7.54 16 15 C 0.04 1.24 12.03 85.24 1.03 2.26 16 16 N -0.32 -10.71 12.50 -57.02 -0.71 -11.43 16 17 N -0.36 -12.57 3.50 -428.99 -1.50 -14.07 16 18 C 0.34 10.82 3.44 86.41 0.30 11.12 16 19 H 0.08 2.87 7.14 -2.39 -0.02 2.86 16 20 C -0.15 -3.67 5.74 30.68 0.18 -3.49 16 21 C -0.12 -2.26 6.03 30.71 0.19 -2.07 16 22 C -0.15 -2.71 6.14 30.68 0.19 -2.52 16 23 C 0.06 1.37 6.84 72.01 0.49 1.87 16 24 O -0.41 -13.47 10.56 -148.98 -1.57 -15.05 16 25 H 0.07 2.43 6.53 -2.39 -0.02 2.41 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 2.39 6.76 -2.38 -0.02 2.37 16 28 H 0.01 0.56 7.93 -2.39 -0.02 0.54 16 29 H -0.03 -1.54 8.12 -2.39 -0.02 -1.56 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 32 H 0.08 2.70 7.42 -2.39 -0.02 2.68 16 33 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.22 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.13 340.47 0.56 -67.57 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.98 Total: 15.69 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.47 Total: -6.45 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -6.35 Total: -107.58 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.57 Total: -15.05 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.13 0.56 -67.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138773814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.663 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds