Wall clock time and date at job start Fri Apr 10 2020 17:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47085 * 184.16124 * 3 2 1 5 5 N 1.46905 * 109.46970 * 177.44279 * 4 3 2 6 6 C 1.46902 * 110.99828 * 199.08583 * 5 4 3 7 7 C 1.50706 * 109.46937 * 66.04879 * 6 5 4 8 8 H 1.07998 * 120.00005 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99475 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00605 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99528 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47415 * 59.99363 * 11 9 7 13 13 H 1.48501 * 109.47114 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46864 * 299.99406 * 11 9 7 15 15 C 1.46894 * 111.00148 * 75.13147 * 5 4 3 16 16 C 1.50705 * 109.47449 * 196.89426 * 15 5 4 17 17 C 1.38218 * 119.98969 * 254.79204 * 16 15 5 18 18 C 1.38433 * 119.97437 * 180.26990 * 17 16 15 19 19 F 1.35102 * 120.02583 * 179.76459 * 18 17 16 20 20 C 1.38483 * 119.94935 * 359.74983 * 18 17 16 21 21 C 1.38181 * 119.97274 * 359.97438 * 20 18 17 22 22 C 1.38221 * 119.98475 * 74.55747 * 16 15 5 23 23 C 1.50700 * 119.97465 * 0.02562 * 22 16 15 24 24 H 1.08994 * 109.47624 * 300.00683 * 1 2 3 25 25 H 1.09004 * 109.47058 * 60.00800 * 1 2 3 26 26 H 1.09005 * 109.47006 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47405 * 239.99372 * 2 1 3 28 28 H 1.09010 * 109.46726 * 119.99481 * 2 1 3 29 29 H 1.08993 * 109.47666 * 64.15408 * 3 2 1 30 30 H 1.09000 * 109.46792 * 304.15683 * 3 2 1 31 31 H 1.08996 * 109.47643 * 57.44217 * 4 3 2 32 32 H 1.08999 * 109.46889 * 297.43994 * 4 3 2 33 33 H 1.09001 * 109.46901 * 186.04121 * 6 5 4 34 34 H 1.08994 * 109.47120 * 306.04628 * 6 5 4 35 35 H 0.97002 * 120.00308 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47335 * 76.89540 * 15 5 4 37 37 H 1.09005 * 109.47572 * 316.89576 * 15 5 4 38 38 H 1.08001 * 120.00868 * 0.04628 * 17 16 15 39 39 H 1.07997 * 120.01353 * 179.97438 * 20 18 17 40 40 H 1.08001 * 119.98702 * 179.97438 * 21 20 18 41 41 H 1.09005 * 109.47380 * 275.56798 * 23 22 16 42 42 H 1.08999 * 109.47225 * 155.57003 * 23 22 16 43 43 H 1.09001 * 109.47096 * 35.56937 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5664 1.4437 -0.1047 5 7 4.0519 2.8288 -0.1663 6 6 5.4152 2.8851 -0.7106 7 6 5.3991 2.4463 -2.1522 8 1 4.4692 2.1545 -2.6175 9 6 6.5717 2.4166 -2.8768 10 7 7.7041 2.7715 -2.3102 11 14 6.5518 1.8720 -4.6636 12 1 5.6692 2.7739 -5.4462 13 1 7.9300 1.9290 -5.2138 14 1 6.0405 0.4806 -4.7513 15 6 3.9852 3.4693 1.1539 16 6 4.0844 4.9644 0.9927 17 6 5.2572 5.6183 1.3203 18 6 5.3461 6.9924 1.1773 19 9 6.4904 7.6332 1.5018 20 6 4.2614 7.7096 0.7012 21 6 3.0918 7.0529 0.3689 22 6 3.0041 5.6806 0.5125 23 6 1.7275 4.9659 0.1512 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7388 1.9344 0.9248 30 1 1.6171 1.9773 -0.8504 31 1 3.8693 0.9121 -1.0067 32 1 3.9908 0.9485 0.7687 33 1 5.7903 3.9065 -0.6459 34 1 6.0632 2.2229 -0.1364 35 1 8.5291 2.7509 -2.8201 36 1 4.8104 3.1150 1.7717 37 1 3.0388 3.2175 1.6327 38 1 6.1027 5.0579 1.6911 39 1 4.3294 8.7816 0.5896 40 1 2.2455 7.6121 -0.0021 41 1 1.8022 4.5804 -0.8657 42 1 0.8909 5.6615 0.2155 43 1 1.5661 4.1386 0.8424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140593196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:14 Heat of formation + Delta-G solvation = -57.420792 kcal Electronic energy + Delta-G solvation = -22209.149777 eV Core-core repulsion = 18974.102794 eV Total energy + Delta-G solvation = -3235.046983 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -49.86816 -40.58793 -38.42685 -35.60517 -34.65807 -33.29480 -32.56706 -30.10386 -29.00116 -27.34131 -26.23513 -24.55561 -23.29844 -22.48837 -21.74813 -21.18392 -18.57191 -18.21960 -17.48469 -16.72907 -16.63245 -16.40588 -16.26049 -16.04895 -15.46925 -15.23753 -14.66668 -14.55194 -14.31901 -14.18525 -13.80843 -13.59156 -13.57133 -13.19639 -13.06094 -12.77640 -12.66274 -12.62915 -12.49880 -12.26517 -12.09095 -12.01635 -11.82258 -11.73617 -11.40552 -11.26691 -11.15946 -10.60050 -9.86109 -9.32630 -8.98844 -8.19343 -6.28601 0.25796 0.31102 1.38943 1.42150 1.49712 2.39218 2.61564 3.13504 3.27573 3.44577 3.78261 3.87176 4.08334 4.11610 4.20902 4.26098 4.33337 4.42054 4.47431 4.58115 4.61316 4.84837 4.86662 4.87245 4.98406 5.04483 5.07005 5.08372 5.09589 5.18143 5.21988 5.25147 5.31258 5.37367 5.42976 5.48521 5.54629 5.61757 5.66125 5.76133 6.04360 6.08941 6.38376 6.64256 6.88421 7.40601 8.91573 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.007333 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.292515 B = 3817.492993 C = 6001.276773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.099 4.099 4 C 0.060 3.940 5 N -0.523 5.523 6 C 0.212 3.788 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.000 4.000 10 N -0.937 5.937 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.092 3.908 16 C -0.055 4.055 17 C -0.160 4.160 18 C 0.062 3.938 19 F -0.155 7.155 20 C -0.152 4.152 21 C -0.094 4.094 22 C -0.075 4.075 23 C -0.101 4.101 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.017 0.983 33 H 0.004 0.996 34 H -0.048 1.048 35 H 0.262 0.738 36 H 0.018 0.982 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 3.160 7.035 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.137 4.137 4 C -0.068 4.068 5 N -0.246 5.246 6 C 0.085 3.915 7 C -0.554 4.554 8 H 0.083 0.917 9 C -0.198 4.198 10 N -0.577 5.577 11 Si 0.789 3.211 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.190 1.190 15 C -0.035 4.035 16 C -0.056 4.056 17 C -0.180 4.180 18 C 0.043 3.957 19 F -0.134 7.134 20 C -0.170 4.170 21 C -0.111 4.111 22 C -0.075 4.075 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.022 0.978 34 H -0.030 1.030 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.386 3.441 6.700 17.131 hybrid contribution 2.124 -0.614 -0.181 2.219 sum -13.262 2.826 6.520 15.046 Atomic orbital electron populations 1.21712 0.94367 1.01948 1.02144 1.21495 0.96941 0.96139 1.01611 1.21545 0.92749 0.97098 1.02282 1.22098 0.96430 0.88627 0.99641 1.62059 1.24394 1.17041 1.21152 1.19332 0.84100 0.94204 0.93854 1.21426 0.93774 1.43498 0.96737 0.91661 1.25899 0.95065 0.95685 1.03123 1.70095 0.99247 1.49730 1.38657 0.85509 0.77038 0.79225 0.79323 1.19299 1.21195 1.19018 1.21082 1.01438 0.89949 0.91078 1.19615 0.92669 0.95643 0.97642 1.21091 0.99127 0.93252 1.04524 1.17894 0.83420 0.90681 1.03675 1.91430 1.49044 1.81990 1.90898 1.21361 0.92388 1.01653 1.01646 1.21272 0.97921 0.93516 0.98410 1.20133 0.96605 0.93985 0.96811 1.20777 0.92485 1.00230 1.02186 0.92011 0.92720 0.92203 0.93000 0.92092 0.91210 0.91672 0.92322 0.96463 0.97756 1.03021 0.92929 0.96329 0.87488 0.87069 0.82591 0.81566 0.91432 0.89559 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.83 5.93 30.59 0.18 -2.65 16 3 C -0.10 -2.64 5.21 30.59 0.16 -2.48 16 4 C 0.06 2.18 4.80 86.30 0.41 2.60 16 5 N -0.52 -21.53 4.23 -905.35 -3.83 -25.35 16 6 C 0.21 11.33 4.56 85.56 0.39 11.72 16 7 C -0.52 -29.29 8.24 25.60 0.21 -29.07 16 8 H 0.07 3.59 7.30 -2.91 -0.02 3.57 16 9 C 0.00 0.00 5.46 84.66 0.46 0.46 16 10 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 11 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 C 0.09 3.23 4.25 85.56 0.36 3.59 16 16 C -0.06 -1.93 4.71 -19.87 -0.09 -2.02 16 17 C -0.16 -6.07 8.92 22.31 0.20 -5.87 16 18 C 0.06 2.18 7.30 22.37 0.16 2.34 16 19 F -0.15 -5.60 17.27 44.97 0.78 -4.83 16 20 C -0.15 -4.25 10.03 22.31 0.22 -4.03 16 21 C -0.09 -2.37 9.67 22.26 0.22 -2.15 16 22 C -0.07 -2.18 5.88 -19.86 -0.12 -2.30 16 23 C -0.10 -2.34 9.39 71.24 0.67 -1.67 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.62 6.12 -2.39 -0.01 1.61 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.47 6.58 -2.39 -0.02 2.45 16 32 H 0.02 0.62 8.01 -2.39 -0.02 0.60 16 33 H 0.00 0.26 6.72 -2.39 -0.02 0.24 16 34 H -0.05 -2.84 8.12 -2.39 -0.02 -2.86 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 37 H 0.11 3.02 5.13 -2.38 -0.01 3.01 16 38 H 0.11 4.44 8.00 -2.91 -0.02 4.42 16 39 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 43 H 0.07 1.59 5.73 -2.39 -0.01 1.57 16 Total: -1.00 -66.95 348.94 4.39 -62.56 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.97 Total: 11.73 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.16 Total: -33.42 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.54 Total: -82.97 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.78 Total: -4.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.95 4.39 -62.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140593196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.136 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds