Wall clock time and date at job start Fri Apr 10 2020 17:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 N 1.46903 * 109.47343 * 185.20679 * 3 2 1 5 5 C 1.46893 * 111.00187 * 163.38750 * 4 3 2 6 6 C 1.50709 * 109.47156 * 293.95822 * 5 4 3 7 7 H 1.07998 * 120.00061 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99848 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00211 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00174 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47027 * 59.99573 * 10 8 6 12 12 H 1.48491 * 109.47370 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46843 * 300.00220 * 10 8 6 14 14 C 1.46899 * 111.00248 * 287.34610 * 4 3 2 15 15 C 1.50700 * 109.47287 * 163.87444 * 14 4 3 16 16 C 1.38251 * 119.97009 * 275.96418 * 15 14 4 17 17 C 1.38197 * 120.02037 * 179.72854 * 16 15 14 18 18 C 1.50700 * 120.00937 * 180.25385 * 17 16 15 19 19 C 1.38453 * 119.97490 * 0.52439 * 17 16 15 20 20 F 1.35100 * 120.02774 * 179.73008 * 19 17 16 21 21 C 1.38462 * 119.95192 * 359.74692 * 19 17 16 22 22 C 1.50699 * 120.01650 * 179.97438 * 21 19 17 23 23 C 1.38195 * 119.97200 * 0.02562 * 21 19 17 24 24 H 1.09004 * 109.46782 * 60.00106 * 1 2 3 25 25 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47526 * 300.00127 * 1 2 3 27 27 H 1.09000 * 109.47327 * 239.99440 * 2 1 3 28 28 H 1.09004 * 109.46782 * 119.99893 * 2 1 3 29 29 H 1.09000 * 109.47066 * 65.20946 * 3 2 1 30 30 H 1.09003 * 109.47126 * 305.20809 * 3 2 1 31 31 H 1.09000 * 109.47292 * 53.95607 * 5 4 3 32 32 H 1.08998 * 109.47334 * 173.95589 * 5 4 3 33 33 H 0.97004 * 120.00237 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46767 * 283.87492 * 14 4 3 35 35 H 1.08999 * 109.46687 * 43.86798 * 14 4 3 36 36 H 1.08004 * 119.98654 * 359.97438 * 16 15 14 37 37 H 1.09002 * 109.47072 * 270.26515 * 18 17 16 38 38 H 1.08997 * 109.47064 * 30.27142 * 18 17 16 39 39 H 1.09008 * 109.47086 * 150.27032 * 18 17 16 40 40 H 1.09004 * 109.46967 * 270.02608 * 22 21 19 41 41 H 1.09005 * 109.47273 * 30.02261 * 22 21 19 42 42 H 1.08995 * 109.47515 * 150.02403 * 22 21 19 43 43 H 1.08001 * 119.99090 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5036 1.4444 -0.1257 5 6 3.9963 2.7704 -0.5214 6 6 3.5164 3.0897 -1.9139 7 1 2.9067 2.3784 -2.4513 8 6 3.8565 4.2893 -2.5022 9 7 4.5993 5.1553 -1.8480 10 14 3.2623 4.6848 -4.2284 11 1 1.7775 4.6810 -4.2539 12 1 3.7603 6.0254 -4.6284 13 1 3.7762 3.6625 -5.1751 14 6 4.1397 0.9968 1.1205 15 6 5.5764 0.6323 0.8485 16 6 5.8910 -0.6257 0.3692 17 6 7.2076 -0.9591 0.1141 18 6 7.5496 -2.3286 -0.4138 19 6 8.2128 -0.0365 0.3490 20 9 9.5008 -0.3632 0.1051 21 6 7.8971 1.2213 0.8343 22 6 8.9901 2.2265 1.0911 23 6 6.5793 1.5541 1.0843 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.7548 1.9286 0.9330 30 1 1.6025 1.9825 -0.8397 31 1 3.6191 3.5205 0.1737 32 1 5.0861 2.7735 -0.5031 33 1 4.8383 5.9995 -2.2617 34 1 4.1016 1.7998 1.8566 35 1 3.6103 0.1253 1.5059 36 1 5.1070 -1.3468 0.1904 37 1 7.7263 -3.0063 0.4215 38 1 6.7222 -2.7027 -1.0166 39 1 8.4480 -2.2673 -1.0281 40 1 9.3478 2.1207 2.1153 41 1 9.8139 2.0523 0.3988 42 1 8.5994 3.2334 0.9449 43 1 6.3328 2.5349 1.4632 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143381467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:32 Heat of formation + Delta-G solvation = -42.817447 kcal Electronic energy + Delta-G solvation = -22092.001645 eV Core-core repulsion = 18857.587910 eV Total energy + Delta-G solvation = -3234.413734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 6.65 seconds Orbital eigenvalues (eV) -48.60931 -39.23226 -36.92811 -33.47727 -33.20228 -32.67638 -31.08584 -27.71090 -27.08696 -26.46707 -25.76474 -23.93333 -21.44789 -20.92016 -20.70910 -19.44544 -17.16033 -16.60479 -16.23240 -15.49658 -15.21153 -14.59918 -14.57364 -14.00077 -13.70246 -13.61435 -13.26521 -13.13514 -13.02019 -12.93154 -12.76642 -12.57682 -12.14826 -12.00840 -11.90248 -11.53977 -11.39321 -11.20468 -11.05662 -10.80934 -10.73778 -10.68712 -10.59231 -10.29980 -10.02933 -9.71902 -9.18375 -8.43899 -8.31987 -8.08434 -7.25455 -6.01639 -4.01988 1.50886 1.57366 3.33607 3.37840 3.40819 3.85156 4.44109 4.57458 4.90862 4.94498 4.95712 5.18005 5.34177 5.40939 5.47688 5.53356 5.54450 5.60279 5.67140 5.74127 5.77976 5.80925 5.86361 5.98895 6.00708 6.06580 6.13607 6.23993 6.25285 6.40277 6.42661 6.48362 6.54913 6.65079 6.70975 6.82261 6.96662 7.26185 7.33817 7.34747 7.80953 8.10966 8.21416 8.55256 9.04817 9.61590 11.09221 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.006033 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.699945 B = 4640.269701 C = 6044.481286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.061 3.939 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.089 3.911 15 C -0.059 4.059 16 C -0.078 4.078 17 C -0.122 4.122 18 C -0.108 4.108 19 C 0.082 3.918 20 F -0.145 7.145 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.082 4.082 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.018 0.982 30 H 0.087 0.913 31 H -0.012 1.012 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 -11.099 7.236 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.067 4.067 4 N -0.255 5.255 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.039 4.039 15 C -0.060 4.060 16 C -0.097 4.097 17 C -0.123 4.123 18 C -0.165 4.165 19 C 0.063 3.937 20 F -0.124 7.124 21 C -0.116 4.116 22 C -0.168 4.168 23 C -0.100 4.100 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.006 0.994 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.565 -11.243 6.832 13.404 hybrid contribution -0.243 0.980 -0.451 1.106 sum 2.322 -10.263 6.381 12.306 Atomic orbital electron populations 1.21727 0.96519 1.00783 1.01646 1.21562 0.94575 0.97960 1.01677 1.22045 0.88848 0.95297 1.00472 1.62145 1.04278 1.31625 1.27490 1.19790 0.96393 0.81836 0.95414 1.21113 1.31985 1.01564 0.99802 0.91995 1.24956 0.95340 0.96288 0.97888 1.69939 1.37361 1.08824 1.37636 0.86608 0.78995 0.77364 0.84736 1.20310 1.21379 1.20206 1.21026 0.90727 0.99393 0.92706 1.19835 0.95458 0.93251 0.97460 1.20664 0.94345 0.96560 0.98098 1.19798 0.93021 0.96507 1.03000 1.20658 1.02408 0.92679 1.00767 1.17289 0.78046 0.94212 1.04187 1.91404 1.35537 1.92994 1.92433 1.19817 0.96093 0.93805 1.01935 1.20690 0.96450 0.97943 1.01717 1.20865 0.90739 0.99307 0.99101 0.92650 0.93339 0.93271 0.91408 0.93105 0.96414 0.89479 0.99412 0.94468 0.92946 0.94844 0.90996 0.85415 0.91394 0.91074 0.91602 0.91355 0.91559 0.90674 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.15 0.37 -1.53 16 2 C -0.12 -1.79 5.92 -26.74 -0.16 -1.95 16 3 C 0.06 1.15 4.81 -3.82 -0.02 1.13 16 4 N -0.53 -11.04 4.39 -237.52 -1.04 -12.08 16 5 C 0.19 4.85 4.56 -4.98 -0.02 4.83 16 6 C -0.51 -14.07 8.27 -34.44 -0.28 -14.36 16 7 H 0.06 1.71 7.27 -52.49 -0.38 1.33 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.09 1.56 4.95 -4.98 -0.02 1.54 16 15 C -0.06 -1.03 4.92 -104.62 -0.51 -1.54 16 16 C -0.08 -1.24 9.38 -39.59 -0.37 -1.61 16 17 C -0.12 -1.89 5.89 -104.56 -0.62 -2.50 16 18 C -0.11 -1.32 9.83 36.01 0.35 -0.97 16 19 C 0.08 1.35 7.18 -39.42 -0.28 1.06 16 20 F -0.14 -2.31 15.69 2.25 0.04 -2.27 16 21 C -0.12 -1.92 5.89 -104.56 -0.62 -2.53 16 22 C -0.11 -1.57 9.84 36.01 0.35 -1.21 16 23 C -0.08 -1.43 7.97 -39.60 -0.32 -1.74 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.70 6.76 -51.93 -0.35 0.35 16 29 H 0.02 0.32 8.04 -51.93 -0.42 -0.10 16 30 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 32 H 0.04 1.01 6.20 -51.93 -0.32 0.69 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.03 0.59 7.95 -51.93 -0.41 0.18 16 35 H 0.07 1.09 6.39 -51.93 -0.33 0.75 16 36 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.06 0.80 7.64 -51.92 -0.40 0.40 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.90 7.64 -51.93 -0.40 0.51 16 42 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 43 H 0.13 2.24 8.05 -52.49 -0.42 1.82 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -29.65 351.03 -9.38 -39.02 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.13 Total: -1.02 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.24 Total: -19.90 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.31 Total: -37.81 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.65 -9.38 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143381467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.794 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.65 seconds