Wall clock time and date at job start Fri Apr 10 2020 17:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 N 1.46903 * 109.47343 * 185.20679 * 3 2 1 5 5 C 1.46893 * 111.00187 * 163.38750 * 4 3 2 6 6 C 1.50709 * 109.47156 * 293.95822 * 5 4 3 7 7 H 1.07998 * 120.00061 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99848 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00211 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00174 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47027 * 59.99573 * 10 8 6 12 12 H 1.48491 * 109.47370 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46843 * 300.00220 * 10 8 6 14 14 C 1.46899 * 111.00248 * 287.34610 * 4 3 2 15 15 C 1.50700 * 109.47287 * 163.87444 * 14 4 3 16 16 C 1.38251 * 119.97009 * 275.96418 * 15 14 4 17 17 C 1.38197 * 120.02037 * 179.72854 * 16 15 14 18 18 C 1.50700 * 120.00937 * 180.25385 * 17 16 15 19 19 C 1.38453 * 119.97490 * 0.52439 * 17 16 15 20 20 F 1.35100 * 120.02774 * 179.73008 * 19 17 16 21 21 C 1.38462 * 119.95192 * 359.74692 * 19 17 16 22 22 C 1.50699 * 120.01650 * 179.97438 * 21 19 17 23 23 C 1.38195 * 119.97200 * 0.02562 * 21 19 17 24 24 H 1.09004 * 109.46782 * 60.00106 * 1 2 3 25 25 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47526 * 300.00127 * 1 2 3 27 27 H 1.09000 * 109.47327 * 239.99440 * 2 1 3 28 28 H 1.09004 * 109.46782 * 119.99893 * 2 1 3 29 29 H 1.09000 * 109.47066 * 65.20946 * 3 2 1 30 30 H 1.09003 * 109.47126 * 305.20809 * 3 2 1 31 31 H 1.09000 * 109.47292 * 53.95607 * 5 4 3 32 32 H 1.08998 * 109.47334 * 173.95589 * 5 4 3 33 33 H 0.97004 * 120.00237 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46767 * 283.87492 * 14 4 3 35 35 H 1.08999 * 109.46687 * 43.86798 * 14 4 3 36 36 H 1.08004 * 119.98654 * 359.97438 * 16 15 14 37 37 H 1.09002 * 109.47072 * 270.26515 * 18 17 16 38 38 H 1.08997 * 109.47064 * 30.27142 * 18 17 16 39 39 H 1.09008 * 109.47086 * 150.27032 * 18 17 16 40 40 H 1.09004 * 109.46967 * 270.02608 * 22 21 19 41 41 H 1.09005 * 109.47273 * 30.02261 * 22 21 19 42 42 H 1.08995 * 109.47515 * 150.02403 * 22 21 19 43 43 H 1.08001 * 119.99090 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5036 1.4444 -0.1257 5 6 3.9963 2.7704 -0.5214 6 6 3.5164 3.0897 -1.9139 7 1 2.9067 2.3784 -2.4513 8 6 3.8565 4.2893 -2.5022 9 7 4.5993 5.1553 -1.8480 10 14 3.2623 4.6848 -4.2284 11 1 1.7775 4.6810 -4.2539 12 1 3.7603 6.0254 -4.6284 13 1 3.7762 3.6625 -5.1751 14 6 4.1397 0.9968 1.1205 15 6 5.5764 0.6323 0.8485 16 6 5.8910 -0.6257 0.3692 17 6 7.2076 -0.9591 0.1141 18 6 7.5496 -2.3286 -0.4138 19 6 8.2128 -0.0365 0.3490 20 9 9.5008 -0.3632 0.1051 21 6 7.8971 1.2213 0.8343 22 6 8.9901 2.2265 1.0911 23 6 6.5793 1.5541 1.0843 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.7548 1.9286 0.9330 30 1 1.6025 1.9825 -0.8397 31 1 3.6191 3.5205 0.1737 32 1 5.0861 2.7735 -0.5031 33 1 4.8383 5.9995 -2.2617 34 1 4.1016 1.7998 1.8566 35 1 3.6103 0.1253 1.5059 36 1 5.1070 -1.3468 0.1904 37 1 7.7263 -3.0063 0.4215 38 1 6.7222 -2.7027 -1.0166 39 1 8.4480 -2.2673 -1.0281 40 1 9.3478 2.1207 2.1153 41 1 9.8139 2.0523 0.3988 42 1 8.5994 3.2334 0.9449 43 1 6.3328 2.5349 1.4632 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143381467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:25 Heat of formation + Delta-G solvation = -57.898160 kcal Electronic energy + Delta-G solvation = -22092.655594 eV Core-core repulsion = 18857.587910 eV Total energy + Delta-G solvation = -3235.067683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -49.86943 -40.54587 -38.47201 -34.94888 -34.62624 -34.27341 -32.53981 -29.39622 -28.43265 -27.68830 -27.08879 -25.69783 -23.07987 -22.14760 -22.01792 -20.92667 -18.57041 -18.41367 -17.67584 -16.82360 -16.75628 -16.34093 -16.13482 -15.31477 -15.22638 -14.88875 -14.53990 -14.38894 -14.32184 -14.06476 -13.97693 -13.92950 -13.67756 -13.51641 -13.24103 -12.91962 -12.82110 -12.62885 -12.61359 -12.44367 -12.27176 -12.12755 -11.94167 -11.83807 -11.55241 -11.34089 -11.14407 -10.58364 -9.57980 -9.39798 -8.97003 -8.18562 -6.26920 0.20488 0.31005 1.39263 1.42039 1.49576 2.39605 2.55842 3.14296 3.31937 3.44449 3.72396 3.77443 3.85956 4.15289 4.23841 4.29755 4.36584 4.44940 4.50540 4.58230 4.64403 4.67054 4.68749 4.78534 4.79660 4.89373 4.97540 5.00675 5.02231 5.21978 5.23496 5.24632 5.25789 5.32580 5.33017 5.39708 5.47719 5.55106 5.63965 5.69567 6.01852 6.10206 6.40326 6.66722 6.89104 7.41668 8.91991 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.006033 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.699945 B = 4640.269701 C = 6044.481286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.061 3.939 4 N -0.535 5.535 5 C 0.209 3.791 6 C -0.520 4.520 7 H 0.060 0.940 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.092 3.908 15 C -0.074 4.074 16 C -0.081 4.081 17 C -0.121 4.121 18 C -0.107 4.107 19 C 0.068 3.932 20 F -0.143 7.143 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.103 4.103 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.058 0.942 31 H -0.044 1.044 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.026 0.974 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -13.284 6.840 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.067 4.067 4 N -0.259 5.259 5 C 0.082 3.918 6 C -0.559 4.559 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.035 4.035 15 C -0.075 4.075 16 C -0.099 4.099 17 C -0.122 4.122 18 C -0.163 4.163 19 C 0.048 3.952 20 F -0.122 7.122 21 C -0.127 4.127 22 C -0.166 4.166 23 C -0.121 4.121 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.076 0.924 31 H -0.027 1.027 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.913 -13.449 6.446 15.036 hybrid contribution -0.016 1.637 -0.270 1.659 sum 1.897 -11.812 6.176 13.463 Atomic orbital electron populations 1.21701 0.94655 1.02335 1.01600 1.21472 0.96098 0.94833 1.02268 1.22091 0.87436 0.97930 0.99233 1.62086 1.05678 1.28408 1.29711 1.19388 0.94829 0.83568 0.93989 1.21438 1.31847 1.01751 1.00841 0.92163 1.25829 0.95421 0.96166 1.02029 1.70071 1.38509 1.09243 1.39428 0.85558 0.78959 0.77202 0.79665 1.19143 1.20925 1.19635 1.21089 0.91216 1.00148 0.91041 1.19941 0.95123 0.94109 0.98297 1.20896 0.95220 0.96222 0.97565 1.20200 0.92530 0.97763 1.01660 1.20745 1.02933 0.91006 1.01653 1.17471 0.78520 0.94499 1.04681 1.91403 1.35367 1.92942 1.92446 1.20072 0.96279 0.94653 1.01648 1.20724 0.95831 0.96923 1.03158 1.20879 0.91636 0.99122 1.00488 0.93500 0.90940 0.92618 0.92048 0.91144 0.96292 0.92371 1.02680 0.96724 0.92873 0.95599 0.87861 0.83226 0.89243 0.89626 0.91635 0.89181 0.91174 0.91415 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.11 -3.03 5.92 30.59 0.18 -2.84 16 3 C 0.06 2.27 4.81 86.30 0.42 2.68 16 4 N -0.54 -22.42 4.39 -905.36 -3.98 -26.40 16 5 C 0.21 11.04 4.56 85.56 0.39 11.43 16 6 C -0.52 -29.62 8.27 25.60 0.21 -29.41 16 7 H 0.06 3.37 7.27 -2.91 -0.02 3.35 16 8 C 0.00 0.20 5.46 84.65 0.46 0.67 16 9 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 10 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 14 C 0.09 3.20 4.95 85.56 0.42 3.63 16 15 C -0.07 -2.56 4.92 -19.86 -0.10 -2.66 16 16 C -0.08 -2.43 9.38 22.26 0.21 -2.22 16 17 C -0.12 -3.52 5.89 -19.82 -0.12 -3.63 16 18 C -0.11 -2.30 9.83 71.24 0.70 -1.60 16 19 C 0.07 2.17 7.18 22.37 0.16 2.33 16 20 F -0.14 -4.40 15.69 44.97 0.71 -3.69 16 21 C -0.13 -4.22 5.89 -19.82 -0.12 -4.33 16 22 C -0.11 -3.12 9.84 71.24 0.70 -2.42 16 23 C -0.10 -3.71 7.97 22.26 0.18 -3.53 16 24 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.69 6.76 -2.38 -0.02 1.68 16 29 H 0.02 0.69 8.04 -2.39 -0.02 0.67 16 30 H 0.06 2.48 6.58 -2.39 -0.02 2.47 16 31 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 32 H 0.01 0.84 6.20 -2.39 -0.01 0.82 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.03 0.93 7.95 -2.38 -0.02 0.91 16 35 H 0.10 2.89 6.39 -2.39 -0.02 2.88 16 36 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 39 H 0.06 1.43 7.64 -2.38 -0.02 1.41 16 40 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.07 1.91 7.64 -2.38 -0.02 1.89 16 42 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 43 H 0.12 4.35 8.05 -2.91 -0.02 4.33 16 Total: -1.00 -64.93 351.03 4.43 -60.50 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.97 Total: 13.43 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 4.41 Total: -34.55 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -3.69 Total: -82.52 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.71 Total: -3.69 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.93 4.43 -60.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143381467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.602 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds