Wall clock time and date at job start Fri Apr 10 2020 17:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 C 1.53000 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47420 * 180.02562 * 4 3 2 6 6 C 1.37012 * 119.99899 * 270.00308 * 5 4 3 7 7 H 1.08003 * 120.00022 * 42.57577 * 6 5 4 8 8 C 1.38868 * 119.99831 * 222.57349 * 6 5 4 9 9 N 1.31514 * 119.99823 * 13.86007 * 8 6 5 10 10 Si 1.86797 * 119.99794 * 193.86193 * 8 6 5 11 11 H 1.48505 * 109.47129 * 90.00274 * 10 8 6 12 12 H 1.48495 * 109.47073 * 209.99957 * 10 8 6 13 13 H 1.48498 * 109.47242 * 329.99907 * 10 8 6 14 14 C 1.38140 * 120.00189 * 89.99807 * 5 4 3 15 15 N 1.33145 * 120.04829 * 186.10850 * 14 5 4 16 16 C 1.32117 * 120.08905 * 179.97438 * 15 14 5 17 17 C 1.50699 * 119.91184 * 179.97438 * 16 15 14 18 18 N 1.32181 * 120.17751 * 0.02562 * 16 15 14 19 19 C 1.33104 * 120.08991 * 359.97438 * 18 16 15 20 20 N 1.38004 * 120.04098 * 179.97438 * 19 18 16 21 21 C 1.46495 * 120.00139 * 356.09703 * 20 19 18 22 22 C 1.46499 * 119.99694 * 176.10035 * 20 19 18 23 23 N 1.32858 * 119.91357 * 0.02562 * 19 18 16 24 24 H 1.08997 * 109.46777 * 60.00054 * 1 2 3 25 25 H 1.09007 * 109.46792 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46767 * 299.99756 * 1 2 3 27 27 H 1.09001 * 109.47218 * 240.00004 * 2 1 3 28 28 H 1.09004 * 109.47318 * 120.00261 * 2 1 3 29 29 H 1.09001 * 109.46996 * 59.99868 * 3 2 1 30 30 H 1.08996 * 109.47401 * 300.00204 * 3 2 1 31 31 H 1.09001 * 109.47218 * 60.00004 * 4 3 2 32 32 H 1.09004 * 109.47318 * 300.00261 * 4 3 2 33 33 H 0.96997 * 119.99749 * 184.93853 * 9 8 6 34 34 H 1.08990 * 109.47361 * 90.00190 * 17 16 15 35 35 H 1.09006 * 109.47121 * 210.00611 * 17 16 15 36 36 H 1.09005 * 109.47148 * 330.00090 * 17 16 15 37 37 H 1.08999 * 109.47019 * 60.00298 * 21 20 19 38 38 H 1.09004 * 109.47135 * 179.97438 * 21 20 19 39 39 H 1.08989 * 109.47259 * 300.00029 * 21 20 19 40 40 H 1.09003 * 109.47730 * 94.34885 * 22 20 19 41 41 H 1.09003 * 109.47089 * 214.35171 * 22 20 19 42 42 H 1.09001 * 109.47385 * 334.34999 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2872 3.4698 -1.1850 7 1 3.5821 3.3732 -1.9974 8 6 5.4258 4.2490 -1.3428 9 7 6.4113 4.1563 -0.4769 10 14 5.5575 5.4289 -2.7850 11 1 5.0082 6.7520 -2.3939 12 1 6.9831 5.5798 -3.1725 13 1 4.7861 4.8929 -3.9351 14 6 4.2881 3.4745 1.1979 15 7 4.6145 4.7653 1.2027 16 6 4.8339 5.3887 2.3467 17 6 5.2036 6.8496 2.3475 18 7 4.7310 4.7342 3.4905 19 6 4.4051 3.4437 3.4939 20 7 4.2985 2.7612 4.6886 21 6 4.6268 3.4335 5.9481 22 6 3.8569 1.3644 4.6973 23 7 4.1837 2.8132 2.3456 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 7.1748 4.7506 -0.5456 34 1 4.2980 7.4536 2.4014 35 1 5.8352 7.0641 3.2097 36 1 5.7453 7.0879 1.4321 37 1 3.9754 4.2975 6.0793 38 1 4.4831 2.7412 6.7777 39 1 5.6657 3.7621 5.9244 40 1 4.7272 0.7080 4.6879 41 1 3.2686 1.1749 5.5951 42 1 3.2464 1.1707 3.8153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:50 Heat of formation + Delta-G solvation = 84.347072 kcal Electronic energy + Delta-G solvation = -22866.336100 eV Core-core repulsion = 19689.649345 eV Total energy + Delta-G solvation = -3176.686754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.175 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.99676 -37.01310 -36.06720 -34.31894 -32.74466 -31.44406 -31.02093 -28.67100 -27.94403 -27.37586 -25.47423 -24.49731 -23.17257 -20.93232 -20.69837 -20.25625 -17.90859 -17.21673 -15.89791 -15.19084 -15.01429 -14.83701 -14.41327 -14.03220 -13.86694 -13.51539 -13.37640 -12.73952 -12.59181 -12.44345 -12.28178 -12.21601 -11.97981 -11.86221 -11.64214 -11.54357 -11.41185 -11.38172 -10.95762 -10.73691 -10.65586 -10.59809 -10.30064 -9.94654 -9.83377 -9.40002 -8.77607 -8.08056 -7.75400 -7.47356 -6.89320 -6.12567 -3.92167 2.58342 2.91191 3.30128 3.33826 3.35953 3.40867 4.16013 4.60247 5.08583 5.19907 5.29057 5.31761 5.36257 5.46044 5.54867 5.61611 5.73594 5.80753 5.85435 5.99338 6.05042 6.08384 6.14637 6.17858 6.20029 6.23468 6.29533 6.30601 6.38607 6.45013 6.54088 6.57052 6.81020 6.97233 7.26420 7.34032 7.52916 7.92175 8.05306 8.46701 8.54332 8.95051 9.30635 9.65571 10.23570 10.87484 Molecular weight = 279.18amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.008909 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.538131 B = 3142.225475 C = 5280.473458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.129 3.871 5 N -0.400 5.400 6 C -0.331 4.331 7 H 0.085 0.915 8 C 0.075 3.925 9 N -0.830 5.830 10 Si 0.915 3.085 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.597 3.403 15 N -0.562 5.562 16 C 0.388 3.612 17 C -0.070 4.070 18 N -0.673 5.673 19 C 0.607 3.393 20 N -0.603 5.603 21 C 0.122 3.878 22 C 0.113 3.887 23 N -0.672 5.672 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -3.562 6.567 9.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.005 3.995 5 N -0.099 5.099 6 C -0.460 4.460 7 H 0.102 0.898 8 C -0.136 4.136 9 N -0.462 5.462 10 Si 0.742 3.258 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.239 3.761 15 N -0.294 5.294 16 C 0.109 3.891 17 C -0.129 4.129 18 N -0.414 5.414 19 C 0.242 3.758 20 N -0.325 5.325 21 C -0.022 4.022 22 C -0.031 4.031 23 N -0.415 5.415 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.336 -3.800 6.353 9.126 hybrid contribution 0.313 0.605 -0.550 0.876 sum -5.023 -3.195 5.803 8.313 Atomic orbital electron populations 1.21753 0.96457 1.00804 1.01610 1.21439 0.95242 0.97389 1.01644 1.21948 0.97184 0.95718 1.01859 1.21390 0.92427 0.84126 1.01558 1.41707 1.58386 1.08759 1.01031 1.19094 1.05115 1.31689 0.90074 0.89774 1.25190 0.93449 0.97722 0.97262 1.69857 1.06401 1.34029 1.35960 0.86156 0.77045 0.81469 0.81136 1.20061 1.21350 1.19853 1.19022 0.87727 0.84544 0.84775 1.68496 1.22719 1.09875 1.28271 1.22673 0.87297 0.96047 0.83131 1.20311 1.01476 0.88315 1.02791 1.68123 1.33017 1.08364 1.31902 1.18707 0.86231 0.85487 0.85369 1.45444 1.72814 1.11627 1.02613 1.21310 1.00636 0.96751 0.83521 1.21428 0.98902 0.80631 1.02118 1.67755 1.35899 1.40318 0.97498 0.92980 0.93294 0.93052 0.92250 0.92197 0.92494 0.92240 0.91582 0.91240 0.92411 0.90977 0.90967 0.90412 0.92837 0.91914 0.93043 0.94094 0.92734 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.84 16 3 C -0.13 -2.30 5.54 -26.73 -0.15 -2.45 16 4 C 0.13 2.74 5.45 -4.04 -0.02 2.72 16 5 N -0.40 -10.33 2.60 -116.86 -0.30 -10.63 16 6 C -0.33 -8.87 9.22 -15.00 -0.14 -9.00 16 7 H 0.08 2.17 7.87 -52.48 -0.41 1.75 16 8 C 0.07 2.01 4.45 -17.45 -0.08 1.94 16 9 N -0.83 -23.67 11.32 55.49 0.63 -23.04 16 10 Si 0.92 20.91 29.58 -169.99 -5.03 15.89 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 C 0.60 15.98 7.28 -321.86 -2.34 13.64 16 15 N -0.56 -15.13 7.28 -11.47 -0.08 -15.21 16 16 C 0.39 9.34 7.69 -156.58 -1.20 8.13 16 17 C -0.07 -1.32 10.37 36.01 0.37 -0.95 16 18 N -0.67 -15.73 9.64 -11.52 -0.11 -15.84 16 19 C 0.61 14.02 8.18 -322.13 -2.64 11.38 16 20 N -0.60 -11.08 3.36 -191.75 -0.64 -11.72 16 21 C 0.12 1.77 10.18 59.84 0.61 2.38 16 22 C 0.11 1.70 10.42 59.85 0.62 2.32 16 23 N -0.67 -16.60 7.95 -14.70 -0.12 -16.72 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 32 H 0.07 1.49 7.29 -51.93 -0.38 1.11 16 33 H 0.27 7.30 8.32 -40.82 -0.34 6.96 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.68 7.85 -51.93 -0.41 0.28 16 39 H 0.05 0.78 8.14 -51.94 -0.42 0.36 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.63 8.01 -51.93 -0.42 0.22 16 42 H 0.08 1.32 7.29 -51.93 -0.38 0.94 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -32.35 348.19 -12.21 -44.56 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.04 Total: 0.66 kcal Atomic # 6 Polarization: 31.56 SS G_CDS: -4.75 Total: 26.81 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -0.63 Total: -93.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.35 -12.21 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.908 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds