Wall clock time and date at job start Fri Apr 10 2020 17:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 C 1.53000 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47420 * 180.02562 * 4 3 2 6 6 C 1.37012 * 119.99899 * 270.00308 * 5 4 3 7 7 H 1.08003 * 120.00022 * 42.57577 * 6 5 4 8 8 C 1.38868 * 119.99831 * 222.57349 * 6 5 4 9 9 N 1.31514 * 119.99823 * 13.86007 * 8 6 5 10 10 Si 1.86797 * 119.99794 * 193.86193 * 8 6 5 11 11 H 1.48505 * 109.47129 * 90.00274 * 10 8 6 12 12 H 1.48495 * 109.47073 * 209.99957 * 10 8 6 13 13 H 1.48498 * 109.47242 * 329.99907 * 10 8 6 14 14 C 1.38140 * 120.00189 * 89.99807 * 5 4 3 15 15 N 1.33145 * 120.04829 * 186.10850 * 14 5 4 16 16 C 1.32117 * 120.08905 * 179.97438 * 15 14 5 17 17 C 1.50699 * 119.91184 * 179.97438 * 16 15 14 18 18 N 1.32181 * 120.17751 * 0.02562 * 16 15 14 19 19 C 1.33104 * 120.08991 * 359.97438 * 18 16 15 20 20 N 1.38004 * 120.04098 * 179.97438 * 19 18 16 21 21 C 1.46495 * 120.00139 * 356.09703 * 20 19 18 22 22 C 1.46499 * 119.99694 * 176.10035 * 20 19 18 23 23 N 1.32858 * 119.91357 * 0.02562 * 19 18 16 24 24 H 1.08997 * 109.46777 * 60.00054 * 1 2 3 25 25 H 1.09007 * 109.46792 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46767 * 299.99756 * 1 2 3 27 27 H 1.09001 * 109.47218 * 240.00004 * 2 1 3 28 28 H 1.09004 * 109.47318 * 120.00261 * 2 1 3 29 29 H 1.09001 * 109.46996 * 59.99868 * 3 2 1 30 30 H 1.08996 * 109.47401 * 300.00204 * 3 2 1 31 31 H 1.09001 * 109.47218 * 60.00004 * 4 3 2 32 32 H 1.09004 * 109.47318 * 300.00261 * 4 3 2 33 33 H 0.96997 * 119.99749 * 184.93853 * 9 8 6 34 34 H 1.08990 * 109.47361 * 90.00190 * 17 16 15 35 35 H 1.09006 * 109.47121 * 210.00611 * 17 16 15 36 36 H 1.09005 * 109.47148 * 330.00090 * 17 16 15 37 37 H 1.08999 * 109.47019 * 60.00298 * 21 20 19 38 38 H 1.09004 * 109.47135 * 179.97438 * 21 20 19 39 39 H 1.08989 * 109.47259 * 300.00029 * 21 20 19 40 40 H 1.09003 * 109.47730 * 94.34885 * 22 20 19 41 41 H 1.09003 * 109.47089 * 214.35171 * 22 20 19 42 42 H 1.09001 * 109.47385 * 334.34999 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2872 3.4698 -1.1850 7 1 3.5821 3.3732 -1.9974 8 6 5.4258 4.2490 -1.3428 9 7 6.4113 4.1563 -0.4769 10 14 5.5575 5.4289 -2.7850 11 1 5.0082 6.7520 -2.3939 12 1 6.9831 5.5798 -3.1725 13 1 4.7861 4.8929 -3.9351 14 6 4.2881 3.4745 1.1979 15 7 4.6145 4.7653 1.2027 16 6 4.8339 5.3887 2.3467 17 6 5.2036 6.8496 2.3475 18 7 4.7310 4.7342 3.4905 19 6 4.4051 3.4437 3.4939 20 7 4.2985 2.7612 4.6886 21 6 4.6268 3.4335 5.9481 22 6 3.8569 1.3644 4.6973 23 7 4.1837 2.8132 2.3456 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 7.1748 4.7506 -0.5456 34 1 4.2980 7.4536 2.4014 35 1 5.8352 7.0641 3.2097 36 1 5.7453 7.0879 1.4321 37 1 3.9754 4.2975 6.0793 38 1 4.4831 2.7412 6.7777 39 1 5.6657 3.7621 5.9244 40 1 4.7272 0.7080 4.6879 41 1 3.2686 1.1749 5.5951 42 1 3.2464 1.1707 3.8153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:49 Heat of formation + Delta-G solvation = 70.354660 kcal Electronic energy + Delta-G solvation = -22866.942856 eV Core-core repulsion = 19689.649345 eV Total energy + Delta-G solvation = -3177.293511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.175 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79381 -38.72052 -37.60061 -35.77249 -34.56016 -33.26589 -32.74548 -30.23625 -29.46609 -28.70524 -27.15140 -26.20055 -24.71852 -22.47147 -22.29106 -21.84006 -19.74770 -18.99751 -17.57930 -16.98332 -16.54492 -16.44563 -16.04683 -15.50415 -15.38487 -15.06689 -14.84500 -14.41313 -14.28717 -13.93085 -13.75318 -13.43658 -13.38143 -13.25449 -13.16207 -13.03807 -12.92706 -12.79798 -12.71792 -12.29744 -12.15368 -11.98556 -11.87894 -11.58649 -11.41177 -11.16116 -10.73534 -9.92396 -9.64952 -9.07464 -8.78002 -8.11447 -5.97747 0.75090 1.07067 1.45903 1.52484 1.56260 1.92381 2.33505 2.76971 3.21002 3.47289 3.62735 3.97968 4.01921 4.08839 4.25491 4.34509 4.45000 4.48372 4.56583 4.60433 4.73129 4.79261 4.84450 4.84758 4.87391 4.91700 4.98319 4.98598 4.99961 5.05158 5.14109 5.31739 5.39939 5.46600 5.50536 5.62263 5.91925 6.05728 6.27218 6.60778 6.74569 7.01620 7.41186 7.69195 8.35674 8.86428 Molecular weight = 279.18amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.008909 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.538131 B = 3142.225475 C = 5280.473458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.111 4.111 4 C 0.130 3.870 5 N -0.418 5.418 6 C -0.347 4.347 7 H 0.087 0.913 8 C 0.034 3.966 9 N -0.865 5.865 10 Si 0.978 3.022 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.580 3.420 15 N -0.597 5.597 16 C 0.370 3.630 17 C -0.062 4.062 18 N -0.674 5.674 19 C 0.587 3.413 20 N -0.600 5.600 21 C 0.119 3.881 22 C 0.110 3.890 23 N -0.681 5.681 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.261 0.739 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -4.050 7.502 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.150 4.150 4 C 0.007 3.993 5 N -0.118 5.118 6 C -0.475 4.475 7 H 0.105 0.895 8 C -0.173 4.173 9 N -0.499 5.499 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.184 1.184 14 C 0.221 3.779 15 N -0.331 5.331 16 C 0.091 3.909 17 C -0.121 4.121 18 N -0.414 5.414 19 C 0.222 3.778 20 N -0.321 5.321 21 C -0.023 4.023 22 C -0.032 4.032 23 N -0.425 5.425 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.252 -4.322 7.344 10.569 hybrid contribution 0.567 0.699 -0.686 1.132 sum -5.685 -3.624 6.658 9.475 Atomic orbital electron populations 1.21720 0.94736 1.02316 1.01464 1.21402 0.96658 0.94448 1.02499 1.21775 0.94768 0.98243 1.00245 1.21506 0.94363 0.82314 1.01162 1.42013 1.58992 1.10055 1.00733 1.19358 1.05211 1.32350 0.90626 0.89546 1.25971 0.92923 0.98950 0.99482 1.69990 1.06922 1.34868 1.38112 0.85185 0.76979 0.79035 0.78520 1.20364 1.21236 1.18365 1.19388 0.87772 0.85114 0.85661 1.68517 1.24427 1.10376 1.29733 1.23627 0.86434 0.97942 0.82869 1.20391 1.02744 0.85595 1.03347 1.68256 1.33194 1.08571 1.31396 1.19363 0.85922 0.85947 0.86590 1.45923 1.71401 1.12664 1.02077 1.21538 0.99953 0.97827 0.83022 1.21618 0.99394 0.78916 1.03292 1.67818 1.36821 1.40240 0.97600 0.92961 0.90924 0.93427 0.91134 0.91595 0.94604 0.93177 0.91362 0.91988 0.92971 0.88729 0.88797 0.91142 0.93034 0.87395 0.93932 0.93459 0.88344 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.58 16 2 C -0.11 -3.03 5.93 30.59 0.18 -2.84 16 3 C -0.11 -4.05 5.54 30.59 0.17 -3.88 16 4 C 0.13 5.65 5.45 86.38 0.47 6.12 16 5 N -0.42 -22.22 2.60 -523.64 -1.36 -23.58 16 6 C -0.35 -18.99 9.22 84.03 0.78 -18.22 16 7 H 0.09 4.53 7.87 -2.91 -0.02 4.51 16 8 C 0.03 1.87 4.45 84.89 0.38 2.25 16 9 N -0.87 -50.66 11.32 21.66 0.25 -50.41 16 10 Si 0.98 43.51 29.58 68.60 2.03 45.54 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 14 C 0.58 31.91 7.28 261.16 1.90 33.81 16 15 N -0.60 -32.95 7.28 -190.21 -1.38 -34.34 16 16 C 0.37 17.99 7.69 138.54 1.07 19.05 16 17 C -0.06 -2.31 10.37 71.24 0.74 -1.57 16 18 N -0.67 -31.46 9.64 -190.35 -1.84 -33.29 16 19 C 0.59 27.15 8.18 261.25 2.14 29.29 16 20 N -0.60 -21.14 3.36 -760.58 -2.56 -23.70 16 21 C 0.12 3.16 10.18 127.77 1.30 4.46 16 22 C 0.11 3.09 10.42 127.77 1.33 4.42 16 23 N -0.68 -34.36 7.95 -200.43 -1.59 -35.95 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.86 8.04 -2.39 -0.02 2.84 16 32 H 0.06 2.74 7.29 -2.38 -0.02 2.72 16 33 H 0.26 14.76 8.32 -92.71 -0.77 13.99 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 36 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.89 7.85 -2.38 -0.02 1.87 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.90 8.01 -2.39 -0.02 1.88 16 42 H 0.06 1.90 7.29 -2.39 -0.02 1.88 16 Total: -1.00 -72.24 348.19 5.69 -66.55 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.98 Total: 18.89 kcal Atomic # 6 Polarization: 59.13 SS G_CDS: 11.16 Total: 70.30 kcal Atomic # 7 Polarization: -192.78 SS G_CDS: -8.49 Total: -201.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.24 5.69 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.906 kcal (2) G-P(sol) polarization free energy of solvation -72.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds