Wall clock time and date at job start Fri Apr 10 2020 17:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 C 1.53005 * 109.46973 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46842 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99690 * 270.27473 * 5 4 3 7 7 H 1.07995 * 120.00273 * 144.51190 * 6 5 4 8 8 C 1.38819 * 120.00057 * 324.50852 * 6 5 4 9 9 N 1.31619 * 119.99715 * 337.44783 * 8 6 5 10 10 Si 1.86793 * 119.99959 * 157.44504 * 8 6 5 11 11 H 1.48501 * 109.47482 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47131 * 120.00373 * 10 8 6 13 13 H 1.48507 * 109.47008 * 239.99932 * 10 8 6 14 14 C 1.46496 * 120.00542 * 90.27424 * 5 4 3 15 15 H 1.08996 * 109.46872 * 357.20492 * 14 5 4 16 16 C 1.52994 * 109.47376 * 237.19790 * 14 5 4 17 17 C 1.53004 * 109.46903 * 117.19839 * 14 5 4 18 18 C 1.50698 * 109.47270 * 297.93550 * 17 14 5 19 19 C 1.38270 * 119.98642 * 90.00338 * 18 17 14 20 20 C 1.38218 * 120.04991 * 180.02562 * 19 18 17 21 21 C 1.38211 * 120.02951 * 0.02570 * 20 19 18 22 22 C 1.38447 * 119.97250 * 359.97214 * 21 20 19 23 23 F 1.35103 * 120.02065 * 179.72616 * 22 21 20 24 24 C 1.38175 * 119.98954 * 270.02236 * 18 17 14 25 25 H 1.09004 * 109.47046 * 300.00007 * 1 2 3 26 26 H 1.08997 * 109.47262 * 59.99647 * 1 2 3 27 27 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47128 * 239.99999 * 2 1 3 29 29 H 1.09001 * 109.47088 * 119.99875 * 2 1 3 30 30 H 1.09003 * 109.46606 * 60.00586 * 3 2 1 31 31 H 1.08997 * 109.47340 * 300.00306 * 3 2 1 32 32 H 1.08994 * 109.47070 * 60.00127 * 4 3 2 33 33 H 1.09001 * 109.47297 * 299.99911 * 4 3 2 34 34 H 0.96999 * 120.00069 * 180.02562 * 9 8 6 35 35 H 1.09011 * 109.46920 * 61.95819 * 16 14 5 36 36 H 1.09003 * 109.47072 * 181.94967 * 16 14 5 37 37 H 1.08998 * 109.47736 * 301.95509 * 16 14 5 38 38 H 1.09007 * 109.46572 * 177.93598 * 17 14 5 39 39 H 1.08997 * 109.47263 * 57.93821 * 17 14 5 40 40 H 1.08000 * 119.97106 * 359.97438 * 19 18 17 41 41 H 1.08005 * 119.98271 * 179.97438 * 20 19 18 42 42 H 1.08009 * 120.01730 * 179.97438 * 21 20 19 43 43 H 1.08007 * 120.01178 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2817 3.4714 -1.1844 7 1 4.0792 4.5289 -1.2686 8 6 4.7684 2.7688 -2.2783 9 7 5.4233 1.6415 -2.0978 10 14 4.4937 3.4232 -4.0061 11 1 3.7347 4.6978 -3.9380 12 1 5.8058 3.6621 -4.6594 13 1 3.7217 2.4295 -4.7949 14 6 4.3077 3.5120 1.2702 15 1 4.0281 2.8604 2.0980 16 6 3.4754 4.7945 1.3269 17 6 5.7931 3.8629 1.3767 18 6 6.6101 2.5966 1.3718 19 6 7.0581 2.0678 0.1754 20 6 7.8070 0.9061 0.1693 21 6 8.1085 0.2714 1.3595 22 6 7.6605 0.7999 2.5581 23 9 7.9500 0.1772 3.7216 24 6 6.9108 1.9641 2.5629 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.7637 1.1507 -2.8621 35 1 2.4157 4.5420 1.2861 36 1 3.6870 5.3242 2.2558 37 1 3.7302 5.4309 0.4795 38 1 5.9722 4.4073 2.3039 39 1 6.0813 4.4845 0.5289 40 1 6.8220 2.5625 -0.7552 41 1 8.1561 0.4938 -0.7659 42 1 8.6934 -0.6366 1.3545 43 1 6.5608 2.3774 3.4974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168498818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:02 Heat of formation + Delta-G solvation = -29.897688 kcal Electronic energy + Delta-G solvation = -22925.140967 eV Core-core repulsion = 19691.287475 eV Total energy + Delta-G solvation = -3233.853492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.72333 -40.04748 -38.19757 -35.78588 -34.39610 -32.55703 -31.31115 -30.89576 -28.95509 -27.21018 -26.08052 -23.55479 -23.36549 -22.36114 -21.66983 -21.14842 -18.23117 -17.77551 -17.13099 -16.85009 -16.64049 -16.41765 -16.08672 -15.77120 -15.28102 -14.94207 -14.61717 -14.27228 -14.15794 -14.08578 -13.63403 -13.42387 -12.99123 -12.95853 -12.85053 -12.74507 -12.64312 -12.40230 -12.32283 -12.15445 -11.93103 -11.76981 -11.69207 -11.47837 -11.43315 -11.12989 -11.10447 -10.27658 -9.61428 -9.23174 -8.31961 -7.61281 -5.20129 0.54855 0.58850 1.48408 1.56970 1.61024 2.61123 2.99566 3.39556 3.47732 3.70091 4.02168 4.11450 4.21109 4.32020 4.36109 4.46306 4.56232 4.66351 4.71238 4.74391 4.80069 4.81992 4.97802 5.00984 5.07618 5.10316 5.12408 5.20108 5.23795 5.26046 5.36299 5.38479 5.47932 5.49568 5.58758 5.65822 5.68644 5.85932 5.96338 6.03519 6.11714 6.38312 6.65160 7.35519 8.05302 8.59061 9.28545 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.007245 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.248690 B = 3863.929285 C = 4586.195293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.154 3.846 5 N -0.582 5.582 6 C -0.239 4.239 7 H 0.052 0.948 8 C -0.023 4.023 9 N -0.886 5.886 10 Si 0.930 3.070 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.302 1.302 14 C 0.169 3.831 15 H 0.050 0.950 16 C -0.144 4.144 17 C -0.081 4.081 18 C -0.053 4.053 19 C -0.068 4.068 20 C -0.098 4.098 21 C -0.168 4.168 22 C 0.060 3.940 23 F -0.154 7.154 24 C -0.162 4.162 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.246 0.754 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.138 0.862 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -0.413 7.075 7.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.160 4.160 4 C 0.028 3.972 5 N -0.302 5.302 6 C -0.370 4.370 7 H 0.070 0.930 8 C -0.221 4.221 9 N -0.530 5.530 10 Si 0.762 3.238 11 H -0.205 1.205 12 H -0.225 1.225 13 H -0.229 1.229 14 C 0.062 3.938 15 H 0.068 0.932 16 C -0.203 4.203 17 C -0.120 4.120 18 C -0.054 4.054 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.186 4.186 22 C 0.041 3.959 23 F -0.132 7.132 24 C -0.181 4.181 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.774 -0.528 7.012 7.074 hybrid contribution -0.030 -0.045 -1.195 1.196 sum -0.804 -0.573 5.817 5.900 Atomic orbital electron populations 1.21711 0.94833 1.01819 1.01594 1.21428 0.96537 0.96717 1.00940 1.22003 0.98677 0.95674 0.99679 1.20794 0.90622 0.86222 0.99545 1.43961 1.74224 1.11306 1.00690 1.18999 1.35441 0.93876 0.88686 0.92997 1.25347 0.98141 0.98706 0.99915 1.70053 1.36472 1.17770 1.28706 0.85806 0.76704 0.77580 0.83721 1.20522 1.22506 1.22919 1.20571 0.91558 0.93377 0.88266 0.93205 1.22018 0.99255 0.98022 1.00957 1.21019 0.96080 0.93402 1.01519 1.19809 0.96293 0.97403 0.91860 1.21693 0.92486 0.95568 0.98939 1.20993 0.98151 0.95500 0.96942 1.21165 1.04077 1.02098 0.91290 1.17674 1.02521 0.94512 0.81211 1.91412 1.92366 1.82247 1.47219 1.21053 1.01630 0.95888 0.99502 0.92435 0.93389 0.91797 0.93583 0.92399 0.93674 0.94557 0.91374 0.97271 0.94395 0.93876 0.91459 0.93772 0.90279 0.92206 0.84426 0.85914 0.84242 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.81 5.93 30.59 0.18 -3.63 16 3 C -0.12 -4.59 5.54 30.60 0.17 -4.42 16 4 C 0.15 6.76 5.26 86.38 0.45 7.21 16 5 N -0.58 -25.28 1.62 -678.05 -1.10 -26.38 16 6 C -0.24 -11.46 7.81 84.03 0.66 -10.81 16 7 H 0.05 2.56 6.70 -2.91 -0.02 2.54 16 8 C -0.02 -1.14 4.47 84.86 0.38 -0.76 16 9 N -0.89 -44.28 8.56 21.65 0.19 -44.09 16 10 Si 0.93 41.84 29.61 68.60 2.03 43.87 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 14 C 0.17 6.26 2.77 44.99 0.12 6.39 16 15 H 0.05 1.82 7.81 -2.39 -0.02 1.81 16 16 C -0.14 -4.70 9.15 71.98 0.66 -4.04 16 17 C -0.08 -2.87 4.77 29.85 0.14 -2.73 16 18 C -0.05 -2.02 4.91 -19.87 -0.10 -2.11 16 19 C -0.07 -2.84 8.18 22.27 0.18 -2.66 16 20 C -0.10 -3.70 10.04 22.26 0.22 -3.48 16 21 C -0.17 -5.76 10.03 22.31 0.22 -5.54 16 22 C 0.06 2.09 7.30 22.38 0.16 2.25 16 23 F -0.15 -5.16 17.27 44.97 0.78 -4.38 16 24 C -0.16 -5.61 9.68 22.31 0.22 -5.39 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 3.43 5.41 -2.39 -0.01 3.42 16 33 H 0.01 0.40 7.94 -2.39 -0.02 0.38 16 34 H 0.25 12.29 8.31 -92.71 -0.77 11.52 16 35 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.55 6.80 -2.39 -0.02 1.54 16 38 H 0.08 2.32 8.09 -2.38 -0.02 2.30 16 39 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 40 H 0.14 6.58 5.15 -2.91 -0.01 6.57 16 41 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -50.27 345.38 7.25 -43.02 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.97 Total: 20.73 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 4.39 Total: -32.76 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.91 Total: -70.47 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -50.27 7.25 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168498818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.123 kcal (2) G-P(sol) polarization free energy of solvation -50.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds