Wall clock time and date at job start Fri Apr 10 2020 17:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 H 1.09004 * 109.47437 * 305.00223 * 3 2 1 5 5 C 1.52998 * 109.47264 * 65.00058 * 3 2 1 6 6 C 1.53006 * 109.47295 * 185.00238 * 3 2 1 7 7 C 1.52996 * 109.47077 * 175.00173 * 6 3 2 8 8 H 1.08999 * 109.47095 * 55.00009 * 7 6 3 9 9 C 1.52999 * 109.46915 * 174.99882 * 7 6 3 10 10 N 1.46498 * 109.47284 * 294.99542 * 7 6 3 11 11 C 1.39882 * 119.99985 * 154.99886 * 10 7 6 12 12 C 1.39099 * 119.96050 * 0.28102 * 11 10 7 13 13 C 1.38626 * 120.46352 * 180.23371 * 12 11 10 14 14 C 1.37574 * 120.38611 * 359.48670 * 13 12 11 15 15 C 1.40787 * 119.91263 * 0.25166 * 14 13 12 16 16 C 1.41319 * 120.23122 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99898 * 154.70172 * 16 15 14 18 18 C 1.39921 * 120.00010 * 334.70430 * 16 15 14 19 19 N 1.30849 * 119.99945 * 342.88027 * 18 16 15 20 20 Si 1.86798 * 119.99984 * 162.88410 * 18 16 15 21 21 H 1.48504 * 109.47446 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47613 * 120.00049 * 20 18 16 23 23 H 1.48504 * 109.46960 * 240.00157 * 20 18 16 24 24 C 1.38590 * 119.96160 * 180.02562 * 11 10 7 25 25 F 1.35101 * 120.18916 * 359.97438 * 24 11 10 26 26 H 1.09001 * 109.47243 * 299.99895 * 1 2 3 27 27 H 1.09002 * 109.47139 * 60.00229 * 1 2 3 28 28 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47258 * 240.00661 * 2 1 3 30 30 H 1.08999 * 109.47696 * 120.00270 * 2 1 3 31 31 H 1.09000 * 109.47314 * 300.00430 * 5 3 2 32 32 H 1.09004 * 109.46758 * 59.99750 * 5 3 2 33 33 H 1.08998 * 109.47574 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47173 * 55.00129 * 6 3 2 35 35 H 1.09002 * 109.46905 * 294.99871 * 6 3 2 36 36 H 1.09000 * 109.47229 * 299.99668 * 9 7 6 37 37 H 1.09003 * 109.47613 * 60.00156 * 9 7 6 38 38 H 1.09006 * 109.47479 * 179.97438 * 9 7 6 39 39 H 0.96997 * 119.99748 * 335.00514 * 10 7 6 40 40 H 1.08000 * 119.76740 * 359.97438 * 12 11 10 41 41 H 1.07998 * 119.80361 * 179.76529 * 13 12 11 42 42 H 1.07998 * 120.04354 * 180.23693 * 14 13 12 43 43 H 0.97002 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0643 2.8851 -0.2511 8 1 3.6969 3.4716 0.5910 9 6 5.5943 2.8961 -0.2515 10 7 3.5716 3.4657 -1.5027 11 6 3.4279 4.8520 -1.6217 12 6 3.7587 5.6790 -0.5532 13 6 3.6158 7.0538 -0.6581 14 6 3.1547 7.6186 -1.8247 15 6 2.8203 6.7971 -2.9181 16 6 2.3466 7.3701 -4.1199 17 1 2.4735 6.8452 -5.0552 18 6 1.7131 8.6175 -4.0981 19 7 1.2586 9.1008 -2.9703 20 14 1.5161 9.5928 -5.6790 21 1 2.1112 8.8323 -6.8073 22 1 0.0728 9.8221 -5.9427 23 1 2.2084 10.8996 -5.5440 24 6 2.9612 5.4004 -2.8058 25 9 2.6446 4.5998 -3.8469 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.5488 2.1252 1.3970 32 1 2.0698 1.5875 2.1491 33 1 1.9988 3.1541 1.3076 34 1 3.8570 0.8802 -1.0114 35 1 4.0029 0.9837 0.7596 36 1 5.9610 2.4642 0.6797 37 1 5.9617 2.3096 -1.0936 38 1 5.9503 3.9225 -0.3412 39 1 3.3449 2.8888 -2.2487 40 1 4.1255 5.2465 0.3660 41 1 3.8723 7.6856 0.1795 42 1 3.0492 8.6906 -1.9017 43 1 0.8197 9.9658 -2.9550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168689017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:22 Heat of formation + Delta-G solvation = -58.959940 kcal Electronic energy + Delta-G solvation = -22129.423977 eV Core-core repulsion = 18894.310251 eV Total energy + Delta-G solvation = -3235.113726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -47.03300 -38.49930 -37.01520 -35.12924 -33.43855 -31.23850 -29.54882 -29.47148 -27.01598 -26.61000 -25.23879 -23.81740 -21.59589 -20.62694 -20.11324 -19.42439 -17.47972 -16.10469 -15.75946 -15.40626 -15.07336 -14.91167 -14.56915 -14.01128 -13.82852 -13.66778 -13.20927 -13.05943 -12.78827 -12.62793 -12.37897 -11.99967 -11.92356 -11.74397 -11.60753 -11.56964 -11.30013 -11.16905 -11.11014 -10.94173 -10.67392 -10.51417 -10.45384 -10.35906 -10.06307 -9.80317 -9.45733 -9.29557 -8.79517 -7.33735 -6.78962 -6.20021 -4.37048 2.74526 3.05281 3.08739 3.15107 3.24615 3.93558 4.20309 4.62682 4.69472 4.91738 4.96286 5.27366 5.34791 5.43610 5.56118 5.61708 5.63468 5.68584 5.76800 5.86674 5.92435 5.96954 5.99271 6.00986 6.09035 6.10133 6.22015 6.25884 6.30285 6.50534 6.53109 6.54842 6.72583 6.95208 7.00896 7.20728 7.33837 7.66543 7.79599 8.06276 8.15631 8.37730 8.55759 8.68181 8.82934 9.00655 10.16651 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.004374 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.346233 B = 6399.390603 C = 6835.078386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.120 4.120 7 C 0.155 3.845 8 H 0.079 0.921 9 C -0.168 4.168 10 N -0.751 5.751 11 C 0.210 3.790 12 C -0.286 4.286 13 C -0.078 4.078 14 C -0.184 4.184 15 C 0.118 3.882 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.788 5.788 20 Si 0.910 3.090 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.098 4.098 25 F -0.168 7.168 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.390 0.610 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -11.081 6.419 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.205 4.205 6 C -0.158 4.158 7 C 0.049 3.951 8 H 0.096 0.904 9 C -0.227 4.227 10 N -0.384 5.384 11 C 0.110 3.890 12 C -0.310 4.310 13 C -0.098 4.098 14 C -0.205 4.205 15 C 0.114 3.886 16 C -0.483 4.483 17 H 0.099 0.901 18 C -0.141 4.141 19 N -0.412 5.412 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.123 4.123 25 F -0.148 7.148 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.224 0.776 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.839 -10.922 6.666 12.927 hybrid contribution -0.294 0.160 -1.065 1.117 sum 1.545 -10.762 5.601 12.230 Atomic orbital electron populations 1.21822 0.96077 1.01080 1.02167 1.21571 0.95853 0.96702 1.01417 1.21155 0.95164 0.95597 0.99221 0.90440 1.21903 1.01124 1.00968 0.96549 1.21916 0.95582 0.96417 1.01879 1.20745 0.92672 0.93130 0.88601 0.90356 1.22307 0.97025 1.02555 1.00777 1.44409 1.75340 1.03700 1.14957 1.17402 0.95816 0.82742 0.93079 1.19754 1.20175 0.93160 0.97878 1.20474 0.98779 0.93633 0.96883 1.20998 1.06404 0.99688 0.93390 1.17410 0.88951 0.88312 0.93912 1.19528 1.32275 1.01784 0.94709 0.90124 1.25897 0.93038 0.97297 0.97835 1.69859 1.26284 1.17554 1.27542 0.86237 0.78644 0.79603 0.82136 1.18311 1.19921 1.19615 1.17295 1.21524 0.88395 0.85061 1.91199 1.92633 1.73401 1.57563 0.92517 0.92636 0.93241 0.92341 0.92415 0.92775 0.93262 0.92040 0.91952 0.91276 0.92892 0.93034 0.91895 0.77645 0.88668 0.89112 0.86167 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.15 0.36 -1.21 16 2 C -0.12 -1.22 5.40 -26.73 -0.14 -1.37 16 3 C -0.09 -1.13 2.33 -90.62 -0.21 -1.34 16 4 H 0.08 1.14 7.62 -51.93 -0.40 0.75 16 5 C -0.15 -1.79 8.71 37.16 0.32 -1.47 16 6 C -0.12 -1.42 4.22 -26.73 -0.11 -1.53 16 7 C 0.15 2.24 2.13 -67.93 -0.14 2.10 16 8 H 0.08 1.21 4.69 -51.93 -0.24 0.96 16 9 C -0.17 -2.28 9.41 37.16 0.35 -1.93 16 10 N -0.75 -13.61 4.62 -52.15 -0.24 -13.86 16 11 C 0.21 4.71 6.64 -83.73 -0.56 4.16 16 12 C -0.29 -6.27 8.85 -39.12 -0.35 -6.62 16 13 C -0.08 -1.82 10.01 -39.68 -0.40 -2.21 16 14 C -0.18 -4.78 8.68 -38.86 -0.34 -5.12 16 15 C 0.12 3.23 5.57 -106.78 -0.59 2.63 16 16 C -0.45 -12.45 8.77 -37.78 -0.33 -12.78 16 17 H 0.08 2.21 7.74 -52.48 -0.41 1.80 16 18 C 0.08 1.98 5.15 -17.34 -0.09 1.89 16 19 N -0.79 -20.37 10.97 55.55 0.61 -19.76 16 20 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 24 C -0.10 -2.54 7.31 -38.47 -0.28 -2.82 16 25 F -0.17 -4.31 16.08 2.25 0.04 -4.27 16 26 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.85 6.46 -51.93 -0.34 0.51 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 39 H 0.39 6.96 8.08 -40.82 -0.33 6.63 16 40 H 0.10 1.85 6.05 -52.49 -0.32 1.54 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.12 3.20 6.19 -52.49 -0.32 2.87 16 43 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -27.54 342.71 -8.77 -36.31 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.80 Total: 10.14 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -2.51 Total: -27.62 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.37 Total: -33.62 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.04 Total: -4.27 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.54 -8.77 -36.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168689017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.647 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds