Wall clock time and date at job start Fri Apr 10 2020 17:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 H 1.09004 * 109.47437 * 305.00223 * 3 2 1 5 5 C 1.52998 * 109.47264 * 65.00058 * 3 2 1 6 6 C 1.53006 * 109.47295 * 185.00238 * 3 2 1 7 7 C 1.52996 * 109.47077 * 175.00173 * 6 3 2 8 8 H 1.08999 * 109.47095 * 55.00009 * 7 6 3 9 9 C 1.52999 * 109.46915 * 174.99882 * 7 6 3 10 10 N 1.46498 * 109.47284 * 294.99542 * 7 6 3 11 11 C 1.39882 * 119.99985 * 154.99886 * 10 7 6 12 12 C 1.39099 * 119.96050 * 0.28102 * 11 10 7 13 13 C 1.38626 * 120.46352 * 180.23371 * 12 11 10 14 14 C 1.37574 * 120.38611 * 359.48670 * 13 12 11 15 15 C 1.40787 * 119.91263 * 0.25166 * 14 13 12 16 16 C 1.41319 * 120.23122 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99898 * 154.70172 * 16 15 14 18 18 C 1.39921 * 120.00010 * 334.70430 * 16 15 14 19 19 N 1.30849 * 119.99945 * 342.88027 * 18 16 15 20 20 Si 1.86798 * 119.99984 * 162.88410 * 18 16 15 21 21 H 1.48504 * 109.47446 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47613 * 120.00049 * 20 18 16 23 23 H 1.48504 * 109.46960 * 240.00157 * 20 18 16 24 24 C 1.38590 * 119.96160 * 180.02562 * 11 10 7 25 25 F 1.35101 * 120.18916 * 359.97438 * 24 11 10 26 26 H 1.09001 * 109.47243 * 299.99895 * 1 2 3 27 27 H 1.09002 * 109.47139 * 60.00229 * 1 2 3 28 28 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47258 * 240.00661 * 2 1 3 30 30 H 1.08999 * 109.47696 * 120.00270 * 2 1 3 31 31 H 1.09000 * 109.47314 * 300.00430 * 5 3 2 32 32 H 1.09004 * 109.46758 * 59.99750 * 5 3 2 33 33 H 1.08998 * 109.47574 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47173 * 55.00129 * 6 3 2 35 35 H 1.09002 * 109.46905 * 294.99871 * 6 3 2 36 36 H 1.09000 * 109.47229 * 299.99668 * 9 7 6 37 37 H 1.09003 * 109.47613 * 60.00156 * 9 7 6 38 38 H 1.09006 * 109.47479 * 179.97438 * 9 7 6 39 39 H 0.96997 * 119.99748 * 335.00514 * 10 7 6 40 40 H 1.08000 * 119.76740 * 359.97438 * 12 11 10 41 41 H 1.07998 * 119.80361 * 179.76529 * 13 12 11 42 42 H 1.07998 * 120.04354 * 180.23693 * 14 13 12 43 43 H 0.97002 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0643 2.8851 -0.2511 8 1 3.6969 3.4716 0.5910 9 6 5.5943 2.8961 -0.2515 10 7 3.5716 3.4657 -1.5027 11 6 3.4279 4.8520 -1.6217 12 6 3.7587 5.6790 -0.5532 13 6 3.6158 7.0538 -0.6581 14 6 3.1547 7.6186 -1.8247 15 6 2.8203 6.7971 -2.9181 16 6 2.3466 7.3701 -4.1199 17 1 2.4735 6.8452 -5.0552 18 6 1.7131 8.6175 -4.0981 19 7 1.2586 9.1008 -2.9703 20 14 1.5161 9.5928 -5.6790 21 1 2.1112 8.8323 -6.8073 22 1 0.0728 9.8221 -5.9427 23 1 2.2084 10.8996 -5.5440 24 6 2.9612 5.4004 -2.8058 25 9 2.6446 4.5998 -3.8469 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.5488 2.1252 1.3970 32 1 2.0698 1.5875 2.1491 33 1 1.9988 3.1541 1.3076 34 1 3.8570 0.8802 -1.0114 35 1 4.0029 0.9837 0.7596 36 1 5.9610 2.4642 0.6797 37 1 5.9617 2.3096 -1.0936 38 1 5.9503 3.9225 -0.3412 39 1 3.3449 2.8888 -2.2487 40 1 4.1255 5.2465 0.3660 41 1 3.8723 7.6856 0.1795 42 1 3.0492 8.6906 -1.9017 43 1 0.8197 9.9658 -2.9550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168689017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:21 Heat of formation + Delta-G solvation = -71.755623 kcal Electronic energy + Delta-G solvation = -22129.978839 eV Core-core repulsion = 18894.310251 eV Total energy + Delta-G solvation = -3235.668588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.03150 -39.91600 -38.51801 -36.54187 -35.15613 -32.65171 -31.42191 -30.51601 -28.61203 -27.73238 -27.13004 -24.79526 -23.18583 -22.47722 -21.34832 -20.58633 -19.30204 -17.94502 -17.49761 -16.99888 -16.57641 -16.06832 -15.91165 -15.72056 -15.48764 -14.97836 -14.76432 -14.44556 -14.13612 -13.88902 -13.67678 -13.44444 -13.29052 -13.07007 -12.93287 -12.85957 -12.72709 -12.70248 -12.55426 -12.18271 -12.14884 -11.91600 -11.72174 -11.47989 -11.38060 -11.27723 -11.09943 -11.07111 -10.49444 -9.28935 -8.68489 -7.93702 -6.39870 0.89739 1.18505 1.36743 1.50894 1.52920 2.20080 2.70990 2.74014 3.65371 3.71485 3.98975 4.01330 4.11472 4.32088 4.35784 4.50063 4.50853 4.53814 4.69251 4.73760 4.83186 4.86961 4.90445 4.95797 4.98891 5.05465 5.09378 5.13752 5.17629 5.22534 5.24848 5.29774 5.30739 5.46590 5.50336 5.58451 5.59678 5.78663 5.95130 6.12379 6.21881 6.52198 6.75894 6.85413 6.94641 7.13201 8.29445 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.004374 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.346233 B = 6399.390603 C = 6835.078386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.092 4.092 4 H 0.044 0.956 5 C -0.146 4.146 6 C -0.111 4.111 7 C 0.149 3.851 8 H 0.074 0.926 9 C -0.163 4.163 10 N -0.743 5.743 11 C 0.221 3.779 12 C -0.281 4.281 13 C -0.073 4.073 14 C -0.213 4.213 15 C 0.089 3.911 16 C -0.496 4.496 17 H 0.065 0.935 18 C 0.040 3.960 19 N -0.815 5.815 20 Si 0.983 3.017 21 H -0.264 1.264 22 H -0.263 1.263 23 H -0.257 1.257 24 C -0.137 4.137 25 F -0.176 7.176 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.390 0.610 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -12.416 7.929 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.111 4.111 4 H 0.062 0.938 5 C -0.204 4.204 6 C -0.149 4.149 7 C 0.044 3.956 8 H 0.092 0.908 9 C -0.222 4.222 10 N -0.374 5.374 11 C 0.118 3.882 12 C -0.304 4.304 13 C -0.092 4.092 14 C -0.234 4.234 15 C 0.086 3.914 16 C -0.526 4.526 17 H 0.083 0.917 18 C -0.176 4.176 19 N -0.440 5.440 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.187 1.187 23 H -0.181 1.181 24 C -0.161 4.161 25 F -0.155 7.155 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.224 0.776 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.544 -12.301 8.208 15.006 hybrid contribution -0.487 0.439 -1.402 1.548 sum 2.057 -11.862 6.806 13.830 Atomic orbital electron populations 1.21831 0.96218 1.01804 1.01414 1.21533 0.95727 0.95374 1.02410 1.21117 0.95471 0.96530 0.97984 0.93753 1.21885 1.01146 1.00029 0.97294 1.21878 0.95138 0.94462 1.03432 1.21039 0.93536 0.94611 0.86382 0.90800 1.22251 0.95747 1.01568 1.02587 1.44609 1.74304 1.01996 1.16460 1.17503 0.93939 0.84898 0.91889 1.20086 1.18988 0.92708 0.98640 1.20815 0.97021 0.94681 0.96639 1.20935 1.08877 0.99014 0.94527 1.17781 0.89552 0.89441 0.94645 1.19670 1.34798 1.03719 0.94365 0.91684 1.26709 0.91938 0.97447 1.01478 1.69884 1.26389 1.18271 1.29464 0.85150 0.79092 0.78105 0.77294 1.18798 1.18710 1.18074 1.17621 1.23770 0.88400 0.86309 1.91157 1.92906 1.73369 1.58088 0.92476 0.94235 0.91780 0.92063 0.90602 0.93003 0.91051 0.94040 0.91417 0.88452 0.89769 0.92830 0.93995 0.77610 0.85575 0.86156 0.87571 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.67 71.98 0.70 -2.23 16 2 C -0.11 -2.06 5.40 30.59 0.17 -1.90 16 3 C -0.09 -2.08 2.33 -10.79 -0.03 -2.11 16 4 H 0.04 1.29 7.62 -2.39 -0.02 1.28 16 5 C -0.15 -3.25 8.71 71.98 0.63 -2.62 16 6 C -0.11 -2.29 4.22 30.59 0.13 -2.16 16 7 C 0.15 3.97 2.13 44.99 0.10 4.07 16 8 H 0.07 2.08 4.69 -2.39 -0.01 2.07 16 9 C -0.16 -3.94 9.41 71.98 0.68 -3.26 16 10 N -0.74 -26.46 4.62 -318.90 -1.47 -27.93 16 11 C 0.22 9.96 6.64 38.15 0.25 10.21 16 12 C -0.28 -12.03 8.85 22.57 0.20 -11.83 16 13 C -0.07 -3.33 10.01 22.21 0.22 -3.11 16 14 C -0.21 -11.40 8.68 22.74 0.20 -11.20 16 15 C 0.09 5.12 5.57 -21.26 -0.12 5.00 16 16 C -0.50 -28.66 8.77 23.44 0.21 -28.45 16 17 H 0.06 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.04 2.10 5.15 85.25 0.44 2.54 16 19 N -0.81 -43.29 10.97 21.82 0.24 -43.05 16 20 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.14 -7.31 7.31 22.99 0.17 -7.14 16 25 F -0.18 -9.40 16.08 44.97 0.72 -8.68 16 26 H 0.06 1.06 6.56 -2.39 -0.02 1.04 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.15 6.56 -2.39 -0.02 1.14 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.08 6.46 -2.39 -0.02 1.06 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.19 7.67 -2.38 -0.02 1.17 16 39 H 0.39 13.90 8.08 -92.71 -0.75 13.16 16 40 H 0.13 4.58 6.05 -2.91 -0.02 4.57 16 41 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.11 5.88 6.19 -2.91 -0.02 5.86 16 43 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 Total: -1.00 -62.50 342.71 5.70 -56.79 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.25 Total: 35.44 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 3.93 Total: -54.20 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.24 Total: -70.98 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 0.72 Total: -8.68 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -62.50 5.70 -56.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168689017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.962 kcal (2) G-P(sol) polarization free energy of solvation -62.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds