Wall clock time and date at job start Fri Apr 10 2020 17:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 H 1.08997 * 109.47187 * 305.00092 * 3 2 1 5 5 C 1.52991 * 109.47199 * 65.00225 * 3 2 1 6 6 C 1.52999 * 109.46845 * 185.00288 * 3 2 1 7 7 C 1.52999 * 109.46844 * 174.99991 * 6 3 2 8 8 H 1.09001 * 109.47473 * 55.00225 * 7 6 3 9 9 C 1.53002 * 109.47135 * 174.99763 * 7 6 3 10 10 N 1.46504 * 109.47308 * 294.99891 * 7 6 3 11 11 C 1.39678 * 119.99743 * 155.00058 * 10 7 6 12 12 C 1.39287 * 119.93992 * 359.72735 * 11 10 7 13 13 C 1.38706 * 120.39715 * 179.76570 * 12 11 10 14 14 F 1.35103 * 119.86572 * 180.27795 * 13 12 11 15 15 C 1.37918 * 120.27472 * 0.50719 * 13 12 11 16 16 C 1.40717 * 119.86835 * 359.74861 * 15 13 12 17 17 C 1.41407 * 120.19787 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99935 * 204.46270 * 17 16 15 19 19 C 1.39926 * 119.99657 * 24.45770 * 17 16 15 20 20 N 1.30829 * 120.00492 * 17.91506 * 19 17 16 21 21 Si 1.86802 * 119.99821 * 197.91014 * 19 17 16 22 22 H 1.48504 * 109.47141 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47143 * 120.00136 * 21 19 17 24 24 H 1.48498 * 109.47172 * 240.00199 * 21 19 17 25 25 C 1.38300 * 119.93437 * 179.97438 * 11 10 7 26 26 H 1.08998 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46620 * 300.00073 * 1 2 3 28 28 H 1.08997 * 109.47118 * 59.99358 * 1 2 3 29 29 H 1.09001 * 109.46620 * 239.99927 * 2 1 3 30 30 H 1.08997 * 109.47118 * 120.00642 * 2 1 3 31 31 H 1.09010 * 109.47434 * 59.99845 * 5 3 2 32 32 H 1.08996 * 109.47592 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47295 * 300.00021 * 5 3 2 34 34 H 1.09000 * 109.47457 * 55.00188 * 6 3 2 35 35 H 1.09005 * 109.47175 * 294.99915 * 6 3 2 36 36 H 1.08998 * 109.47285 * 59.99936 * 9 7 6 37 37 H 1.09005 * 109.47350 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47457 * 299.99854 * 9 7 6 39 39 H 0.96993 * 119.99334 * 334.99743 * 10 7 6 40 40 H 1.08002 * 119.80371 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.06928 * 179.76896 * 15 13 12 42 42 H 0.96994 * 120.00276 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.13606 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4441 -0.1258 7 6 4.0646 2.8847 -0.2512 8 1 3.6974 3.4714 0.5909 9 6 5.5946 2.8956 -0.2515 10 7 3.5718 3.4654 -1.5027 11 6 3.4286 4.8497 -1.6215 12 6 3.7493 5.6765 -0.5474 13 6 3.6152 7.0528 -0.6566 14 9 3.9347 7.8450 0.3901 15 6 3.1527 7.6156 -1.8277 16 6 2.8204 6.7907 -2.9182 17 6 2.3461 7.3603 -4.1224 18 1 1.7349 6.7745 -4.7929 19 6 2.6685 8.6831 -4.4451 20 7 3.6668 9.2784 -3.8445 21 14 1.6737 9.5992 -5.7337 22 1 0.6066 8.7103 -6.2595 23 1 1.0569 10.8025 -5.1197 24 1 2.5662 10.0134 -6.8459 25 6 2.9638 5.3965 -2.8038 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0700 1.5874 2.1492 32 1 1.9992 3.1539 1.3075 33 1 0.5491 2.1252 1.3969 34 1 3.8571 0.8798 -1.0114 35 1 4.0030 0.9833 0.7596 36 1 5.9619 2.3091 -1.0936 37 1 5.9507 3.9220 -0.3413 38 1 5.9613 2.4637 0.6796 39 1 3.3451 2.8885 -2.2487 40 1 4.1084 5.2437 0.3746 41 1 3.0461 8.6873 -1.9078 42 1 3.8906 10.1952 -4.0685 43 1 2.7110 4.7554 -3.6352 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168692745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:41 Heat of formation + Delta-G solvation = -60.998612 kcal Electronic energy + Delta-G solvation = -21862.145330 eV Core-core repulsion = 18626.943201 eV Total energy + Delta-G solvation = -3235.202129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.54258 -38.61205 -37.08465 -35.11572 -33.38517 -31.17391 -29.59587 -29.46649 -27.03696 -26.66043 -25.37463 -23.84948 -21.51231 -20.81730 -20.13674 -19.45456 -17.70716 -16.04831 -15.54123 -15.29378 -15.10177 -14.71256 -14.61944 -14.22079 -14.05619 -14.01156 -13.47221 -13.14633 -12.85739 -12.79865 -12.37403 -12.07217 -11.97567 -11.78372 -11.63835 -11.53230 -11.36785 -11.31229 -11.07284 -10.80702 -10.68617 -10.51759 -10.49228 -10.28184 -10.09168 -9.99085 -9.60180 -9.31144 -8.61869 -7.37925 -6.80063 -6.28510 -4.43580 2.73830 3.03320 3.07991 3.12755 3.25785 3.91279 4.18133 4.58883 4.65877 4.87327 4.92393 5.23879 5.31354 5.40557 5.54182 5.60371 5.60838 5.68214 5.74860 5.79950 5.84160 5.91290 5.95792 6.01922 6.05627 6.06040 6.18667 6.23838 6.41412 6.47745 6.49245 6.57682 6.71640 6.91353 7.02386 7.19395 7.28738 7.59226 7.82076 7.88932 8.12700 8.40860 8.58830 8.65369 8.88555 8.97434 10.15600 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.004263 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.701101 B = 6566.081152 C = 7256.806664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.092 4.092 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.120 4.120 7 C 0.152 3.848 8 H 0.078 0.922 9 C -0.168 4.168 10 N -0.750 5.750 11 C 0.255 3.745 12 C -0.339 4.339 13 C 0.133 3.867 14 F -0.169 7.169 15 C -0.235 4.235 16 C 0.160 3.840 17 C -0.458 4.458 18 H 0.081 0.919 19 C 0.077 3.923 20 N -0.784 5.784 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.300 4.300 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.389 0.611 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.281 0.719 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -12.899 5.474 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.206 4.206 6 C -0.158 4.158 7 C 0.046 3.954 8 H 0.096 0.904 9 C -0.227 4.227 10 N -0.382 5.382 11 C 0.155 3.845 12 C -0.362 4.362 13 C 0.113 3.887 14 F -0.148 7.148 15 C -0.256 4.256 16 C 0.157 3.843 17 C -0.487 4.487 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.409 5.409 21 Si 0.732 3.268 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.200 1.200 25 C -0.324 4.324 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.222 0.778 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.092 0.908 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.690 -12.663 5.707 13.992 hybrid contribution -0.240 0.419 -0.681 0.835 sum -1.930 -12.244 5.026 13.375 Atomic orbital electron populations 1.21821 0.96087 1.01098 1.02122 1.21577 0.95826 0.96729 1.01460 1.21147 0.95178 0.95543 0.99170 0.90440 1.21910 1.01087 1.01027 0.96613 1.21916 0.95528 0.96416 1.01920 1.20774 0.92756 0.93123 0.88789 0.90381 1.22306 0.96983 1.02642 1.00786 1.44495 1.75166 1.03807 1.14748 1.17095 0.92468 0.81931 0.92964 1.19684 1.25188 0.91391 0.99960 1.17416 0.99711 0.87575 0.83951 1.91318 1.91123 1.74774 1.57604 1.21132 1.11834 1.00932 0.91704 1.17061 0.85881 0.89840 0.91527 1.19592 1.28449 0.96429 1.04210 0.90104 1.25957 0.93699 0.97677 0.96874 1.69858 1.21111 1.13146 1.36743 0.86272 0.80579 0.79705 0.80244 1.18312 1.19635 1.19954 1.20413 1.19850 0.95344 0.96778 0.93238 0.92524 0.92668 0.92331 0.92403 0.93245 0.92023 0.92785 0.91921 0.91306 0.92985 0.91872 0.92921 0.77768 0.88341 0.85745 0.90777 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.12 -1.13 5.40 -26.73 -0.14 -1.28 16 3 C -0.09 -1.03 2.33 -90.63 -0.21 -1.24 16 4 H 0.08 1.02 7.62 -51.93 -0.40 0.62 16 5 C -0.15 -1.72 8.71 37.15 0.32 -1.40 16 6 C -0.12 -1.34 4.22 -26.73 -0.11 -1.45 16 7 C 0.15 2.15 2.13 -67.93 -0.14 2.00 16 8 H 0.08 1.21 4.66 -51.93 -0.24 0.97 16 9 C -0.17 -2.32 9.43 37.16 0.35 -1.97 16 10 N -0.75 -12.62 4.62 -52.22 -0.24 -12.87 16 11 C 0.26 5.53 6.62 -83.87 -0.56 4.97 16 12 C -0.34 -7.75 8.84 -39.02 -0.35 -8.09 16 13 C 0.13 3.37 7.28 -39.53 -0.29 3.08 16 14 F -0.17 -4.14 17.26 2.25 0.04 -4.10 16 15 C -0.23 -6.33 8.67 -38.76 -0.34 -6.67 16 16 C 0.16 4.27 5.57 -106.86 -0.60 3.68 16 17 C -0.46 -12.02 9.05 -37.74 -0.34 -12.36 16 18 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 19 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 20 N -0.78 -20.42 10.96 55.55 0.61 -19.81 16 21 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.30 -7.19 9.63 -38.66 -0.37 -7.56 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.83 6.46 -51.93 -0.34 0.49 16 33 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.03 7.73 -51.93 -0.40 0.62 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.39 6.00 8.61 -40.82 -0.35 5.65 16 40 H 0.10 2.08 6.10 -52.49 -0.32 1.76 16 41 H 0.12 3.50 6.15 -52.49 -0.32 3.18 16 42 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 43 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -27.14 344.45 -8.76 -35.90 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.83 Total: 9.74 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -2.50 Total: -27.52 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.37 Total: -32.68 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.14 -8.76 -35.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.096 kcal (2) G-P(sol) polarization free energy of solvation -27.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds