Wall clock time and date at job start Fri Apr 10 2020 17:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 H 1.08997 * 109.47187 * 305.00092 * 3 2 1 5 5 C 1.52991 * 109.47199 * 65.00225 * 3 2 1 6 6 C 1.52999 * 109.46845 * 185.00288 * 3 2 1 7 7 C 1.52999 * 109.46844 * 174.99991 * 6 3 2 8 8 H 1.09001 * 109.47473 * 55.00225 * 7 6 3 9 9 C 1.53002 * 109.47135 * 174.99763 * 7 6 3 10 10 N 1.46504 * 109.47308 * 294.99891 * 7 6 3 11 11 C 1.39678 * 119.99743 * 155.00058 * 10 7 6 12 12 C 1.39287 * 119.93992 * 359.72735 * 11 10 7 13 13 C 1.38706 * 120.39715 * 179.76570 * 12 11 10 14 14 F 1.35103 * 119.86572 * 180.27795 * 13 12 11 15 15 C 1.37918 * 120.27472 * 0.50719 * 13 12 11 16 16 C 1.40717 * 119.86835 * 359.74861 * 15 13 12 17 17 C 1.41407 * 120.19787 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99935 * 204.46270 * 17 16 15 19 19 C 1.39926 * 119.99657 * 24.45770 * 17 16 15 20 20 N 1.30829 * 120.00492 * 17.91506 * 19 17 16 21 21 Si 1.86802 * 119.99821 * 197.91014 * 19 17 16 22 22 H 1.48504 * 109.47141 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47143 * 120.00136 * 21 19 17 24 24 H 1.48498 * 109.47172 * 240.00199 * 21 19 17 25 25 C 1.38300 * 119.93437 * 179.97438 * 11 10 7 26 26 H 1.08998 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46620 * 300.00073 * 1 2 3 28 28 H 1.08997 * 109.47118 * 59.99358 * 1 2 3 29 29 H 1.09001 * 109.46620 * 239.99927 * 2 1 3 30 30 H 1.08997 * 109.47118 * 120.00642 * 2 1 3 31 31 H 1.09010 * 109.47434 * 59.99845 * 5 3 2 32 32 H 1.08996 * 109.47592 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47295 * 300.00021 * 5 3 2 34 34 H 1.09000 * 109.47457 * 55.00188 * 6 3 2 35 35 H 1.09005 * 109.47175 * 294.99915 * 6 3 2 36 36 H 1.08998 * 109.47285 * 59.99936 * 9 7 6 37 37 H 1.09005 * 109.47350 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47457 * 299.99854 * 9 7 6 39 39 H 0.96993 * 119.99334 * 334.99743 * 10 7 6 40 40 H 1.08002 * 119.80371 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.06928 * 179.76896 * 15 13 12 42 42 H 0.96994 * 120.00276 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.13606 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4441 -0.1258 7 6 4.0646 2.8847 -0.2512 8 1 3.6974 3.4714 0.5909 9 6 5.5946 2.8956 -0.2515 10 7 3.5718 3.4654 -1.5027 11 6 3.4286 4.8497 -1.6215 12 6 3.7493 5.6765 -0.5474 13 6 3.6152 7.0528 -0.6566 14 9 3.9347 7.8450 0.3901 15 6 3.1527 7.6156 -1.8277 16 6 2.8204 6.7907 -2.9182 17 6 2.3461 7.3603 -4.1224 18 1 1.7349 6.7745 -4.7929 19 6 2.6685 8.6831 -4.4451 20 7 3.6668 9.2784 -3.8445 21 14 1.6737 9.5992 -5.7337 22 1 0.6066 8.7103 -6.2595 23 1 1.0569 10.8025 -5.1197 24 1 2.5662 10.0134 -6.8459 25 6 2.9638 5.3965 -2.8038 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0700 1.5874 2.1492 32 1 1.9992 3.1539 1.3075 33 1 0.5491 2.1252 1.3969 34 1 3.8571 0.8798 -1.0114 35 1 4.0030 0.9833 0.7596 36 1 5.9619 2.3091 -1.0936 37 1 5.9507 3.9220 -0.3413 38 1 5.9613 2.4637 0.6796 39 1 3.3451 2.8885 -2.2487 40 1 4.1084 5.2437 0.3746 41 1 3.0461 8.6873 -1.9078 42 1 3.8906 10.1952 -4.0685 43 1 2.7110 4.7554 -3.6352 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168692745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:39 Heat of formation + Delta-G solvation = -73.227019 kcal Electronic energy + Delta-G solvation = -21862.675593 eV Core-core repulsion = 18626.943201 eV Total energy + Delta-G solvation = -3235.732393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.53420 -40.04341 -38.51484 -36.50366 -35.06339 -32.58695 -31.44726 -30.49915 -28.65774 -27.73580 -27.24968 -24.77210 -23.10878 -22.66723 -21.33565 -20.55862 -19.53239 -17.89210 -17.12009 -16.75229 -16.54759 -16.22181 -16.12961 -15.93481 -15.67233 -15.41001 -14.72827 -14.49836 -14.10604 -14.02263 -13.68142 -13.46659 -13.26862 -13.06196 -12.94686 -12.86168 -12.73469 -12.56459 -12.43531 -12.19664 -12.15049 -11.93016 -11.81209 -11.48444 -11.40616 -11.29988 -11.11893 -11.04628 -10.36991 -9.33521 -8.67577 -8.00257 -6.42992 0.86748 1.16539 1.39836 1.53788 1.56271 2.20580 2.70258 2.75242 3.68128 3.73716 3.88621 4.02640 4.04411 4.32464 4.36724 4.51771 4.53010 4.61750 4.71324 4.75224 4.80260 4.83259 4.89183 4.96921 4.99363 5.04181 5.09649 5.14490 5.17067 5.25647 5.27095 5.29894 5.32323 5.45871 5.50628 5.59993 5.61987 5.76819 5.85563 5.96862 6.19152 6.54665 6.77253 6.91835 6.97905 7.20370 8.30646 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.004263 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.701101 B = 6566.081152 C = 7256.806664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.091 4.091 4 H 0.054 0.946 5 C -0.148 4.148 6 C -0.110 4.110 7 C 0.147 3.853 8 H 0.066 0.934 9 C -0.164 4.164 10 N -0.736 5.736 11 C 0.271 3.729 12 C -0.337 4.337 13 C 0.123 3.877 14 F -0.168 7.168 15 C -0.267 4.267 16 C 0.137 3.863 17 C -0.490 4.490 18 H 0.084 0.916 19 C 0.035 3.965 20 N -0.820 5.820 21 Si 0.985 3.015 22 H -0.253 1.253 23 H -0.267 1.267 24 H -0.264 1.264 25 C -0.315 4.315 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.398 0.602 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.289 0.711 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -15.172 5.548 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.109 4.109 4 H 0.073 0.927 5 C -0.205 4.205 6 C -0.148 4.148 7 C 0.042 3.958 8 H 0.084 0.916 9 C -0.223 4.223 10 N -0.367 5.367 11 C 0.168 3.832 12 C -0.361 4.361 13 C 0.103 3.897 14 F -0.147 7.147 15 C -0.289 4.289 16 C 0.133 3.867 17 C -0.519 4.519 18 H 0.102 0.898 19 C -0.181 4.181 20 N -0.445 5.445 21 Si 0.805 3.195 22 H -0.177 1.177 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.340 4.340 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.783 -14.991 5.800 16.173 hybrid contribution -0.160 1.007 -0.597 1.181 sum -1.943 -13.984 5.203 15.047 Atomic orbital electron populations 1.21829 0.96135 1.01756 1.01536 1.21533 0.95770 0.95374 1.02389 1.21112 0.95266 0.96530 0.98006 0.92711 1.21898 1.01219 0.99881 0.97549 1.21861 0.95286 0.94088 1.03531 1.21003 0.93230 0.94835 0.86762 0.91572 1.22260 0.96231 1.01168 1.02658 1.44579 1.73879 1.01910 1.16288 1.17080 0.90383 0.84071 0.91658 1.19873 1.24666 0.90481 1.01071 1.17635 0.99777 0.88629 0.83649 1.91305 1.91109 1.74972 1.57354 1.21018 1.14742 1.00074 0.93028 1.17396 0.86372 0.91146 0.91783 1.19884 1.29560 0.97844 1.04611 0.89775 1.26871 0.94233 0.97986 0.98991 1.69924 1.22445 1.13817 1.38283 0.85122 0.78907 0.78112 0.77348 1.17672 1.19139 1.18888 1.20557 1.20638 0.94695 0.98097 0.91969 0.92723 0.93698 0.91687 0.91117 0.91569 0.94351 0.92771 0.90723 0.89070 0.92160 0.94800 0.90226 0.76643 0.86435 0.87927 0.90051 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.67 71.98 0.70 -1.87 16 2 C -0.11 -1.82 5.40 30.59 0.17 -1.66 16 3 C -0.09 -1.83 2.33 -10.80 -0.03 -1.85 16 4 H 0.05 1.36 7.62 -2.39 -0.02 1.34 16 5 C -0.15 -3.16 8.71 71.98 0.63 -2.53 16 6 C -0.11 -2.08 4.22 30.59 0.13 -1.95 16 7 C 0.15 3.82 2.13 44.99 0.10 3.92 16 8 H 0.07 1.94 4.66 -2.39 -0.01 1.92 16 9 C -0.16 -4.12 9.43 71.98 0.68 -3.44 16 10 N -0.74 -23.73 4.62 -319.13 -1.47 -25.21 16 11 C 0.27 11.70 6.62 38.16 0.25 11.96 16 12 C -0.34 -15.49 8.84 22.63 0.20 -15.29 16 13 C 0.12 6.38 7.28 22.31 0.16 6.55 16 14 F -0.17 -8.44 17.26 44.97 0.78 -7.66 16 15 C -0.27 -15.07 8.67 22.80 0.20 -14.87 16 16 C 0.14 7.53 5.57 -21.31 -0.12 7.41 16 17 C -0.49 -26.51 9.05 23.46 0.21 -26.29 16 18 H 0.08 4.32 7.91 -2.91 -0.02 4.30 16 19 C 0.04 1.79 5.14 85.25 0.44 2.23 16 20 N -0.82 -44.09 10.96 21.82 0.24 -43.85 16 21 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 22 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 C -0.32 -15.36 9.63 22.86 0.22 -15.14 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.91 6.57 -2.39 -0.02 0.90 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.04 0.99 6.46 -2.39 -0.02 0.97 16 33 H 0.05 1.13 6.56 -2.39 -0.02 1.12 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 1.04 7.73 -2.38 -0.02 1.02 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.40 11.57 8.61 -92.71 -0.80 10.77 16 40 H 0.12 4.88 6.10 -2.91 -0.02 4.86 16 41 H 0.10 6.13 6.15 -2.91 -0.02 6.11 16 42 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 43 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -60.60 344.45 5.71 -54.89 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.20 Total: 34.36 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 3.93 Total: -52.83 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.23 Total: -69.06 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.78 Total: -7.66 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -60.60 5.71 -54.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.333 kcal (2) G-P(sol) polarization free energy of solvation -60.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds