Wall clock time and date at job start Fri Apr 10 2020 17:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35662 * 116.99971 * 2 1 4 4 C 1.38038 * 120.21711 * 359.97438 * 3 2 1 5 5 C 1.39216 * 119.98466 * 180.02562 * 4 3 2 6 6 N 1.38925 * 119.79774 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99870 * 172.80349 * 6 5 4 8 8 H 1.09004 * 109.46807 * 343.46148 * 7 6 5 9 9 N 1.46894 * 109.47072 * 103.45924 * 7 6 5 10 10 C 1.53002 * 109.46789 * 223.46025 * 7 6 5 11 11 C 1.53000 * 109.46733 * 180.02562 * 10 7 6 12 12 C 1.53001 * 109.47166 * 180.02562 * 11 10 7 13 13 N 1.46900 * 109.47275 * 180.02562 * 12 11 10 14 14 C 1.39712 * 120.40257 * 0.02562 * 5 4 3 15 15 C 1.36234 * 120.43399 * 359.69137 * 14 5 4 16 16 C 1.40860 * 120.00074 * 0.56170 * 15 14 5 17 17 C 1.40963 * 120.19408 * 179.74056 * 16 15 14 18 18 H 1.07998 * 119.99949 * 154.29048 * 17 16 15 19 19 C 1.39846 * 120.00125 * 334.28807 * 17 16 15 20 20 N 1.30945 * 120.00201 * 334.52155 * 19 17 16 21 21 Si 1.86805 * 119.99910 * 154.52535 * 19 17 16 22 22 H 1.48503 * 109.46976 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47068 * 299.99848 * 21 19 17 24 24 H 1.48495 * 109.47176 * 60.00037 * 21 19 17 25 25 H 1.08997 * 109.47035 * 300.00022 * 1 2 3 26 26 H 1.09002 * 109.47573 * 59.99694 * 1 2 3 27 27 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00393 * 0.04455 * 4 3 2 29 29 H 0.97000 * 119.99636 * 352.80115 * 6 5 4 30 30 H 1.00906 * 111.00095 * 60.00033 * 9 7 6 31 31 H 1.00899 * 110.99923 * 183.95008 * 9 7 6 32 32 H 1.08995 * 109.47407 * 299.99768 * 10 7 6 33 33 H 1.09000 * 109.47194 * 60.00076 * 10 7 6 34 34 H 1.09007 * 109.47306 * 300.00037 * 11 10 7 35 35 H 1.09000 * 109.47246 * 60.00073 * 11 10 7 36 36 H 1.09008 * 109.46364 * 299.99704 * 12 11 10 37 37 H 1.08997 * 109.47615 * 59.99410 * 12 11 10 38 38 H 1.00893 * 110.99865 * 180.02562 * 13 12 11 39 39 H 1.00903 * 110.99427 * 303.94373 * 13 12 11 40 40 H 1.08007 * 119.78480 * 179.97438 * 14 5 4 41 41 H 1.08001 * 119.99944 * 180.30248 * 15 14 5 42 42 H 0.96999 * 119.99936 * 353.89616 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2975 2.3693 -0.0005 5 6 1.9345 3.6071 -0.0011 6 7 1.1785 4.7727 -0.0021 7 6 1.8358 6.0723 0.1562 8 1 2.8423 5.9250 0.5481 9 7 1.9116 6.7448 -1.1475 10 6 1.0307 6.9357 1.1295 11 6 1.7169 8.2932 1.2944 12 6 0.9122 9.1565 2.2682 13 7 1.5707 10.4601 2.4260 14 6 3.3295 3.6844 -0.0016 15 6 4.0835 2.5498 0.0047 16 6 3.4573 1.2880 -0.0001 17 6 4.2336 0.1113 0.0009 18 1 3.8259 -0.8042 0.4033 19 6 5.5316 0.1295 -0.5193 20 7 5.8621 1.0166 -1.4239 21 14 6.7939 -1.1120 0.0764 22 1 8.0829 -0.8824 -0.6244 23 1 6.9916 -0.9537 1.5396 24 1 6.3110 -2.4863 -0.2121 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2187 2.3169 -0.0002 29 1 0.2154 4.7259 -0.1078 30 1 0.9905 6.8928 -1.5322 31 1 2.4179 7.6146 -1.0768 32 1 0.0244 7.0829 0.7376 33 1 0.9745 6.4367 2.0969 34 1 2.7235 8.1464 1.6861 35 1 1.7727 8.7920 0.3269 36 1 -0.0945 9.3033 1.8767 37 1 0.8567 8.6575 3.2356 38 1 1.0583 11.0489 3.0653 39 1 2.5275 10.3479 2.7263 40 1 3.8134 4.6500 -0.0024 41 1 5.1613 2.6177 0.0092 42 1 5.1859 1.6030 -1.7980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170899225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:18 Heat of formation + Delta-G solvation = -20.567070 kcal Electronic energy + Delta-G solvation = -21581.829625 eV Core-core repulsion = 18368.300701 eV Total energy + Delta-G solvation = -3213.528924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.92607 -37.85042 -36.34099 -35.25223 -33.80866 -31.69314 -30.50532 -28.92390 -28.45766 -26.39592 -25.90022 -24.04197 -22.35460 -21.43905 -20.66391 -19.84575 -17.89764 -16.97812 -16.35125 -15.92233 -15.73726 -15.30000 -14.93120 -14.68442 -14.52192 -14.29348 -13.97909 -13.75181 -13.50189 -13.08890 -12.79229 -12.45227 -11.97879 -11.84559 -11.63709 -11.47146 -11.25193 -11.16511 -10.92591 -10.82944 -10.52262 -10.41802 -10.26424 -9.84641 -9.36329 -9.09068 -9.00816 -8.65705 -8.39570 -7.27078 -6.95396 -6.52808 -3.94199 2.86895 2.95996 3.30329 3.41629 3.50795 3.92930 4.22787 4.30531 4.51239 4.61508 4.71660 4.78770 4.89083 5.11853 5.17865 5.36660 5.48996 5.58823 5.61342 5.70623 5.74766 5.81441 5.93856 6.00985 6.05403 6.10546 6.38663 6.68719 6.73249 6.85551 7.03541 7.05158 7.22558 7.29832 7.55144 7.61211 7.77406 7.97730 8.20969 8.28873 8.47750 8.54920 8.64586 9.09694 9.15617 10.34564 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.003891 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.702269 B = 7194.937409 C = 8138.168309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.043 3.957 4 C -0.229 4.229 5 C 0.117 3.883 6 N -0.743 5.743 7 C 0.328 3.672 8 H 0.096 0.904 9 N -0.856 5.856 10 C -0.162 4.162 11 C -0.118 4.118 12 C 0.062 3.938 13 N -0.854 5.854 14 C -0.163 4.163 15 C -0.163 4.163 16 C 0.056 3.944 17 C -0.517 4.517 18 H 0.074 0.926 19 C 0.036 3.964 20 N -0.815 5.815 21 Si 1.063 2.937 22 H -0.277 1.277 23 H -0.278 1.278 24 H -0.279 1.279 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.381 0.619 30 H 0.333 0.667 31 H 0.340 0.660 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.340 0.660 39 H 0.341 0.659 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.719 11.770 5.631 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.223 6.223 3 C -0.002 4.002 4 C -0.252 4.252 5 C 0.020 3.980 6 N -0.378 5.378 7 C 0.130 3.870 8 H 0.114 0.886 9 N -0.389 5.389 10 C -0.204 4.204 11 C -0.156 4.156 12 C -0.069 4.069 13 N -0.383 5.383 14 C -0.185 4.185 15 C -0.183 4.183 16 C 0.052 3.948 17 C -0.547 4.547 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.440 5.440 21 Si 0.888 3.112 22 H -0.202 1.202 23 H -0.203 1.203 24 H -0.205 1.205 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.213 0.787 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.574 10.692 4.446 13.316 hybrid contribution -2.919 1.218 1.513 3.506 sum -9.494 11.910 5.959 16.355 Atomic orbital electron populations 1.22717 0.81872 1.01665 0.99795 1.85995 1.18092 1.28173 1.90007 1.18878 0.92075 0.82183 1.07105 1.20101 0.97101 0.91540 1.16476 1.16875 0.90265 0.84544 1.06308 1.43793 1.06917 1.02196 1.84892 1.20873 0.96761 0.82566 0.86789 0.88636 1.59060 1.22960 1.29445 1.27438 1.22621 1.00016 0.95886 1.01855 1.21571 0.99323 0.94601 1.00133 1.21794 0.98249 0.89070 0.97806 1.58741 1.06921 1.15122 1.57496 1.19962 0.91461 0.97412 1.09655 1.20517 0.98707 0.91019 1.08070 1.16985 0.87761 0.93783 0.96223 1.20149 0.99803 0.97039 1.37703 0.90823 1.26824 0.98908 0.99321 0.93193 1.70490 1.39759 1.16073 1.17707 0.83676 0.75466 0.75166 0.76914 1.20202 1.20342 1.20453 0.94342 0.94248 0.90064 0.88615 0.78725 0.85475 0.84472 0.92113 0.91120 0.91749 0.91172 0.91226 0.95500 0.84766 0.84666 0.88790 0.86999 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.31 -7.39 9.79 -18.69 -0.18 -7.58 16 3 C 0.04 1.09 6.71 -38.43 -0.26 0.83 16 4 C -0.23 -5.15 8.87 -39.29 -0.35 -5.50 16 5 C 0.12 2.53 6.65 -83.73 -0.56 1.97 16 6 N -0.74 -12.48 5.32 -54.94 -0.29 -12.77 16 7 C 0.33 4.61 3.32 -127.21 -0.42 4.19 16 8 H 0.10 1.54 5.77 -51.93 -0.30 1.24 16 9 N -0.86 -11.16 9.34 -7.34 -0.07 -11.23 16 10 C -0.16 -1.74 5.20 -26.73 -0.14 -1.88 16 11 C -0.12 -1.09 5.14 -26.73 -0.14 -1.23 16 12 C 0.06 0.52 6.79 -3.82 -0.03 0.49 16 13 N -0.85 -6.58 9.62 -10.37 -0.10 -6.68 16 14 C -0.16 -3.80 9.10 -39.75 -0.36 -4.16 16 15 C -0.16 -4.26 7.89 -39.31 -0.31 -4.57 16 16 C 0.06 1.55 5.31 -106.64 -0.57 0.98 16 17 C -0.52 -14.62 8.63 -37.95 -0.33 -14.95 16 18 H 0.07 2.10 7.71 -52.49 -0.40 1.70 16 19 C 0.04 0.98 4.93 -17.33 -0.09 0.89 16 20 N -0.81 -22.77 12.31 55.54 0.68 -22.09 16 21 Si 1.06 22.99 30.00 -169.99 -5.10 17.89 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.10 1.89 6.29 -52.48 -0.33 1.56 16 29 H 0.38 5.74 8.79 -40.82 -0.36 5.39 16 30 H 0.33 3.91 9.04 -39.29 -0.36 3.55 16 31 H 0.34 3.76 7.39 -39.29 -0.29 3.47 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.07 0.65 6.76 -51.93 -0.35 0.30 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.34 2.06 9.08 -39.30 -0.36 1.71 16 39 H 0.34 2.34 8.99 -39.29 -0.35 1.99 16 40 H 0.09 2.03 6.02 -52.48 -0.32 1.71 16 41 H 0.11 3.03 6.50 -52.49 -0.34 2.69 16 42 H 0.30 8.52 6.72 -40.82 -0.27 8.24 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.75 339.28 -8.65 -39.40 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -6.16 Total: 19.26 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.55 Total: -21.32 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.22 Total: -52.77 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.18 Total: -7.58 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.10 Total: 17.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.75 -8.65 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170899225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.831 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds