Wall clock time and date at job start Fri Apr 10 2020 17:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35662 * 116.99971 * 2 1 4 4 C 1.38038 * 120.21711 * 359.97438 * 3 2 1 5 5 C 1.39216 * 119.98466 * 180.02562 * 4 3 2 6 6 N 1.38925 * 119.79774 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99870 * 172.80349 * 6 5 4 8 8 H 1.09004 * 109.46807 * 343.46148 * 7 6 5 9 9 N 1.46894 * 109.47072 * 103.45924 * 7 6 5 10 10 C 1.53002 * 109.46789 * 223.46025 * 7 6 5 11 11 C 1.53000 * 109.46733 * 180.02562 * 10 7 6 12 12 C 1.53001 * 109.47166 * 180.02562 * 11 10 7 13 13 N 1.46900 * 109.47275 * 180.02562 * 12 11 10 14 14 C 1.39712 * 120.40257 * 0.02562 * 5 4 3 15 15 C 1.36234 * 120.43399 * 359.69137 * 14 5 4 16 16 C 1.40860 * 120.00074 * 0.56170 * 15 14 5 17 17 C 1.40963 * 120.19408 * 179.74056 * 16 15 14 18 18 H 1.07998 * 119.99949 * 154.29048 * 17 16 15 19 19 C 1.39846 * 120.00125 * 334.28807 * 17 16 15 20 20 N 1.30945 * 120.00201 * 334.52155 * 19 17 16 21 21 Si 1.86805 * 119.99910 * 154.52535 * 19 17 16 22 22 H 1.48503 * 109.46976 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47068 * 299.99848 * 21 19 17 24 24 H 1.48495 * 109.47176 * 60.00037 * 21 19 17 25 25 H 1.08997 * 109.47035 * 300.00022 * 1 2 3 26 26 H 1.09002 * 109.47573 * 59.99694 * 1 2 3 27 27 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00393 * 0.04455 * 4 3 2 29 29 H 0.97000 * 119.99636 * 352.80115 * 6 5 4 30 30 H 1.00906 * 111.00095 * 60.00033 * 9 7 6 31 31 H 1.00899 * 110.99923 * 183.95008 * 9 7 6 32 32 H 1.08995 * 109.47407 * 299.99768 * 10 7 6 33 33 H 1.09000 * 109.47194 * 60.00076 * 10 7 6 34 34 H 1.09007 * 109.47306 * 300.00037 * 11 10 7 35 35 H 1.09000 * 109.47246 * 60.00073 * 11 10 7 36 36 H 1.09008 * 109.46364 * 299.99704 * 12 11 10 37 37 H 1.08997 * 109.47615 * 59.99410 * 12 11 10 38 38 H 1.00893 * 110.99865 * 180.02562 * 13 12 11 39 39 H 1.00903 * 110.99427 * 303.94373 * 13 12 11 40 40 H 1.08007 * 119.78480 * 179.97438 * 14 5 4 41 41 H 1.08001 * 119.99944 * 180.30248 * 15 14 5 42 42 H 0.96999 * 119.99936 * 353.89616 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2975 2.3693 -0.0005 5 6 1.9345 3.6071 -0.0011 6 7 1.1785 4.7727 -0.0021 7 6 1.8358 6.0723 0.1562 8 1 2.8423 5.9250 0.5481 9 7 1.9116 6.7448 -1.1475 10 6 1.0307 6.9357 1.1295 11 6 1.7169 8.2932 1.2944 12 6 0.9122 9.1565 2.2682 13 7 1.5707 10.4601 2.4260 14 6 3.3295 3.6844 -0.0016 15 6 4.0835 2.5498 0.0047 16 6 3.4573 1.2880 -0.0001 17 6 4.2336 0.1113 0.0009 18 1 3.8259 -0.8042 0.4033 19 6 5.5316 0.1295 -0.5193 20 7 5.8621 1.0166 -1.4239 21 14 6.7939 -1.1120 0.0764 22 1 8.0829 -0.8824 -0.6244 23 1 6.9916 -0.9537 1.5396 24 1 6.3110 -2.4863 -0.2121 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2187 2.3169 -0.0002 29 1 0.2154 4.7259 -0.1078 30 1 0.9905 6.8928 -1.5322 31 1 2.4179 7.6146 -1.0768 32 1 0.0244 7.0829 0.7376 33 1 0.9745 6.4367 2.0969 34 1 2.7235 8.1464 1.6861 35 1 1.7727 8.7920 0.3269 36 1 -0.0945 9.3033 1.8767 37 1 0.8567 8.6575 3.2356 38 1 1.0583 11.0489 3.0653 39 1 2.5275 10.3479 2.7263 40 1 3.8134 4.6500 -0.0024 41 1 5.1613 2.6177 0.0092 42 1 5.1859 1.6030 -1.7980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170899225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:17 Heat of formation + Delta-G solvation = -44.958173 kcal Electronic energy + Delta-G solvation = -21582.887302 eV Core-core repulsion = 18368.300701 eV Total energy + Delta-G solvation = -3214.586602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69215 -39.16980 -37.84462 -36.50781 -35.31531 -33.25159 -31.41040 -30.77716 -30.16834 -27.97067 -27.01772 -25.77108 -23.58264 -22.81973 -22.09719 -21.35454 -19.83550 -18.59485 -17.53211 -17.06253 -16.94734 -16.35737 -16.32870 -16.11751 -15.93822 -15.86936 -15.46730 -15.12212 -14.67590 -14.48457 -14.29019 -14.04714 -13.57066 -13.31923 -13.01481 -12.67499 -12.59438 -12.50756 -12.31037 -12.16036 -11.99386 -11.92671 -11.76520 -11.58458 -11.26373 -10.84544 -10.42693 -9.68698 -9.59060 -9.17619 -8.93373 -8.34258 -5.98112 0.94413 1.07608 1.53499 1.68804 1.83321 2.44158 2.62731 2.80230 2.89156 3.53508 3.64241 3.84027 3.86747 3.95229 4.20455 4.25152 4.34758 4.41568 4.44330 4.50111 4.50574 4.69320 4.73524 4.77301 4.85477 4.86594 5.10774 5.17016 5.20296 5.26004 5.40787 5.62607 5.82771 5.95624 6.16582 6.16841 6.25990 6.27908 6.49710 6.52901 6.65076 6.91339 7.09276 7.11679 7.28546 8.26449 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.003891 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.702269 B = 7194.937409 C = 8138.168309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C 0.041 3.959 4 C -0.239 4.239 5 C 0.151 3.849 6 N -0.732 5.732 7 C 0.326 3.674 8 H 0.074 0.926 9 N -0.866 5.866 10 C -0.146 4.146 11 C -0.111 4.111 12 C 0.065 3.935 13 N -0.860 5.860 14 C -0.182 4.182 15 C -0.166 4.166 16 C 0.009 3.991 17 C -0.556 4.556 18 H 0.056 0.944 19 C -0.002 4.002 20 N -0.840 5.840 21 Si 1.115 2.885 22 H -0.272 1.272 23 H -0.266 1.266 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.130 0.870 29 H 0.395 0.605 30 H 0.343 0.657 31 H 0.354 0.646 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.350 0.650 39 H 0.345 0.655 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 13.261 6.224 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.005 4.005 4 C -0.262 4.262 5 C 0.050 3.950 6 N -0.367 5.367 7 C 0.129 3.871 8 H 0.092 0.908 9 N -0.401 5.401 10 C -0.188 4.188 11 C -0.150 4.150 12 C -0.066 4.066 13 N -0.391 5.391 14 C -0.204 4.204 15 C -0.186 4.186 16 C 0.005 3.995 17 C -0.587 4.587 18 H 0.074 0.926 19 C -0.214 4.214 20 N -0.467 5.467 21 Si 0.933 3.067 22 H -0.196 1.196 23 H -0.191 1.191 24 H -0.189 1.189 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.147 0.853 29 H 0.229 0.771 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.693 12.246 5.046 15.843 hybrid contribution -2.572 0.965 1.341 3.057 sum -11.265 13.210 6.386 18.498 Atomic orbital electron populations 1.23091 0.78487 1.04213 1.01015 1.85946 1.21658 1.27883 1.89839 1.19096 0.91867 0.83731 1.05774 1.20381 0.98700 0.90737 1.16345 1.17030 0.89991 0.86128 1.01816 1.43871 1.07470 1.01820 1.83551 1.20940 0.96178 0.81913 0.88066 0.90774 1.58893 1.23993 1.30404 1.26847 1.22414 1.00237 0.95755 1.00352 1.21499 0.99044 0.93865 1.00601 1.21724 0.98194 0.89217 0.97497 1.58732 1.07385 1.14907 1.58083 1.20093 0.92466 0.97132 1.10691 1.20447 0.98028 0.91863 1.08303 1.17306 0.89435 0.94117 0.98616 1.20195 1.01396 0.96929 1.40134 0.92557 1.28194 1.00630 1.00356 0.92229 1.70618 1.38890 1.17688 1.19458 0.83044 0.73225 0.73463 0.76994 1.19637 1.19093 1.18940 0.92713 0.93099 0.87120 0.85276 0.77082 0.84272 0.82981 0.90564 0.91757 0.92283 0.90879 0.90894 0.95477 0.83686 0.84211 0.87334 0.89097 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 1.99 16 2 O -0.34 -16.24 9.79 -89.78 -0.88 -17.11 16 3 C 0.04 2.10 6.71 23.02 0.15 2.25 16 4 C -0.24 -10.33 8.87 22.46 0.20 -10.13 16 5 C 0.15 6.27 6.65 38.61 0.26 6.52 16 6 N -0.73 -22.53 5.32 -327.72 -1.74 -24.28 16 7 C 0.33 8.38 3.32 129.42 0.43 8.81 16 8 H 0.07 2.27 5.77 -2.38 -0.01 2.26 16 9 N -0.87 -20.35 9.34 -177.15 -1.65 -22.01 16 10 C -0.15 -2.70 5.20 30.60 0.16 -2.55 16 11 C -0.11 -1.78 5.14 30.59 0.16 -1.62 16 12 C 0.06 0.91 6.79 86.30 0.59 1.50 16 13 N -0.86 -11.30 9.62 -186.71 -1.80 -13.10 16 14 C -0.18 -8.52 9.10 22.16 0.20 -8.32 16 15 C -0.17 -9.06 7.89 22.44 0.18 -8.89 16 16 C 0.01 0.50 5.31 -21.17 -0.11 0.39 16 17 C -0.56 -33.10 8.63 23.33 0.20 -32.90 16 18 H 0.06 3.40 7.71 -2.91 -0.02 3.38 16 19 C 0.00 -0.12 4.93 85.21 0.42 0.30 16 20 N -0.84 -49.38 12.31 21.81 0.27 -49.11 16 21 Si 1.11 47.85 30.00 68.60 2.06 49.91 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 26 H 0.05 1.54 7.66 -2.39 -0.02 1.53 16 27 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.13 4.65 6.29 -2.91 -0.02 4.63 16 29 H 0.39 10.35 8.79 -92.71 -0.82 9.54 16 30 H 0.34 6.95 9.04 -89.69 -0.81 6.14 16 31 H 0.35 6.93 7.39 -89.69 -0.66 6.27 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.14 6.76 -2.39 -0.02 1.13 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.35 3.47 9.08 -89.70 -0.81 2.65 16 39 H 0.35 4.06 8.99 -89.69 -0.81 3.26 16 40 H 0.11 4.70 6.02 -2.91 -0.02 4.68 16 41 H 0.09 5.24 6.50 -2.91 -0.02 5.22 16 42 H 0.28 16.96 6.72 -92.71 -0.62 16.34 16 Total: -1.00 -70.05 339.28 -2.48 -72.53 By element: Atomic # 1 Polarization: 48.48 SS G_CDS: -2.67 Total: 45.81 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 3.94 Total: -42.64 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.93 Total: -108.49 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.88 Total: -17.11 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.06 Total: 49.91 kcal Total: -70.05 -2.48 -72.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170899225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.571 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds