Wall clock time and date at job start Fri Apr 10 2020 17:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00016 * 2 1 4 4 H 1.48503 * 109.46782 * 239.99984 * 3 2 1 5 5 H 1.48493 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46787 * 119.99829 * 3 2 1 7 7 C 1.37875 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00818 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47214 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47288 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47346 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00115 * 26.49979 * 13 12 11 15 15 N 1.34783 * 120.00100 * 206.50027 * 13 12 11 16 16 C 1.46501 * 119.99543 * 189.44275 * 15 13 12 17 17 C 1.53775 * 113.62145 * 12.69871 * 16 15 13 18 18 C 1.53953 * 87.02163 * 89.22704 * 17 16 15 19 19 C 1.53777 * 87.11106 * 25.36678 * 18 17 16 20 20 C 1.46495 * 120.00242 * 9.44270 * 15 13 12 21 21 C 1.53784 * 113.61256 * 53.47563 * 20 15 13 22 22 C 1.53951 * 87.01976 * 220.05092 * 21 20 15 23 23 C 1.53776 * 87.11227 * 25.36350 * 22 21 20 24 24 H 0.97001 * 119.99566 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47146 * 59.99688 * 9 7 2 26 26 H 1.08995 * 109.47401 * 300.00188 * 9 7 2 27 27 H 1.09001 * 109.46445 * 60.00096 * 10 9 7 28 28 H 1.09003 * 109.47256 * 300.00403 * 10 9 7 29 29 H 1.09004 * 109.47048 * 60.00187 * 11 10 9 30 30 H 1.09003 * 109.47398 * 300.00412 * 11 10 9 31 31 H 1.09004 * 109.46952 * 60.00093 * 12 11 10 32 32 H 1.08995 * 109.47421 * 300.00700 * 12 11 10 33 33 H 1.09001 * 112.84826 * 241.49482 * 16 15 13 34 34 H 1.08992 * 113.62123 * 203.75074 * 17 16 15 35 35 H 1.09002 * 113.61327 * 334.65241 * 17 16 15 36 36 H 1.09006 * 113.53909 * 270.81776 * 18 17 16 37 37 H 1.08995 * 113.74229 * 139.94733 * 18 17 16 38 38 H 1.09002 * 113.61733 * 220.09696 * 19 18 17 39 39 H 1.08995 * 113.61800 * 89.18504 * 19 18 17 40 40 H 1.08994 * 112.85365 * 184.67590 * 20 15 13 41 41 H 1.09000 * 113.61337 * 334.56944 * 21 20 15 42 42 H 1.09002 * 113.61244 * 105.46952 * 21 20 15 43 43 H 1.09004 * 113.53718 * 270.81094 * 22 21 20 44 44 H 1.09005 * 113.74404 * 139.94782 * 22 21 20 45 45 H 1.09001 * 113.61470 * 220.09123 * 23 22 21 46 46 H 1.09003 * 113.61569 * 89.19098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4744 -6.1500 0.0018 13 6 1.7210 -7.4550 0.0018 14 8 0.6039 -7.5104 -0.4673 15 7 2.2885 -8.5609 0.5231 16 6 1.6505 -9.8670 0.3406 17 6 0.5283 -9.8631 -0.7107 18 6 1.6132 -10.1901 -1.7529 19 6 2.4250 -10.8048 -0.6005 20 6 3.5432 -8.4567 1.2721 21 6 3.4933 -7.4323 2.4180 22 6 4.9231 -7.0301 2.0133 23 6 4.5855 -7.5446 0.6040 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.1011 -6.0918 0.8919 32 1 3.1012 -6.0927 -0.8880 33 1 1.3642 -10.3335 1.2832 34 1 -0.2008 -10.6616 -0.5742 35 1 0.0660 -8.8862 -0.8523 36 1 2.0770 -9.3061 -2.1907 37 1 1.2979 -10.9172 -2.5012 38 1 3.4917 -10.5869 -0.6530 39 1 2.2154 -11.8613 -0.4337 40 1 3.9396 -9.4271 1.5708 41 1 2.7579 -6.6424 2.2658 42 1 3.4298 -7.8863 3.4070 43 1 5.6972 -7.6099 2.5160 44 1 5.1051 -5.9561 2.0541 45 1 5.4026 -8.0890 0.1306 46 1 4.1493 -6.7853 -0.0451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590048989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:37 Heat of formation + Delta-G solvation = 39.319572 kcal Electronic energy + Delta-G solvation = -22681.262519 eV Core-core repulsion = 19573.870818 eV Total energy + Delta-G solvation = -3107.391701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50555 -38.80436 -37.58933 -34.84683 -33.08026 -32.59088 -29.87911 -26.44475 -25.99139 -25.79216 -25.25662 -24.42831 -22.48759 -20.43288 -20.26202 -19.51858 -19.08150 -17.13736 -16.20028 -16.06819 -15.84077 -15.28086 -14.97281 -14.67823 -14.38204 -14.25127 -13.98530 -13.18652 -13.06480 -12.79738 -12.45204 -12.32916 -12.15786 -12.02728 -11.70999 -11.56546 -11.32951 -11.09148 -10.94987 -10.88492 -10.61525 -10.59909 -10.49603 -10.44643 -10.42151 -10.00440 -9.60233 -9.25306 -9.00474 -8.74629 -8.52339 -8.29518 -5.94390 -3.96977 2.59334 2.84860 3.35840 3.40324 3.42428 4.23667 4.33178 4.39862 4.49772 4.54759 4.59988 4.69033 4.75799 4.86514 4.93459 5.09293 5.25041 5.34474 5.40938 5.42648 5.50978 5.58475 5.59702 5.64846 5.68923 5.77211 5.78158 5.80047 5.91827 6.02409 6.07528 6.13329 6.24344 6.28488 6.32541 6.55167 6.82838 6.94917 7.00621 7.19864 7.38276 7.74447 7.90575 8.06817 8.34415 8.48579 9.10495 9.66636 11.16876 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.003581 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.392069 B = 7818.220705 C = 8573.758171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.524 3.476 14 O -0.518 6.518 15 N -0.593 5.593 16 C 0.117 3.883 17 C -0.204 4.204 18 C -0.136 4.136 19 C -0.151 4.151 20 C 0.125 3.875 21 C -0.166 4.166 22 C -0.139 4.139 23 C -0.193 4.193 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -22.362 2.523 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.205 4.205 13 C 0.315 3.685 14 O -0.396 6.396 15 N -0.324 5.324 16 C 0.013 3.987 17 C -0.239 4.239 18 C -0.173 4.173 19 C -0.189 4.189 20 C 0.020 3.980 21 C -0.204 4.204 22 C -0.177 4.177 23 C -0.231 4.231 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.165 -22.292 2.276 23.849 hybrid contribution 0.686 0.588 0.106 0.909 sum 8.851 -21.704 2.382 23.560 Atomic orbital electron populations 1.69962 1.06045 1.26612 1.50842 1.25034 0.94832 0.99194 0.95451 0.86681 0.79590 0.83295 0.78551 1.20280 1.21328 1.20285 1.21244 0.92938 0.91206 1.50536 0.92810 1.19090 0.94043 0.91249 0.97290 1.21636 0.99068 0.93921 1.00053 1.21560 0.97215 0.93002 1.02877 1.22813 1.00321 0.92456 1.04904 1.21010 0.86219 0.85367 0.75878 1.90098 1.19307 1.83127 1.47039 1.47597 1.24181 1.06326 1.54345 1.21931 0.95413 0.83589 0.97723 1.24627 0.96809 1.08840 0.93656 1.22760 0.97898 1.00222 0.96459 1.23300 0.99428 0.98851 0.97324 1.22633 0.83738 0.99069 0.92510 1.23782 0.98315 0.99542 0.98767 1.22708 0.96429 1.02295 0.96259 1.24464 0.98987 1.01036 0.98600 0.92992 0.96572 0.96649 0.93525 0.93436 0.91303 0.92281 0.87082 0.88323 0.90708 0.90825 0.82191 0.90849 0.91973 0.91504 0.89590 0.87214 0.88245 0.90843 0.89949 0.90128 0.91219 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.35 16 11 C -0.11 -1.91 4.77 -26.74 -0.13 -2.04 16 12 C -0.17 -2.25 3.08 -27.89 -0.09 -2.34 16 13 C 0.52 7.43 6.68 -10.98 -0.07 7.35 16 14 O -0.52 -8.89 12.25 5.55 0.07 -8.83 16 15 N -0.59 -6.75 2.86 -156.75 -0.45 -7.20 16 16 C 0.12 1.26 4.49 -67.12 -0.30 0.96 16 17 C -0.20 -2.46 7.16 -25.83 -0.19 -2.65 16 18 C -0.14 -1.48 7.85 -25.83 -0.20 -1.68 16 19 C -0.15 -1.36 7.78 -25.92 -0.20 -1.57 16 20 C 0.12 1.11 4.26 -67.12 -0.29 0.82 16 21 C -0.17 -1.51 7.21 -25.83 -0.19 -1.69 16 22 C -0.14 -1.11 7.62 -25.83 -0.20 -1.31 16 23 C -0.19 -1.66 7.15 -25.92 -0.19 -1.84 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.31 7.86 -51.93 -0.41 0.91 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.32 2.77 -51.93 -0.14 1.17 16 32 H 0.10 1.23 6.90 -51.93 -0.36 0.87 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.16 2.47 3.98 -58.02 -0.23 2.23 16 36 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.10 1.09 5.64 -51.93 -0.29 0.80 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.12 1.20 3.30 -52.84 -0.17 1.03 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -31.60 348.59 -10.03 -41.64 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.90 Total: 0.68 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.72 Total: -21.65 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.29 Total: -33.92 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.60 -10.03 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590048989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.959 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds