Wall clock time and date at job start Fri Apr 10 2020 17:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00016 * 2 1 4 4 H 1.48503 * 109.46782 * 239.99984 * 3 2 1 5 5 H 1.48493 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46787 * 119.99829 * 3 2 1 7 7 C 1.37875 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00818 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47214 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47288 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47346 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00115 * 26.49979 * 13 12 11 15 15 N 1.34783 * 120.00100 * 206.50027 * 13 12 11 16 16 C 1.46501 * 119.99543 * 189.44275 * 15 13 12 17 17 C 1.53775 * 113.62145 * 12.69871 * 16 15 13 18 18 C 1.53953 * 87.02163 * 89.22704 * 17 16 15 19 19 C 1.53777 * 87.11106 * 25.36678 * 18 17 16 20 20 C 1.46495 * 120.00242 * 9.44270 * 15 13 12 21 21 C 1.53784 * 113.61256 * 53.47563 * 20 15 13 22 22 C 1.53951 * 87.01976 * 220.05092 * 21 20 15 23 23 C 1.53776 * 87.11227 * 25.36350 * 22 21 20 24 24 H 0.97001 * 119.99566 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47146 * 59.99688 * 9 7 2 26 26 H 1.08995 * 109.47401 * 300.00188 * 9 7 2 27 27 H 1.09001 * 109.46445 * 60.00096 * 10 9 7 28 28 H 1.09003 * 109.47256 * 300.00403 * 10 9 7 29 29 H 1.09004 * 109.47048 * 60.00187 * 11 10 9 30 30 H 1.09003 * 109.47398 * 300.00412 * 11 10 9 31 31 H 1.09004 * 109.46952 * 60.00093 * 12 11 10 32 32 H 1.08995 * 109.47421 * 300.00700 * 12 11 10 33 33 H 1.09001 * 112.84826 * 241.49482 * 16 15 13 34 34 H 1.08992 * 113.62123 * 203.75074 * 17 16 15 35 35 H 1.09002 * 113.61327 * 334.65241 * 17 16 15 36 36 H 1.09006 * 113.53909 * 270.81776 * 18 17 16 37 37 H 1.08995 * 113.74229 * 139.94733 * 18 17 16 38 38 H 1.09002 * 113.61733 * 220.09696 * 19 18 17 39 39 H 1.08995 * 113.61800 * 89.18504 * 19 18 17 40 40 H 1.08994 * 112.85365 * 184.67590 * 20 15 13 41 41 H 1.09000 * 113.61337 * 334.56944 * 21 20 15 42 42 H 1.09002 * 113.61244 * 105.46952 * 21 20 15 43 43 H 1.09004 * 113.53718 * 270.81094 * 22 21 20 44 44 H 1.09005 * 113.74404 * 139.94782 * 22 21 20 45 45 H 1.09001 * 113.61470 * 220.09123 * 23 22 21 46 46 H 1.09003 * 113.61569 * 89.19098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4744 -6.1500 0.0018 13 6 1.7210 -7.4550 0.0018 14 8 0.6039 -7.5104 -0.4673 15 7 2.2885 -8.5609 0.5231 16 6 1.6505 -9.8670 0.3406 17 6 0.5283 -9.8631 -0.7107 18 6 1.6132 -10.1901 -1.7529 19 6 2.4250 -10.8048 -0.6005 20 6 3.5432 -8.4567 1.2721 21 6 3.4933 -7.4323 2.4180 22 6 4.9231 -7.0301 2.0133 23 6 4.5855 -7.5446 0.6040 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.1011 -6.0918 0.8919 32 1 3.1012 -6.0927 -0.8880 33 1 1.3642 -10.3335 1.2832 34 1 -0.2008 -10.6616 -0.5742 35 1 0.0660 -8.8862 -0.8523 36 1 2.0770 -9.3061 -2.1907 37 1 1.2979 -10.9172 -2.5012 38 1 3.4917 -10.5869 -0.6530 39 1 2.2154 -11.8613 -0.4337 40 1 3.9396 -9.4271 1.5708 41 1 2.7579 -6.6424 2.2658 42 1 3.4298 -7.8863 3.4070 43 1 5.6972 -7.6099 2.5160 44 1 5.1051 -5.9561 2.0541 45 1 5.4026 -8.0890 0.1306 46 1 4.1493 -6.7853 -0.0451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590048989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:36 Heat of formation + Delta-G solvation = 22.369091 kcal Electronic energy + Delta-G solvation = -22681.997547 eV Core-core repulsion = 19573.870818 eV Total energy + Delta-G solvation = -3108.126729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.42497 -39.60462 -38.61867 -36.56580 -34.57325 -33.97985 -31.58265 -28.01031 -26.78614 -26.54852 -26.22544 -25.53210 -24.04735 -22.01782 -21.33048 -20.35845 -20.11262 -18.41475 -18.04258 -16.99021 -16.70741 -16.48472 -16.43089 -15.92001 -15.57680 -15.35499 -15.09949 -14.51064 -14.21730 -14.00401 -13.65541 -13.50225 -13.45417 -13.12434 -12.93750 -12.88840 -12.71502 -12.38146 -12.33556 -12.16732 -11.99863 -11.81382 -11.70460 -11.38450 -11.34094 -11.31499 -11.20376 -11.10235 -10.80783 -10.53819 -9.73939 -9.50303 -8.17893 -6.30129 1.40778 1.44811 1.51518 1.52654 1.94689 2.42564 3.14775 3.36065 3.60875 3.66749 3.79181 3.81591 3.88777 4.01303 4.02303 4.03216 4.06139 4.12240 4.47534 4.54284 4.60574 4.68496 4.72063 4.81227 4.83230 4.88892 4.89471 4.90776 4.99872 5.10139 5.11621 5.14111 5.20308 5.21884 5.26407 5.31907 5.35369 5.42864 5.54062 5.57215 5.77614 5.87945 6.02150 6.25848 6.42117 6.87875 7.29104 7.39444 8.94111 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.003581 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.392069 B = 7818.220705 C = 8573.758171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.099 4.099 12 C -0.155 4.155 13 C 0.518 3.482 14 O -0.558 6.558 15 N -0.586 5.586 16 C 0.110 3.890 17 C -0.215 4.215 18 C -0.139 4.139 19 C -0.129 4.129 20 C 0.121 3.879 21 C -0.172 4.172 22 C -0.131 4.131 23 C -0.193 4.193 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.014 1.014 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.062 -23.718 3.290 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.017 4.017 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.193 4.193 13 C 0.309 3.691 14 O -0.439 6.439 15 N -0.316 5.316 16 C 0.007 3.993 17 C -0.251 4.251 18 C -0.176 4.176 19 C -0.167 4.167 20 C 0.019 3.981 21 C -0.210 4.210 22 C -0.169 4.169 23 C -0.231 4.231 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.005 0.995 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.348 -23.678 3.059 26.434 hybrid contribution -0.366 0.970 -0.123 1.044 sum 10.981 -22.708 2.936 25.394 Atomic orbital electron populations 1.70124 1.08058 1.27800 1.51802 1.26078 0.95768 1.03683 0.94759 0.85452 0.78197 0.77744 0.79362 1.18996 1.21091 1.18794 1.21720 0.93738 0.92207 1.50384 0.91584 1.19040 0.94626 0.93691 0.94331 1.21427 0.97830 0.92679 1.01206 1.21350 0.97566 0.93749 1.01081 1.22779 0.99191 0.90639 1.06688 1.21053 0.85877 0.86233 0.75933 1.90162 1.20943 1.83869 1.48888 1.47658 1.24723 1.05836 1.53387 1.22095 0.95311 0.83586 0.98345 1.24541 0.97720 1.07414 0.95459 1.22729 0.97862 0.99904 0.97119 1.23220 0.99400 0.99419 0.94689 1.22963 0.82591 1.00496 0.92079 1.23767 0.98589 0.99089 0.99595 1.22724 0.96111 1.02275 0.95766 1.24391 0.99230 1.00686 0.98789 0.92858 0.99832 0.99528 0.91947 0.92405 0.93649 0.93685 0.84941 0.86889 0.89387 0.89738 0.85438 0.92838 0.91020 0.90488 0.87299 0.84507 0.90657 0.89614 0.87730 0.90796 0.89539 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.09 -3.88 5.15 30.59 0.16 -3.72 16 11 C -0.10 -3.66 4.77 30.59 0.15 -3.51 16 12 C -0.15 -4.19 3.08 29.84 0.09 -4.10 16 13 C 0.52 14.88 6.68 87.65 0.59 15.47 16 14 O -0.56 -20.26 12.25 -3.05 -0.04 -20.30 16 15 N -0.59 -12.56 2.86 -768.23 -2.19 -14.76 16 16 C 0.11 2.17 4.49 45.52 0.20 2.38 16 17 C -0.22 -5.19 7.16 31.18 0.22 -4.96 16 18 C -0.14 -2.88 7.85 31.18 0.24 -2.63 16 19 C -0.13 -1.95 7.78 31.12 0.24 -1.71 16 20 C 0.12 1.82 4.26 45.52 0.19 2.01 16 21 C -0.17 -2.75 7.21 31.18 0.22 -2.52 16 22 C -0.13 -1.69 7.62 31.18 0.24 -1.46 16 23 C -0.19 -2.75 7.15 31.12 0.22 -2.52 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.86 7.86 -2.39 -0.02 1.84 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.13 3.03 2.77 -2.39 -0.01 3.02 16 32 H 0.11 2.74 6.90 -2.39 -0.02 2.72 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.13 4.16 3.98 -98.80 -0.39 3.77 16 36 H 0.05 1.31 8.11 -2.38 -0.02 1.29 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.04 8.06 -2.39 -0.02 1.03 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.14 1.38 8.07 -2.39 -0.02 1.36 16 41 H 0.08 1.59 5.64 -2.39 -0.01 1.58 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.11 1.87 3.30 -3.25 -0.01 1.86 16 Total: -1.00 -71.51 348.59 4.26 -67.26 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.56 Total: 17.01 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 3.62 Total: -37.20 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.91 Total: -73.61 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.04 Total: -20.30 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.51 4.26 -67.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590048989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.626 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds