Wall clock time and date at job start Fri Apr 10 2020 17:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00113 * 2 1 4 4 H 1.48507 * 109.47062 * 240.00119 * 3 2 1 5 5 H 1.48496 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47165 * 120.00222 * 3 2 1 7 7 C 1.37883 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99659 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99523 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46715 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46946 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46992 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00061 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99991 * 180.02562 * 13 12 11 16 16 C 1.46503 * 120.00078 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47184 * 180.02562 * 16 15 13 18 18 H 1.09008 * 115.55064 * 29.27876 * 17 16 15 19 19 C 1.53000 * 117.49920 * 243.61095 * 17 16 15 20 20 C 1.53002 * 60.02940 * 252.47484 * 19 17 16 21 21 H 1.09000 * 117.49996 * 107.50493 * 20 19 17 22 22 C 1.53002 * 117.49773 * 252.51785 * 20 19 17 23 23 C 1.53775 * 113.61809 * 226.11001 * 22 20 19 24 24 C 1.53780 * 87.08396 * 220.02148 * 23 22 20 25 25 C 1.53784 * 113.61332 * 128.60947 * 22 20 19 26 26 H 0.97005 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46762 * 60.00892 * 9 7 2 28 28 H 1.08990 * 109.47184 * 300.00189 * 9 7 2 29 29 H 1.09007 * 109.47086 * 60.00119 * 10 9 7 30 30 H 1.09003 * 109.47293 * 300.00348 * 10 9 7 31 31 H 1.08997 * 109.46638 * 60.00774 * 11 10 9 32 32 H 1.08990 * 109.47077 * 300.00213 * 11 10 9 33 33 H 1.09007 * 109.47086 * 60.00129 * 12 11 10 34 34 H 1.09003 * 109.47293 * 300.00358 * 12 11 10 35 35 H 0.96996 * 120.00004 * 0.02562 * 15 13 12 36 36 H 1.08995 * 109.46693 * 60.00000 * 16 15 13 37 37 H 1.08999 * 109.46801 * 300.00223 * 16 15 13 38 38 H 1.09002 * 117.49833 * 359.97438 * 19 17 16 39 39 H 1.09002 * 117.49953 * 144.97630 * 19 17 16 40 40 H 1.09003 * 112.84913 * 357.41447 * 22 20 19 41 41 H 1.09006 * 113.61192 * 334.56650 * 23 22 20 42 42 H 1.08992 * 113.62006 * 105.47271 * 23 22 20 43 43 H 1.09003 * 113.61296 * 270.88345 * 24 23 22 44 44 H 1.08999 * 113.62164 * 139.97511 * 24 23 22 45 45 H 1.08998 * 113.61353 * 254.53221 * 25 22 20 46 46 H 1.08997 * 113.61408 * 25.43440 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4745 -6.1500 0.0008 13 6 1.7209 -7.4551 0.0008 14 8 0.5081 -7.4551 0.0008 15 7 2.3948 -8.6223 0.0018 16 6 1.6623 -9.8910 0.0024 17 6 2.6565 -11.0539 0.0042 18 1 3.6137 -10.8534 0.4857 19 6 2.6580 -11.9840 -1.2107 20 6 2.0884 -12.4703 0.1235 21 1 1.0061 -12.5739 0.2008 22 6 2.9076 -13.4961 0.9094 23 6 2.0730 -14.6716 1.4444 24 6 2.9100 -14.5780 2.7311 25 6 3.1464 -13.1004 2.3762 26 1 -0.4851 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.8534 -5.0450 -0.8897 32 1 0.8539 -5.0445 0.8902 33 1 3.1011 -6.0918 0.8908 34 1 3.1012 -6.0927 -0.8892 35 1 3.3648 -8.6223 0.0029 36 1 1.0360 -9.9493 -0.8878 37 1 1.0353 -9.9481 0.8921 38 1 1.9504 -11.7676 -2.0111 39 1 3.6162 -12.3950 -1.5287 40 1 3.8135 -13.8041 0.3872 41 1 1.0203 -14.4291 1.5898 42 1 2.2224 -15.5998 0.8930 43 1 3.8164 -15.1831 2.7073 44 1 2.3284 -14.7205 3.6418 45 1 4.1623 -12.7603 2.5768 46 1 2.3872 -12.4284 2.7762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591784973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:12:57 Heat of formation + Delta-G solvation = -51.440222 kcal Electronic energy + Delta-G solvation = -20474.553443 eV Core-core repulsion = 17363.226102 eV Total energy + Delta-G solvation = -3111.327341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89146 -40.16926 -37.67828 -36.61773 -35.11017 -34.59236 -31.60853 -28.89320 -27.21510 -26.44220 -26.27012 -24.01259 -22.18851 -21.95030 -21.70515 -20.94170 -20.20729 -18.41468 -17.87728 -17.29051 -16.95742 -16.51024 -16.36646 -16.06465 -15.74882 -15.06514 -14.73336 -14.59305 -14.50740 -13.90157 -13.58884 -13.54644 -13.36524 -13.28900 -13.24673 -12.78260 -12.61206 -12.38344 -12.31935 -12.15122 -12.11529 -11.74046 -11.49875 -11.37049 -11.35687 -11.32811 -11.17756 -10.89562 -10.71930 -10.53842 -10.49875 -10.03401 -8.17845 -6.30255 1.40653 1.44894 1.52741 1.65839 2.16409 2.42662 2.80224 3.14543 3.53039 3.74418 3.75801 3.86763 3.98575 4.04057 4.11113 4.11839 4.16291 4.22228 4.28956 4.56363 4.60687 4.67922 4.72980 4.74986 4.85689 4.89141 4.90183 4.92154 4.94642 4.96065 5.11280 5.13382 5.20228 5.21256 5.28666 5.34235 5.37792 5.42161 5.50132 5.58217 5.66897 5.78817 5.88613 6.25860 6.58034 6.87993 7.29172 7.39215 8.94123 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.048250 B = 0.001943 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.170640 B =14407.272507 C =14506.432401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.509 3.491 14 O -0.592 6.592 15 N -0.715 5.715 16 C 0.151 3.849 17 C -0.157 4.157 18 H 0.124 0.876 19 C -0.167 4.167 20 C -0.130 4.130 21 H 0.100 0.900 22 C -0.078 4.078 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.137 4.137 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.418 0.582 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -31.728 1.561 33.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.297 3.703 14 O -0.473 6.473 15 N -0.368 5.368 16 C 0.027 3.973 17 C -0.176 4.176 18 H 0.142 0.858 19 C -0.204 4.204 20 C -0.149 4.149 21 H 0.118 0.882 22 C -0.096 4.096 23 C -0.173 4.173 24 C -0.182 4.182 25 C -0.174 4.174 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.786 -31.645 1.560 33.469 hybrid contribution -0.071 1.067 -0.015 1.069 sum 10.715 -30.578 1.546 32.438 Atomic orbital electron populations 1.70129 1.08076 1.27799 1.51784 1.26113 0.95805 1.03781 0.94779 0.85421 0.78151 0.77637 0.79338 1.18906 1.21078 1.18901 1.21733 0.93769 0.92213 1.50384 0.91514 1.19066 0.94732 0.93861 0.94301 1.21453 0.97807 0.92690 1.01366 1.21249 0.97544 0.93752 1.00951 1.21671 0.98889 0.89367 1.06762 1.21241 0.87758 0.86837 0.74472 1.90697 1.16625 1.88472 1.51461 1.45888 1.11186 1.04705 1.75027 1.20817 0.93812 0.81763 1.00923 1.22401 1.00746 0.89948 1.04460 0.85794 1.23289 1.03389 1.02549 0.91144 1.22440 0.99343 0.93644 0.99470 0.88193 1.22164 0.98353 0.94604 0.94511 1.22964 0.98898 0.98388 0.97094 1.22848 1.00581 0.96878 0.97939 1.22920 1.01892 0.96795 0.95792 0.92870 0.99736 0.99742 0.92008 0.92005 0.93968 0.93962 0.86246 0.86272 0.74428 0.92852 0.92752 0.89071 0.87273 0.88395 0.90418 0.91027 0.89524 0.91586 0.91185 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.29 21.45 0.28 -59.23 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 11 C -0.10 -3.57 4.50 30.59 0.14 -3.43 16 12 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 13 C 0.51 14.10 7.83 87.66 0.69 14.79 16 14 O -0.59 -22.84 15.98 -3.05 -0.05 -22.89 16 15 N -0.71 -13.41 5.56 -463.06 -2.57 -15.98 16 16 C 0.15 2.79 5.96 86.38 0.51 3.30 16 17 C -0.16 -1.88 5.37 -10.77 -0.06 -1.94 16 18 H 0.12 1.17 8.04 -2.38 -0.02 1.15 16 19 C -0.17 -1.79 9.86 30.60 0.30 -1.49 16 20 C -0.13 -1.49 5.27 -10.77 -0.06 -1.54 16 21 H 0.10 1.30 7.97 -2.39 -0.02 1.28 16 22 C -0.08 -0.75 3.88 -10.27 -0.04 -0.79 16 23 C -0.14 -1.31 7.63 31.12 0.24 -1.07 16 24 C -0.15 -1.35 8.08 31.12 0.25 -1.09 16 25 C -0.14 -1.40 7.45 31.12 0.23 -1.17 16 26 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.42 4.78 8.40 -92.71 -0.78 4.00 16 36 H 0.05 1.15 7.88 -2.39 -0.02 1.13 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 39 H 0.11 0.90 8.13 -2.39 -0.02 0.88 16 40 H 0.10 0.81 8.07 -2.39 -0.02 0.79 16 41 H 0.08 0.81 7.98 -2.38 -0.02 0.79 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -75.21 376.33 3.21 -72.00 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.14 Total: 10.67 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 3.38 Total: -31.67 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.29 Total: -75.21 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.21 3.21 -72.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591784973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.563 kcal (2) G-P(sol) polarization free energy of solvation -75.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds