Wall clock time and date at job start Fri Apr 10 2020 17:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99919 * 2 1 4 4 H 1.48499 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47019 * 299.99825 * 3 2 1 6 6 H 1.48501 * 109.47257 * 60.00165 * 3 2 1 7 7 C 1.37874 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00343 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47492 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47346 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46990 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99930 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99957 * 179.97438 * 13 12 11 16 16 C 1.47105 * 125.81495 * 355.48402 * 15 13 12 17 17 C 1.53989 * 107.66198 * 182.17343 * 16 15 13 18 18 C 1.55215 * 103.91210 * 17.83410 * 17 16 15 19 19 H 1.09001 * 111.60936 * 210.65951 * 18 17 16 20 20 C 1.52925 * 107.50134 * 88.18768 * 18 17 16 21 21 C 1.54244 * 108.63574 * 192.88352 * 20 18 17 22 22 C 1.52600 * 109.63092 * 63.46422 * 21 20 18 23 23 C 1.51525 * 111.06970 * 300.76911 * 22 21 20 24 24 C 1.46444 * 125.81677 * 175.17552 * 15 13 12 25 25 H 1.09000 * 106.88020 * 272.33191 * 24 15 13 26 26 H 0.96997 * 119.99771 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47360 * 59.99663 * 9 7 2 28 28 H 1.09007 * 109.47082 * 299.99828 * 9 7 2 29 29 H 1.08999 * 109.47404 * 59.99495 * 10 9 7 30 30 H 1.09007 * 109.46809 * 299.99800 * 10 9 7 31 31 H 1.09003 * 109.46880 * 59.98973 * 11 10 9 32 32 H 1.08998 * 109.46704 * 299.99774 * 11 10 9 33 33 H 1.08995 * 109.46979 * 299.99833 * 12 11 10 34 34 H 1.08999 * 109.47036 * 59.99912 * 12 11 10 35 35 H 1.08998 * 109.82192 * 301.70931 * 16 15 13 36 36 H 1.08999 * 109.82369 * 62.64095 * 16 15 13 37 37 H 1.09003 * 110.54429 * 136.43891 * 17 16 15 38 38 H 1.09004 * 110.54212 * 259.22678 * 17 16 15 39 39 H 1.08995 * 109.47728 * 312.12253 * 20 18 17 40 40 H 1.08995 * 109.47865 * 72.13756 * 20 18 17 41 41 H 1.09001 * 109.16295 * 303.43185 * 21 20 18 42 42 H 1.08995 * 109.30130 * 183.58907 * 21 20 18 43 43 H 1.08994 * 109.16145 * 180.35884 * 22 21 20 44 44 H 1.09001 * 109.15731 * 61.17837 * 22 21 20 45 45 H 1.09001 * 108.36661 * 286.06932 * 23 22 21 46 46 H 1.08996 * 108.36454 * 168.95502 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4746 -6.1500 0.0031 13 6 1.7210 -7.4551 0.0044 14 8 0.5083 -7.4551 0.0043 15 7 2.3949 -8.6223 0.0046 16 6 3.8551 -8.7733 -0.0902 17 6 4.1688 -10.2808 -0.1073 18 6 2.8138 -10.9397 -0.4799 19 1 2.7122 -11.9289 -0.0334 20 6 2.7386 -11.0053 -2.0059 21 6 1.2910 -11.3478 -2.4137 22 6 0.3547 -10.2275 -1.9701 23 6 0.4157 -10.0287 -0.4692 24 6 1.7987 -9.9561 0.1057 25 1 1.7078 -10.1825 1.1680 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5566 0.8904 29 1 2.8713 -3.6039 0.8922 30 1 2.8726 -3.6047 -0.8878 31 1 0.8539 -5.0454 -0.8877 32 1 0.8534 -5.0441 0.8923 33 1 3.1012 -6.0927 -0.8869 34 1 3.1012 -6.0918 0.8931 35 1 4.2157 -8.3104 -1.0088 36 1 4.3317 -8.3064 0.7717 37 1 4.9236 -10.5059 -0.8609 38 1 4.4984 -10.6140 0.8768 39 1 3.0105 -10.0367 -2.4252 40 1 3.4282 -11.7661 -2.3715 41 1 0.9957 -12.2815 -1.9350 42 1 1.2388 -11.4602 -3.4966 43 1 -0.6663 -10.4801 -2.2562 44 1 0.6452 -9.3012 -2.4657 45 1 -0.1118 -10.8545 0.0083 46 1 -0.1074 -9.1046 -0.2236 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592666596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:01 Heat of formation + Delta-G solvation = -88.441419 kcal Electronic energy + Delta-G solvation = -22197.731125 eV Core-core repulsion = 19084.799291 eV Total energy + Delta-G solvation = -3112.931833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82109 -39.37999 -36.65035 -36.25541 -34.61307 -33.39909 -31.95347 -30.53797 -29.31576 -27.44568 -24.88359 -24.05286 -23.48745 -22.29368 -21.77509 -20.65224 -19.45429 -18.42524 -17.58625 -17.46620 -16.62310 -16.50434 -16.22558 -15.74256 -15.45590 -15.13119 -14.91762 -14.57589 -14.30764 -13.87848 -13.64177 -13.54356 -13.31549 -13.25856 -13.06502 -12.85162 -12.76445 -12.61317 -12.42080 -12.30779 -12.16763 -12.13936 -11.81199 -11.52423 -11.40056 -11.34042 -11.21542 -11.04679 -10.92466 -10.56541 -10.13268 -9.55501 -8.19400 -6.31761 1.39931 1.41109 1.54631 1.62854 2.02353 2.41501 3.13289 3.39872 3.60176 3.74190 3.86131 4.01826 4.06095 4.09325 4.18002 4.21219 4.37185 4.44279 4.49942 4.54097 4.59612 4.65438 4.71134 4.77283 4.81036 4.83262 4.86351 5.02806 5.05730 5.11004 5.15396 5.17347 5.24392 5.28873 5.32437 5.33961 5.35742 5.39237 5.52484 5.55491 5.76451 5.77547 5.86869 6.24500 6.56182 6.86740 7.22517 7.37969 8.93156 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034355 B = 0.002887 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.831465 B = 9696.873286 C =10092.484895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.093 4.093 12 C -0.123 4.123 13 C 0.524 3.476 14 O -0.576 6.576 15 N -0.613 5.613 16 C 0.089 3.911 17 C -0.121 4.121 18 C -0.089 4.089 19 H 0.112 0.888 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.158 4.158 24 C 0.144 3.856 25 H 0.051 0.949 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.862 -27.964 -1.989 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.163 4.163 13 C 0.314 3.686 14 O -0.457 6.457 15 N -0.347 5.347 16 C -0.033 4.033 17 C -0.159 4.159 18 C -0.108 4.108 19 H 0.130 0.870 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.196 4.196 24 C 0.041 3.959 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.067 -27.790 -1.972 29.977 hybrid contribution -0.579 1.293 0.075 1.419 sum 10.487 -26.497 -1.896 28.560 Atomic orbital electron populations 1.70143 1.08094 1.27708 1.51930 1.26108 0.95796 1.03787 0.94759 0.85318 0.79199 0.78322 0.77707 1.18044 1.20440 1.20424 1.21779 0.93747 0.92193 1.50180 0.91570 1.19050 0.94651 0.93789 0.94286 1.21440 0.97817 0.92719 1.01238 1.21229 0.97402 0.93569 1.00962 1.21644 0.98887 0.89743 1.05980 1.20809 0.87324 0.85509 0.74929 1.90514 1.15952 1.87030 1.52160 1.48376 1.08916 1.05156 1.72243 1.22288 0.78815 0.99197 1.02968 1.22728 0.97148 0.91858 1.04137 1.22050 0.93589 0.98561 0.96612 0.86998 1.21782 0.96573 1.01843 0.94282 1.21646 0.94964 0.97922 1.00867 1.20948 0.99820 0.98337 0.95191 1.21255 0.96984 1.04567 0.96751 1.20680 0.93635 0.82293 0.99301 0.93127 0.92838 0.99749 0.99732 0.92113 0.92161 0.93954 0.93844 0.87092 0.86896 0.90511 0.89896 0.87846 0.89254 0.93229 0.89193 0.90833 0.91649 0.92394 0.95189 0.91378 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.29 21.45 0.28 -59.46 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.09 4.97 29.85 0.15 1.23 16 10 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.09 -3.54 4.50 30.59 0.14 -3.41 16 12 C -0.12 -3.35 4.91 29.85 0.15 -3.21 16 13 C 0.52 15.60 7.72 87.66 0.68 16.27 16 14 O -0.58 -22.22 13.18 -3.02 -0.04 -22.26 16 15 N -0.61 -13.42 3.29 -800.02 -2.63 -16.05 16 16 C 0.09 1.19 6.22 86.60 0.54 1.72 16 17 C -0.12 -1.00 6.33 31.69 0.20 -0.80 16 18 C -0.09 -1.03 3.29 -10.06 -0.03 -1.07 16 19 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 20 C -0.11 -1.29 5.14 30.99 0.16 -1.13 16 21 C -0.12 -1.70 5.92 30.88 0.18 -1.52 16 22 C -0.11 -2.28 5.94 29.98 0.18 -2.10 16 23 C -0.16 -3.75 5.17 29.13 0.15 -3.60 16 24 C 0.14 2.83 2.84 44.02 0.13 2.95 16 25 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.36 16 31 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.51 7.85 -2.39 -0.02 0.49 16 38 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.05 0.75 7.79 -2.39 -0.02 0.73 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 2.68 4.64 -6.76 -0.03 2.65 16 Total: -1.00 -75.29 354.23 4.00 -71.29 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.89 Total: 9.27 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.47 Total: -30.08 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.35 Total: -75.51 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.04 Total: -22.26 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -75.29 4.00 -71.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592666596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.147 kcal (2) G-P(sol) polarization free energy of solvation -75.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds