Wall clock time and date at job start Fri Apr 10 2020 17:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48505 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47311 * 299.99782 * 3 2 1 6 6 H 1.48502 * 109.47227 * 59.99857 * 3 2 1 7 7 C 1.38952 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99863 * 197.99418 * 7 2 1 9 9 N 1.37100 * 119.99993 * 18.00355 * 7 2 1 10 10 C 1.34771 * 120.00308 * 44.47600 * 9 7 2 11 11 O 1.21292 * 120.00049 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99944 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46926 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46908 * 180.02562 * 13 12 10 15 15 C 1.54067 * 108.87590 * 297.98133 * 14 13 12 16 16 C 1.54073 * 112.81505 * 197.50373 * 15 14 13 17 17 C 1.50467 * 112.49906 * 318.28600 * 16 15 14 18 18 C 1.54238 * 108.52182 * 94.14926 * 17 16 15 19 19 C 1.45549 * 112.40826 * 280.01107 * 18 17 16 20 20 C 1.50466 * 108.87537 * 175.00259 * 14 13 12 21 21 C 1.46497 * 119.99547 * 224.48292 * 9 7 2 22 22 C 1.53005 * 117.50205 * 3.27286 * 21 9 7 23 23 C 1.53002 * 117.50046 * 294.61440 * 21 9 7 24 24 H 0.97005 * 119.99700 * 354.96704 * 1 2 3 25 25 H 1.08996 * 109.46846 * 60.00820 * 12 10 9 26 26 H 1.09000 * 109.47013 * 300.00906 * 12 10 9 27 27 H 1.09006 * 109.46793 * 60.00583 * 13 12 10 28 28 H 1.08990 * 109.47450 * 300.00602 * 13 12 10 29 29 H 1.08997 * 108.76430 * 56.48812 * 14 13 12 30 30 H 1.09001 * 108.81642 * 318.36270 * 15 14 13 31 31 H 1.08999 * 108.81699 * 76.75699 * 15 14 13 32 32 H 1.08992 * 108.87727 * 197.50218 * 16 15 14 33 33 H 1.09004 * 108.87148 * 79.06251 * 16 15 14 34 34 H 1.09004 * 109.63075 * 334.44059 * 17 16 15 35 35 H 1.08999 * 109.62838 * 213.85738 * 17 16 15 36 36 H 1.09002 * 108.89830 * 40.76531 * 18 17 16 37 37 H 1.09003 * 108.89764 * 159.35803 * 18 17 16 38 38 H 1.09004 * 108.89659 * 182.69119 * 19 18 17 39 39 H 1.08997 * 108.89112 * 301.18282 * 19 18 17 40 40 H 1.08998 * 109.63091 * 95.21770 * 20 14 13 41 41 H 1.08998 * 109.63243 * 334.64033 * 20 14 13 42 42 H 1.09002 * 115.55480 * 148.94098 * 21 9 7 43 43 H 1.09000 * 117.49677 * 0.02562 * 22 21 9 44 44 H 1.08998 * 117.50327 * 145.01758 * 22 21 9 45 45 H 1.09002 * 117.49719 * 214.98197 * 23 21 9 46 46 H 1.08999 * 117.49942 * 359.97302 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2262 0.2895 9 7 1.3736 -2.3618 -0.3659 10 6 0.5767 -2.3786 -1.4527 11 8 0.4218 -1.3690 -2.1068 12 6 -0.1211 -3.6521 -1.8557 13 6 -0.9560 -3.4002 -3.1129 14 6 -1.6649 -4.6930 -3.5217 15 6 -0.6040 -5.7586 -3.8572 16 6 -1.1743 -6.9324 -4.6763 17 6 -2.5268 -7.3732 -4.1859 18 6 -3.6081 -6.6462 -5.0113 19 6 -3.8347 -5.2840 -4.5515 20 6 -2.5762 -4.4021 -4.6832 21 6 1.5610 -3.5812 0.4240 22 6 2.4156 -3.4793 1.6890 23 6 2.9615 -4.1967 0.4518 24 1 -0.4850 0.8369 0.0737 25 1 -0.7727 -3.9811 -1.0463 26 1 0.6210 -4.4236 -2.0612 27 1 -0.3040 -3.0714 -3.9222 28 1 -1.6979 -2.6286 -2.9077 29 1 -2.2647 -5.0446 -2.6822 30 1 0.1979 -5.2892 -4.4271 31 1 -0.1914 -6.1490 -2.9269 32 1 -0.4848 -7.7741 -4.6134 33 1 -1.2598 -6.6261 -5.7189 34 1 -2.6360 -7.1160 -3.1323 35 1 -2.6300 -8.4505 -4.3154 36 1 -3.2964 -6.6190 -6.0555 37 1 -4.5426 -7.2024 -4.9367 38 1 -4.6387 -4.8419 -5.1400 39 1 -4.1391 -5.3107 -3.5053 40 1 -2.0638 -4.6324 -5.6173 41 1 -2.8629 -3.3506 -4.6693 42 1 0.7110 -4.2634 0.4446 43 1 2.8381 -2.5048 1.9337 44 1 2.1282 -4.0945 2.5416 45 1 3.0328 -5.2837 0.4910 46 1 3.7433 -3.6945 -0.1179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593969439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:05 Heat of formation + Delta-G solvation = -32.165296 kcal Electronic energy + Delta-G solvation = -22814.447402 eV Core-core repulsion = 19703.955885 eV Total energy + Delta-G solvation = -3110.491518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.25117 -38.35456 -36.08654 -34.20980 -32.68028 -32.23121 -30.91963 -29.62258 -25.80732 -24.87963 -24.02311 -21.91888 -21.58958 -21.00625 -20.52921 -19.06885 -18.61305 -16.37103 -15.98391 -15.52945 -15.10985 -14.74857 -14.54884 -14.21676 -13.95019 -13.73612 -13.63819 -13.01942 -12.84028 -12.52160 -12.28150 -12.17611 -11.83173 -11.69640 -11.07781 -11.00847 -10.90664 -10.83156 -10.76251 -10.71276 -10.49812 -10.35624 -10.31704 -10.12773 -10.01126 -9.97168 -9.87228 -9.82324 -9.67545 -8.64466 -7.88917 -6.94052 -6.04970 -3.80056 3.32220 3.41903 3.43912 4.22528 4.33038 4.61695 4.70448 4.84135 4.84816 4.94877 5.18307 5.20378 5.28620 5.34712 5.40756 5.42594 5.49024 5.63625 5.74297 5.75797 5.80561 5.85411 5.90968 5.96427 6.06389 6.09934 6.13569 6.18067 6.23166 6.25307 6.25435 6.29784 6.35770 6.38586 6.43750 6.49688 6.55276 6.65760 6.82015 6.87359 6.95909 6.97805 7.67879 8.34973 9.15144 9.25833 9.75595 10.40805 11.04450 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.004438 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.038496 B = 6307.604834 C = 7189.320538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.348 4.348 8 H 0.075 0.925 9 N -0.433 5.433 10 C 0.483 3.517 11 O -0.535 6.535 12 C -0.132 4.132 13 C -0.094 4.094 14 C -0.085 4.085 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.112 4.112 21 C 0.078 3.922 22 C -0.175 4.175 23 C -0.209 4.209 24 H 0.262 0.738 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -14.136 -5.582 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.475 4.475 8 H 0.093 0.907 9 N -0.154 5.154 10 C 0.271 3.729 11 O -0.413 6.413 12 C -0.173 4.173 13 C -0.132 4.132 14 C -0.104 4.104 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.028 4.028 22 C -0.213 4.213 23 C -0.248 4.248 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.486 -13.461 -6.003 15.407 hybrid contribution 0.389 0.725 0.269 0.865 sum -4.097 -12.737 -5.733 14.556 Atomic orbital electron populations 1.69839 1.06520 1.27101 1.43434 1.25231 0.94801 0.99278 0.94338 0.86188 0.79814 0.82825 0.77432 1.19633 1.20700 1.21250 1.18866 0.94279 0.83931 1.50419 0.90733 1.42825 1.44427 1.06728 1.21443 1.19929 0.82639 0.89111 0.81201 1.90511 1.62541 1.35107 1.53130 1.21642 0.99256 0.98041 0.98314 1.21452 0.98940 0.95791 0.96998 1.21004 0.96184 0.95449 0.97746 1.22010 0.98019 0.95094 0.99845 1.21347 0.96463 0.97793 0.99935 1.21342 0.94833 0.98931 1.00412 1.20484 0.98672 0.96349 0.99739 1.20495 0.98052 0.95541 1.01588 1.21404 0.95363 0.99470 0.98681 1.21671 0.92379 0.91745 0.97022 1.23061 1.04741 1.02393 0.91107 1.23312 0.99998 0.98332 1.03143 0.92789 0.91243 0.90963 0.91892 0.91504 0.91705 0.92144 0.92192 0.92779 0.92405 0.91485 0.92504 0.92464 0.92882 0.92735 0.92189 0.91971 0.91628 0.88119 0.87574 0.89916 0.89914 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.21 11.74 55.50 0.65 -24.56 16 2 C 0.07 2.11 4.39 -17.47 -0.08 2.04 16 3 Si 0.91 22.33 29.59 -169.99 -5.03 17.30 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.35 -9.69 7.91 -14.93 -0.12 -9.81 16 8 H 0.08 2.02 7.27 -52.49 -0.38 1.64 16 9 N -0.43 -11.02 2.83 -107.73 -0.31 -11.33 16 10 C 0.48 12.40 6.96 -10.99 -0.08 12.32 16 11 O -0.54 -15.95 13.75 5.55 0.08 -15.88 16 12 C -0.13 -2.54 4.04 -27.88 -0.11 -2.66 16 13 C -0.09 -1.66 3.71 -26.73 -0.10 -1.76 16 14 C -0.09 -1.15 1.71 -91.33 -0.16 -1.30 16 15 C -0.11 -1.36 4.42 -25.61 -0.11 -1.48 16 16 C -0.12 -1.21 5.31 -27.44 -0.15 -1.35 16 17 C -0.12 -1.13 5.61 -27.35 -0.15 -1.29 16 18 C -0.11 -1.09 5.26 -29.60 -0.16 -1.24 16 19 C -0.12 -1.26 5.26 -29.60 -0.16 -1.42 16 20 C -0.11 -1.37 5.13 -27.35 -0.14 -1.51 16 21 C 0.08 1.60 5.87 -67.93 -0.40 1.20 16 22 C -0.18 -3.23 9.80 -26.69 -0.26 -3.49 16 23 C -0.21 -3.63 10.36 -26.69 -0.28 -3.91 16 24 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 25 H 0.07 1.28 7.56 -51.93 -0.39 0.88 16 26 H 0.07 1.25 6.79 -51.93 -0.35 0.89 16 27 H 0.06 1.18 8.03 -51.93 -0.42 0.77 16 28 H 0.07 1.33 7.91 -51.93 -0.41 0.91 16 29 H 0.06 0.87 6.63 -51.93 -0.34 0.53 16 30 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 31 H 0.06 0.73 7.36 -51.93 -0.38 0.35 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 6.63 -51.93 -0.34 0.24 16 34 H 0.07 0.69 6.98 -51.93 -0.36 0.33 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.66 7.47 -51.93 -0.39 0.27 16 40 H 0.06 0.74 6.98 -51.93 -0.36 0.37 16 41 H 0.07 0.87 7.59 -51.93 -0.39 0.47 16 42 H 0.10 1.84 6.96 -51.93 -0.36 1.48 16 43 H 0.11 2.17 6.73 -51.93 -0.35 1.82 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -32.18 346.60 -9.96 -42.15 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.14 Total: 2.76 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.44 Total: -15.66 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.35 Total: -35.89 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.88 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.18 -9.96 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593969439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.980 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds