Wall clock time and date at job start Fri Apr 10 2020 17:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.93581 * 2 1 4 4 C 1.56168 * 111.20133 * 236.12974 * 2 1 3 5 5 N 1.49324 * 106.50841 * 218.46636 * 4 2 1 6 6 C 1.34777 * 127.11311 * 172.63918 * 5 4 2 7 7 O 1.21279 * 120.00162 * 179.68410 * 6 5 4 8 8 C 1.50706 * 120.00146 * 359.68129 * 6 5 4 9 9 C 1.52999 * 109.46953 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46623 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47494 * 119.99680 * 15 13 11 18 18 H 1.48505 * 109.47047 * 239.99860 * 15 13 11 19 19 C 1.41778 * 105.77142 * 352.37124 * 5 4 2 20 20 H 1.08993 * 105.77136 * 286.91960 * 19 5 4 21 21 C 1.49047 * 131.49145 * 158.15823 * 19 5 4 22 22 C 1.55885 * 104.20697 * 203.01594 * 21 19 5 23 23 C 1.56025 * 105.89122 * 5.17517 * 22 21 19 24 24 C 1.52804 * 111.06949 * 124.04139 * 2 1 3 25 25 H 1.09000 * 112.93342 * 40.40655 * 24 2 1 26 26 H 1.09003 * 109.46958 * 295.95546 * 1 2 3 27 27 H 1.08992 * 109.47716 * 55.95643 * 1 2 3 28 28 H 1.09002 * 109.47339 * 175.96340 * 1 2 3 29 29 H 1.09000 * 109.46981 * 184.04228 * 3 2 1 30 30 H 1.09000 * 109.47216 * 304.04317 * 3 2 1 31 31 H 1.08994 * 109.46964 * 64.04518 * 3 2 1 32 32 H 1.08996 * 110.17615 * 99.14700 * 4 2 1 33 33 H 1.08996 * 109.95249 * 337.66367 * 4 2 1 34 34 H 1.09000 * 109.46974 * 60.00144 * 8 6 5 35 35 H 1.09001 * 109.46547 * 300.00234 * 8 6 5 36 36 H 1.09000 * 109.47486 * 60.00062 * 9 8 6 37 37 H 1.09001 * 109.47362 * 299.99339 * 9 8 6 38 38 H 1.08993 * 109.46955 * 300.00075 * 10 9 8 39 39 H 1.09000 * 109.47050 * 59.99904 * 10 9 8 40 40 H 0.96992 * 120.00032 * 180.02562 * 14 13 11 41 41 H 1.09007 * 110.48690 * 321.69756 * 21 19 5 42 42 H 1.09002 * 110.48678 * 84.20359 * 21 19 5 43 43 H 1.09008 * 110.16365 * 124.28181 * 22 21 19 44 44 H 1.09000 * 110.16571 * 246.07022 * 22 21 19 45 45 H 1.09005 * 110.81012 * 143.70284 * 23 22 21 46 46 H 1.08999 * 110.81194 * 267.01982 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0767 1.4290 0.0000 4 6 2.0947 -0.8114 -1.2089 5 7 3.2933 -1.5454 -0.7044 6 6 4.0147 -2.4743 -1.3626 7 8 4.9745 -2.9878 -0.8279 8 6 3.6286 -2.8750 -2.7632 9 6 4.6025 -3.9376 -3.2764 10 6 4.2101 -4.3449 -4.6981 11 6 5.1697 -5.3910 -5.2038 12 1 5.9787 -5.7311 -4.5743 13 6 5.0155 -5.9133 -6.4704 14 7 4.0305 -5.4988 -7.2372 15 14 6.2044 -7.2106 -7.0971 16 1 7.2154 -7.5030 -6.0493 17 1 5.4564 -8.4512 -7.4238 18 1 6.8871 -6.7085 -8.3166 19 6 3.5192 -1.0585 0.6078 20 1 3.9210 -0.0527 0.4855 21 6 4.2479 -1.6466 1.7674 22 6 3.6306 -0.9336 3.0086 23 6 2.4644 -0.0541 2.4600 24 6 2.0793 -0.7982 1.1815 25 1 1.5187 -1.7131 1.3734 26 1 -0.3633 0.4498 0.9240 27 1 -0.3634 0.5752 -0.8514 28 1 -0.3634 -1.0251 -0.0723 29 1 3.1639 1.4021 -0.0724 30 1 1.6692 1.9740 -0.8515 31 1 1.7864 1.9291 0.9240 32 1 2.3823 -0.1353 -2.0140 33 1 1.3457 -1.5190 -1.5644 34 1 3.6668 -2.0018 -3.4145 35 1 2.6172 -3.2813 -2.7591 36 1 4.5639 -4.8108 -2.6250 37 1 5.6141 -3.5317 -3.2805 38 1 3.1986 -4.7508 -4.6936 39 1 4.2483 -3.4719 -5.3497 40 1 3.9218 -5.8665 -8.1281 41 1 4.0760 -2.7218 1.8205 42 1 5.3147 -1.4350 1.6948 43 1 3.2458 -1.6712 3.7130 44 1 4.3791 -0.3060 3.4923 45 1 1.6293 -0.0376 3.1603 46 1 2.8094 0.9577 2.2474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594365507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:09 Heat of formation + Delta-G solvation = -48.887567 kcal Electronic energy + Delta-G solvation = -22483.633809 eV Core-core repulsion = 19372.417160 eV Total energy + Delta-G solvation = -3111.216650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.40496 -38.52639 -35.52957 -34.16563 -33.83850 -31.97183 -28.67841 -28.27174 -27.72018 -26.98577 -26.33471 -23.80756 -21.66755 -21.16943 -19.89825 -19.06125 -18.38483 -16.88441 -16.43053 -16.04368 -15.65818 -15.26298 -14.48671 -14.37296 -14.17167 -14.09899 -13.89700 -13.21376 -13.04649 -12.89594 -12.54450 -12.26372 -12.10921 -12.08200 -11.76887 -11.73367 -11.52830 -11.38852 -11.30262 -10.81006 -10.73432 -10.72150 -10.57506 -10.51520 -10.49313 -10.38870 -9.63621 -9.57779 -9.21274 -8.96089 -8.40343 -8.29824 -5.95415 -3.96526 2.94063 3.01340 3.35298 3.42430 3.48539 3.93768 4.15407 4.42632 4.51427 4.63297 4.70886 4.79485 4.92963 5.08649 5.12782 5.25106 5.27157 5.35176 5.36798 5.40673 5.42722 5.46351 5.51298 5.59657 5.68005 5.69020 5.75187 5.77114 5.77728 5.83958 5.88781 5.96065 6.11842 6.15945 6.21861 6.27698 6.60133 6.76906 6.98056 7.19544 7.69472 7.75187 7.86995 8.05744 8.49606 8.51116 9.10813 9.67317 11.16185 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030177 B = 0.003304 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.650770 B = 8473.064360 C = 9147.387762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.141 4.141 4 C 0.113 3.887 5 N -0.608 5.608 6 C 0.527 3.473 7 O -0.533 6.533 8 C -0.133 4.133 9 C -0.095 4.095 10 C 0.020 3.980 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.117 3.883 20 H 0.049 0.951 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.114 4.114 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 15.792 19.043 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.009 4.009 5 N -0.342 5.342 6 C 0.318 3.682 7 O -0.408 6.408 8 C -0.173 4.173 9 C -0.133 4.133 10 C -0.017 4.017 11 C -0.554 4.554 12 H 0.075 0.925 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.011 3.989 20 H 0.067 0.933 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.133 4.133 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.089 15.414 19.081 25.828 hybrid contribution 0.523 -0.702 -0.555 1.037 sum -7.566 14.712 18.525 24.837 Atomic orbital electron populations 1.21754 0.93122 1.02271 1.02132 1.21349 0.95898 0.95142 0.94383 1.21922 1.01264 0.94496 1.02149 1.23008 0.86651 0.94911 0.96300 1.47595 1.30999 1.41395 1.14252 1.21012 0.81732 0.76882 0.88558 1.90676 1.27621 1.53157 1.69387 1.21816 1.02504 1.01816 0.91160 1.21453 0.96968 0.95671 0.99189 1.19133 0.96763 0.96304 0.89464 1.21317 1.12871 1.21820 0.99434 0.92530 1.25024 0.95618 0.96973 0.96952 1.69975 1.30957 1.43575 1.09273 0.86539 0.81195 0.81546 0.78777 1.19678 1.21047 1.21054 1.20574 0.96192 0.97334 0.84768 0.93296 1.21283 0.99647 1.00894 0.92377 1.22844 0.97276 0.98530 0.97087 1.22162 0.98011 0.98814 0.96097 1.23112 0.96886 0.99268 0.94047 0.89053 0.92107 0.92213 0.92212 0.92032 0.92120 0.91901 0.90728 0.90483 0.89564 0.89564 0.92742 0.92727 0.96626 0.96623 0.93154 0.91182 0.91079 0.91392 0.91512 0.91447 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.66 37.16 0.32 -0.57 16 2 C -0.07 -0.54 0.93 -152.91 -0.14 -0.68 16 3 C -0.14 -1.00 7.38 37.16 0.27 -0.73 16 4 C 0.11 1.17 5.91 -0.78 0.00 1.16 16 5 N -0.61 -8.39 3.22 -164.79 -0.53 -8.92 16 6 C 0.53 9.30 7.87 -10.98 -0.09 9.22 16 7 O -0.53 -11.30 15.80 5.56 0.09 -11.21 16 8 C -0.13 -2.36 5.01 -27.88 -0.14 -2.50 16 9 C -0.09 -2.13 4.44 -26.73 -0.12 -2.25 16 10 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 11 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 12 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 15 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.12 1.41 2.84 -70.07 -0.20 1.21 16 20 H 0.05 0.58 5.37 -51.93 -0.28 0.30 16 21 C -0.10 -1.23 6.02 -27.13 -0.16 -1.39 16 22 C -0.12 -0.99 6.93 -23.57 -0.16 -1.16 16 23 C -0.11 -0.84 5.96 -25.19 -0.15 -0.99 16 24 C -0.11 -1.03 2.90 -88.53 -0.26 -1.29 16 25 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 6.22 -51.93 -0.32 0.18 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 6.95 -51.93 -0.36 0.02 16 32 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 33 H 0.08 0.76 7.83 -51.93 -0.41 0.35 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.52 6.19 -51.93 -0.32 0.19 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -33.24 354.16 -9.16 -42.40 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -8.40 Total: -4.67 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.38 Total: -13.56 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.21 Total: -35.58 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.24 -9.16 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.486 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds