Wall clock time and date at job start Fri Apr 10 2020 17:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.93581 * 2 1 4 4 C 1.56168 * 111.20133 * 236.12974 * 2 1 3 5 5 N 1.49324 * 106.50841 * 218.46636 * 4 2 1 6 6 C 1.34777 * 127.11311 * 172.63918 * 5 4 2 7 7 O 1.21279 * 120.00162 * 179.68410 * 6 5 4 8 8 C 1.50706 * 120.00146 * 359.68129 * 6 5 4 9 9 C 1.52999 * 109.46953 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46623 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47494 * 119.99680 * 15 13 11 18 18 H 1.48505 * 109.47047 * 239.99860 * 15 13 11 19 19 C 1.41778 * 105.77142 * 352.37124 * 5 4 2 20 20 H 1.08993 * 105.77136 * 286.91960 * 19 5 4 21 21 C 1.49047 * 131.49145 * 158.15823 * 19 5 4 22 22 C 1.55885 * 104.20697 * 203.01594 * 21 19 5 23 23 C 1.56025 * 105.89122 * 5.17517 * 22 21 19 24 24 C 1.52804 * 111.06949 * 124.04139 * 2 1 3 25 25 H 1.09000 * 112.93342 * 40.40655 * 24 2 1 26 26 H 1.09003 * 109.46958 * 295.95546 * 1 2 3 27 27 H 1.08992 * 109.47716 * 55.95643 * 1 2 3 28 28 H 1.09002 * 109.47339 * 175.96340 * 1 2 3 29 29 H 1.09000 * 109.46981 * 184.04228 * 3 2 1 30 30 H 1.09000 * 109.47216 * 304.04317 * 3 2 1 31 31 H 1.08994 * 109.46964 * 64.04518 * 3 2 1 32 32 H 1.08996 * 110.17615 * 99.14700 * 4 2 1 33 33 H 1.08996 * 109.95249 * 337.66367 * 4 2 1 34 34 H 1.09000 * 109.46974 * 60.00144 * 8 6 5 35 35 H 1.09001 * 109.46547 * 300.00234 * 8 6 5 36 36 H 1.09000 * 109.47486 * 60.00062 * 9 8 6 37 37 H 1.09001 * 109.47362 * 299.99339 * 9 8 6 38 38 H 1.08993 * 109.46955 * 300.00075 * 10 9 8 39 39 H 1.09000 * 109.47050 * 59.99904 * 10 9 8 40 40 H 0.96992 * 120.00032 * 180.02562 * 14 13 11 41 41 H 1.09007 * 110.48690 * 321.69756 * 21 19 5 42 42 H 1.09002 * 110.48678 * 84.20359 * 21 19 5 43 43 H 1.09008 * 110.16365 * 124.28181 * 22 21 19 44 44 H 1.09000 * 110.16571 * 246.07022 * 22 21 19 45 45 H 1.09005 * 110.81012 * 143.70284 * 23 22 21 46 46 H 1.08999 * 110.81194 * 267.01982 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0767 1.4290 0.0000 4 6 2.0947 -0.8114 -1.2089 5 7 3.2933 -1.5454 -0.7044 6 6 4.0147 -2.4743 -1.3626 7 8 4.9745 -2.9878 -0.8279 8 6 3.6286 -2.8750 -2.7632 9 6 4.6025 -3.9376 -3.2764 10 6 4.2101 -4.3449 -4.6981 11 6 5.1697 -5.3910 -5.2038 12 1 5.9787 -5.7311 -4.5743 13 6 5.0155 -5.9133 -6.4704 14 7 4.0305 -5.4988 -7.2372 15 14 6.2044 -7.2106 -7.0971 16 1 7.2154 -7.5030 -6.0493 17 1 5.4564 -8.4512 -7.4238 18 1 6.8871 -6.7085 -8.3166 19 6 3.5192 -1.0585 0.6078 20 1 3.9210 -0.0527 0.4855 21 6 4.2479 -1.6466 1.7674 22 6 3.6306 -0.9336 3.0086 23 6 2.4644 -0.0541 2.4600 24 6 2.0793 -0.7982 1.1815 25 1 1.5187 -1.7131 1.3734 26 1 -0.3633 0.4498 0.9240 27 1 -0.3634 0.5752 -0.8514 28 1 -0.3634 -1.0251 -0.0723 29 1 3.1639 1.4021 -0.0724 30 1 1.6692 1.9740 -0.8515 31 1 1.7864 1.9291 0.9240 32 1 2.3823 -0.1353 -2.0140 33 1 1.3457 -1.5190 -1.5644 34 1 3.6668 -2.0018 -3.4145 35 1 2.6172 -3.2813 -2.7591 36 1 4.5639 -4.8108 -2.6250 37 1 5.6141 -3.5317 -3.2805 38 1 3.1986 -4.7508 -4.6936 39 1 4.2483 -3.4719 -5.3497 40 1 3.9218 -5.8665 -8.1281 41 1 4.0760 -2.7218 1.8205 42 1 5.3147 -1.4350 1.6948 43 1 3.2458 -1.6712 3.7130 44 1 4.3791 -0.3060 3.4923 45 1 1.6293 -0.0376 3.1603 46 1 2.8094 0.9577 2.2474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594365507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:08 Heat of formation + Delta-G solvation = -67.585684 kcal Electronic energy + Delta-G solvation = -22484.444621 eV Core-core repulsion = 19372.417160 eV Total energy + Delta-G solvation = -3112.027461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31572 -39.84703 -36.34391 -36.13743 -34.83250 -34.01647 -30.23399 -29.02071 -28.43583 -28.09940 -27.26518 -25.65759 -22.96263 -22.02695 -21.51765 -20.00423 -19.38563 -18.48545 -17.74166 -17.54330 -16.90230 -16.50185 -16.10163 -15.69189 -15.31705 -14.80272 -14.65969 -14.52717 -14.37614 -13.95993 -13.82893 -13.56656 -13.35195 -13.13179 -12.86880 -12.68380 -12.66596 -12.53714 -12.40791 -12.39256 -12.25117 -12.10901 -11.61040 -11.51319 -11.49466 -11.35637 -11.31561 -11.22712 -11.19697 -10.65366 -10.56392 -9.50228 -8.21906 -6.32064 1.38360 1.38388 1.52605 1.57117 1.92568 2.40451 3.07268 3.10812 3.41089 3.68766 3.74937 3.92756 4.05737 4.06140 4.14425 4.19240 4.35525 4.40303 4.46526 4.49531 4.58180 4.67759 4.71425 4.74146 4.82724 4.89961 4.92186 5.00907 5.03520 5.04679 5.09320 5.14228 5.15003 5.18761 5.20621 5.29366 5.41024 5.43020 5.50799 5.55611 5.60494 5.71562 5.83631 6.25236 6.51368 6.82772 7.17754 7.36590 8.89943 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030177 B = 0.003304 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.650770 B = 8473.064360 C = 9147.387762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.140 4.140 4 C 0.101 3.899 5 N -0.603 5.603 6 C 0.523 3.477 7 O -0.581 6.581 8 C -0.123 4.123 9 C -0.081 4.081 10 C 0.028 3.972 11 C -0.548 4.548 12 H 0.050 0.950 13 C 0.003 3.997 14 N -0.928 5.928 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.093 3.907 20 H 0.056 0.944 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.105 4.105 24 C -0.100 4.100 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 17.215 19.904 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.019 4.019 5 N -0.335 5.335 6 C 0.314 3.686 7 O -0.461 6.461 8 C -0.162 4.162 9 C -0.119 4.119 10 C -0.009 4.009 11 C -0.586 4.586 12 H 0.068 0.932 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.012 4.012 20 H 0.074 0.926 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.120 4.120 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.430 16.880 19.956 27.787 hybrid contribution 0.904 -1.113 -0.827 1.656 sum -8.526 15.767 19.129 26.215 Atomic orbital electron populations 1.21742 0.91514 1.02364 1.03326 1.21358 0.96972 0.95175 0.92342 1.21921 1.00334 0.93831 1.03555 1.23382 0.85437 0.95267 0.97860 1.47594 1.31060 1.39861 1.14984 1.20840 0.81669 0.77593 0.88478 1.90652 1.29828 1.55344 1.70301 1.21622 1.01780 1.00993 0.91840 1.21160 0.97456 0.96564 0.96706 1.19005 0.95490 0.95063 0.91382 1.21696 1.13558 1.23131 1.00191 0.93179 1.25914 0.97424 0.99133 0.96995 1.70073 1.32348 1.44674 1.09771 0.85429 0.78842 0.78710 0.78255 1.19330 1.19927 1.19939 1.20904 0.98921 0.97247 0.84166 0.92583 1.21326 0.99059 0.99736 0.94530 1.22820 0.97928 0.98785 0.95435 1.22180 0.98076 0.98717 0.95284 1.23103 0.94298 0.99499 0.95058 0.89824 0.90690 0.91301 0.92685 0.93384 0.91174 0.90164 0.89814 0.89872 0.87860 0.87886 0.94234 0.94205 0.98036 0.98032 0.92599 0.93818 0.92926 0.90660 0.90232 0.89305 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.66 71.98 0.62 -0.69 16 2 C -0.06 -0.78 0.93 -51.15 -0.05 -0.83 16 3 C -0.14 -1.54 7.38 71.98 0.53 -1.01 16 4 C 0.10 1.93 5.91 86.93 0.51 2.44 16 5 N -0.60 -16.57 3.22 -793.67 -2.55 -19.12 16 6 C 0.52 18.97 7.87 87.66 0.69 19.66 16 7 O -0.58 -25.93 15.80 -3.03 -0.05 -25.97 16 8 C -0.12 -4.41 5.01 29.85 0.15 -4.26 16 9 C -0.08 -3.77 4.44 30.60 0.14 -3.63 16 10 C 0.03 1.52 4.97 29.85 0.15 1.66 16 11 C -0.55 -33.04 9.11 25.60 0.23 -32.81 16 12 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 15 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 C 0.09 2.20 2.84 46.06 0.13 2.33 16 20 H 0.06 1.28 5.37 -2.39 -0.01 1.26 16 21 C -0.11 -2.62 6.02 30.33 0.18 -2.44 16 22 C -0.11 -1.68 6.93 32.64 0.23 -1.45 16 23 C -0.11 -1.23 5.96 31.59 0.19 -1.04 16 24 C -0.10 -1.61 2.90 -9.44 -0.03 -1.64 16 25 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.62 8.07 -2.39 -0.02 0.60 16 29 H 0.05 0.68 6.22 -2.39 -0.01 0.66 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.64 6.95 -2.39 -0.02 0.62 16 32 H 0.08 1.46 7.91 -2.39 -0.02 1.44 16 33 H 0.08 1.49 7.83 -2.39 -0.02 1.48 16 34 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 37 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.09 0.86 6.19 -2.39 -0.01 0.85 16 Total: -1.00 -73.78 354.16 4.77 -69.01 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.92 Total: 7.91 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.14 Total: -23.06 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.27 Total: -75.86 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.78 4.77 -69.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.426 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds