Wall clock time and date at job start Fri Apr 10 2020 17:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99509 * 2 1 4 4 H 1.48501 * 109.46833 * 239.99470 * 3 2 1 5 5 H 1.48499 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47148 * 119.99746 * 3 2 1 7 7 C 1.37873 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47404 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47249 * 180.02562 * 11 10 9 13 13 C 1.47014 * 111.00236 * 66.36284 * 12 11 10 14 14 C 1.53102 * 109.25698 * 182.39478 * 13 12 11 15 15 O 1.43010 * 109.25737 * 303.14966 * 14 13 12 16 16 C 1.43020 * 113.74005 * 58.67257 * 15 14 13 17 17 C 1.53002 * 109.50912 * 181.39447 * 16 15 14 18 18 C 1.52993 * 117.49739 * 133.52951 * 17 16 15 19 19 C 1.53002 * 117.49770 * 64.86872 * 17 16 15 20 20 C 1.52998 * 109.50454 * 61.26538 * 16 15 14 21 21 C 1.53001 * 117.50202 * 134.43865 * 20 16 15 22 22 C 1.53000 * 117.50282 * 65.77419 * 20 16 15 23 23 C 1.47011 * 111.00132 * 189.99909 * 12 11 10 24 24 H 0.97000 * 120.00762 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47079 * 60.00199 * 9 7 2 26 26 H 1.09001 * 109.47577 * 299.99463 * 9 7 2 27 27 H 1.08999 * 109.46913 * 60.00185 * 10 9 7 28 28 H 1.09005 * 109.46972 * 300.00330 * 10 9 7 29 29 H 1.09003 * 109.47004 * 59.99604 * 11 10 9 30 30 H 1.09004 * 109.46644 * 299.99937 * 11 10 9 31 31 H 1.09000 * 109.50716 * 302.32675 * 13 12 11 32 32 H 1.09000 * 109.50556 * 62.45906 * 13 12 11 33 33 H 1.09004 * 109.50775 * 63.08811 * 14 13 12 34 34 H 1.09000 * 109.50060 * 183.17263 * 14 13 12 35 35 H 1.09001 * 115.54483 * 279.20322 * 17 16 15 36 36 H 1.09004 * 117.50192 * 359.97438 * 18 17 16 37 37 H 1.09006 * 117.49554 * 145.02536 * 18 17 16 38 38 H 1.08996 * 117.49595 * 214.97813 * 19 17 16 39 39 H 1.08998 * 117.50039 * 359.97438 * 19 17 16 40 40 H 1.09008 * 115.54710 * 280.10800 * 20 16 15 41 41 H 1.08998 * 117.49203 * 359.97438 * 21 20 16 42 42 H 1.08997 * 117.50105 * 145.01426 * 21 20 16 43 43 H 1.08997 * 117.49983 * 214.98047 * 22 20 16 44 44 H 1.09004 * 117.49384 * 359.97438 * 22 20 16 45 45 H 1.08999 * 109.50552 * 297.54472 * 23 12 11 46 46 H 1.09005 * 109.50689 * 57.67327 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 7 2.4351 -6.1036 0.0005 13 6 3.1949 -6.1465 1.2584 14 6 4.2166 -7.2848 1.1925 15 8 3.5362 -8.5147 0.9287 16 6 2.7866 -8.5082 -0.2892 17 6 2.0736 -9.8515 -0.4575 18 6 0.5981 -9.8224 -0.8607 19 6 0.9946 -10.2116 0.5656 20 6 3.7323 -8.2794 -1.4699 21 6 3.5600 -9.1764 -2.6974 22 6 4.7633 -9.3690 -1.7709 23 6 1.7504 -7.3824 -0.2384 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8895 29 1 0.8541 -5.0446 -0.8903 30 1 0.8536 -5.0451 0.8897 31 1 3.7143 -5.1991 1.4024 32 1 2.5119 -6.3181 2.0904 33 1 4.9320 -7.0861 0.3944 34 1 4.7435 -7.3563 2.1441 35 1 2.6867 -10.6632 -0.8494 36 1 0.1350 -8.8463 -1.0057 37 1 0.2401 -10.6153 -1.5175 38 1 0.8974 -11.2603 0.8465 39 1 0.7929 -9.4918 1.3589 40 1 4.0294 -7.2445 -1.6405 41 1 2.7732 -9.9299 -2.6634 42 1 3.7440 -8.7319 -3.6754 43 1 5.7384 -9.0511 -2.1399 44 1 4.7681 -10.2488 -1.1274 45 1 1.0443 -7.5736 0.5697 46 1 1.2154 -7.3371 -1.1870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595821776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:27 Heat of formation + Delta-G solvation = 6.325590 kcal Electronic energy + Delta-G solvation = -22767.999641 eV Core-core repulsion = 19659.177213 eV Total energy + Delta-G solvation = -3108.822427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.68968 -37.48543 -36.25279 -35.76647 -33.52673 -31.37460 -30.56416 -27.90816 -25.75664 -24.60148 -22.94468 -22.72320 -22.25116 -22.07586 -21.26656 -19.83985 -18.31382 -16.75132 -16.49373 -16.24414 -15.97548 -15.15313 -15.04674 -14.46854 -14.37828 -14.09956 -13.90531 -13.70274 -13.19973 -13.08904 -12.30802 -11.99978 -11.82849 -11.68233 -11.62900 -11.36904 -11.33869 -11.18431 -10.82691 -10.71134 -10.56002 -10.54506 -10.46552 -10.34210 -10.21434 -9.98961 -9.60998 -9.55119 -9.28233 -9.02851 -8.33440 -8.10879 -5.98822 -4.01072 3.27705 3.34065 3.38250 3.40883 3.77621 3.98690 4.07730 4.47079 4.48146 4.53782 4.70676 4.85609 4.90281 4.98266 5.08675 5.09353 5.20976 5.36800 5.37904 5.41304 5.47202 5.50575 5.58574 5.63094 5.65817 5.74851 5.81434 5.87432 5.91571 5.96368 5.96919 6.06152 6.07414 6.08141 6.29300 6.31336 6.67926 6.74175 7.09227 7.20761 7.30853 7.32518 7.68594 7.83623 8.01285 8.44508 9.05842 9.62878 11.12604 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.003477 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.063678 B = 8052.028974 C = 8286.936473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.056 3.944 12 N -0.533 5.533 13 C 0.015 3.985 14 C 0.064 3.936 15 O -0.371 6.371 16 C 0.185 3.815 17 C -0.142 4.142 18 C -0.176 4.176 19 C -0.169 4.169 20 C -0.163 4.163 21 C -0.175 4.175 22 C -0.174 4.174 23 C 0.032 3.968 24 H 0.261 0.739 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.039 0.961 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 -21.848 -1.273 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.071 4.071 12 N -0.257 5.257 13 C -0.114 4.114 14 C -0.012 4.012 15 O -0.290 6.290 16 C 0.145 3.855 17 C -0.161 4.161 18 C -0.213 4.213 19 C -0.206 4.206 20 C -0.182 4.182 21 C -0.212 4.212 22 C -0.211 4.211 23 C -0.096 4.096 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.058 0.942 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.517 -21.804 -1.530 22.543 hybrid contribution -0.168 1.165 0.527 1.290 sum 5.349 -20.639 -1.003 21.344 Atomic orbital electron populations 1.69954 1.06063 1.26675 1.50924 1.25022 0.94837 0.99230 0.95360 0.86662 0.79584 0.83154 0.78625 1.20221 1.21305 1.20264 1.21206 0.92991 0.91047 1.50500 0.92750 1.19066 0.94022 0.91385 0.97067 1.21644 0.99153 0.92629 1.00717 1.22318 0.93631 0.90842 1.00270 1.62270 1.27196 1.02728 1.33553 1.22836 0.97164 1.00359 0.91001 1.22638 0.93962 0.83337 1.01301 1.87989 1.65906 1.35215 1.39936 1.20292 0.89407 0.92117 0.83662 1.22118 0.91076 0.97656 1.05215 1.23148 0.96075 1.03623 0.98453 1.22908 1.02753 1.02113 0.92816 1.22746 1.01239 0.97599 0.96579 1.23017 1.00639 1.03000 0.94569 1.22856 0.94089 1.00932 1.03240 1.22796 0.95525 0.89768 1.01522 0.92979 0.96628 0.96862 0.93496 0.92603 0.91151 0.95293 0.88923 0.94407 0.92117 0.88864 0.87152 0.88027 0.88497 0.88834 0.88611 0.86226 0.88400 0.88980 0.89095 0.88911 0.94248 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.15 5.09 -26.73 -0.14 -2.29 16 11 C 0.06 0.99 4.96 -3.83 -0.02 0.97 16 12 N -0.53 -8.05 4.08 -234.31 -0.96 -9.01 16 13 C 0.01 0.21 5.44 -3.71 -0.02 0.19 16 14 C 0.06 0.80 6.71 37.21 0.25 1.05 16 15 O -0.37 -4.92 10.24 -35.23 -0.36 -5.28 16 16 C 0.18 2.21 0.76 -90.57 -0.07 2.14 16 17 C -0.14 -1.45 3.71 -90.62 -0.34 -1.78 16 18 C -0.18 -1.59 9.63 -26.70 -0.26 -1.85 16 19 C -0.17 -1.64 9.83 -26.69 -0.26 -1.90 16 20 C -0.16 -1.89 3.95 -90.62 -0.36 -2.24 16 21 C -0.18 -1.70 9.64 -26.69 -0.26 -1.96 16 22 C -0.17 -1.73 9.80 -26.69 -0.26 -1.99 16 23 C 0.03 0.43 2.97 -3.71 -0.01 0.42 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.09 1.35 6.38 -51.93 -0.33 1.02 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.75 7.05 -51.93 -0.37 0.38 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.11 1.06 6.19 -51.93 -0.32 0.73 16 36 H 0.10 0.98 5.94 -51.93 -0.31 0.67 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.04 7.27 -51.93 -0.38 0.66 16 40 H 0.12 1.60 7.42 -51.92 -0.39 1.22 16 41 H 0.10 0.87 6.22 -51.93 -0.32 0.55 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.91 7.47 -51.93 -0.39 0.52 16 45 H 0.04 0.54 6.76 -51.93 -0.35 0.19 16 46 H 0.09 1.11 6.92 -51.93 -0.36 0.75 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -30.14 350.10 -10.65 -40.78 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.04 Total: 0.31 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.29 Total: -22.44 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.22 Total: -35.44 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.36 Total: -5.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.14 -10.65 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595821776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.110 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds